Wall clock time and date at job start Sun Mar 29 2020 21:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.78257 * 2 1 4 4 C 1.53227 * 109.62831 * 239.51781 * 2 1 3 5 5 C 1.52957 * 109.40562 * 185.66024 * 4 2 1 6 6 H 1.09001 * 109.35837 * 303.52448 * 5 4 2 7 7 C 1.50706 * 109.41165 * 183.70732 * 5 4 2 8 8 O 1.21284 * 120.00101 * 359.64629 * 7 5 4 9 9 N 1.34774 * 119.99833 * 179.64696 * 7 5 4 10 10 C 1.46506 * 119.99731 * 179.97438 * 9 7 5 11 11 C 1.50698 * 109.47006 * 179.97438 * 10 9 7 12 12 H 1.08005 * 119.99819 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00046 * 179.97438 * 11 10 9 14 14 N 1.31511 * 120.00192 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 119.99979 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47297 * 180.02562 * 15 13 11 17 17 H 1.48503 * 109.47261 * 60.00310 * 15 13 11 18 18 H 1.48500 * 109.47454 * 300.00304 * 15 13 11 19 19 C 1.52953 * 109.82036 * 63.60221 * 5 4 2 20 20 C 1.53230 * 109.40056 * 296.40273 * 19 5 4 21 21 C 1.51266 * 108.54048 * 54.62354 * 20 19 5 22 22 O 1.20766 * 120.84798 * 128.67509 * 21 20 19 23 23 H 1.09006 * 109.46991 * 299.52679 * 1 2 3 24 24 H 1.09000 * 109.46943 * 59.52343 * 1 2 3 25 25 H 1.08990 * 109.47405 * 179.52642 * 1 2 3 26 26 H 1.09001 * 109.48041 * 65.67979 * 4 2 1 27 27 H 1.09000 * 109.48014 * 305.64636 * 4 2 1 28 28 H 0.96989 * 120.00264 * 359.97438 * 9 7 5 29 29 H 1.09001 * 109.47068 * 60.00448 * 10 9 7 30 30 H 1.08993 * 109.47068 * 299.99902 * 10 9 7 31 31 H 0.97001 * 119.99934 * 359.97438 * 14 13 11 32 32 H 1.09000 * 109.48587 * 56.37401 * 19 5 4 33 33 H 1.08996 * 109.48517 * 176.41909 * 19 5 4 34 34 H 1.09001 * 109.62935 * 174.34111 * 20 19 5 35 35 H 1.09007 * 109.62567 * 294.90860 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8989 1.0257 0.0000 4 6 2.0447 -0.7321 -1.2438 5 6 3.5676 -0.8529 -1.1685 6 1 4.0039 0.1401 -1.0604 7 6 4.0825 -1.4912 -2.4329 8 8 3.3068 -1.8227 -3.3043 9 7 5.4051 -1.6936 -2.5953 10 6 5.9056 -2.3146 -3.8242 11 6 7.4069 -2.4257 -3.7555 12 1 7.9353 -2.0697 -2.8834 13 6 8.1057 -2.9827 -4.8054 14 7 7.4622 -3.4166 -5.8671 15 14 9.9666 -3.1210 -4.7198 16 1 10.4740 -3.7504 -5.9656 17 1 10.3478 -3.9557 -3.5523 18 1 10.5576 -1.7665 -4.5739 19 6 3.9608 -1.7146 0.0325 20 6 3.5182 -1.0195 1.3243 21 6 2.0381 -0.7226 1.2280 22 8 1.2814 -1.0537 2.1091 23 1 -0.3633 0.5065 0.8943 24 1 -0.3633 0.5212 -0.8857 25 1 -0.3633 -1.0275 -0.0085 26 1 1.7682 -0.1709 -2.1363 27 1 1.6027 -1.7275 -1.2886 28 1 6.0255 -1.4282 -1.8986 29 1 5.6259 -1.7016 -4.6810 30 1 5.4719 -3.3087 -3.9316 31 1 6.4959 -3.3451 -5.9113 32 1 3.4736 -2.6867 -0.0424 33 1 5.0423 -1.8497 0.0445 34 1 3.7056 -1.6744 2.1753 35 1 4.0712 -0.0881 1.4469 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116847702.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:18 Heat of formation + Delta-G solvation = -110.519620 kcal Electronic energy + Delta-G solvation = -17020.254368 eV Core-core repulsion = 14209.833436 eV Total energy + Delta-G solvation = -2810.420932 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.48205 -38.98061 -36.16336 -34.51046 -33.22008 -32.33126 -29.83945 -27.07705 -25.97728 -23.30201 -22.49531 -21.95454 -19.58693 -19.23686 -17.53077 -16.30342 -16.08402 -15.80881 -15.08712 -15.07255 -14.36586 -14.12570 -13.82289 -13.45305 -13.01442 -12.92260 -12.48615 -12.36523 -12.33061 -11.95654 -11.80429 -11.56114 -11.13856 -11.09631 -11.03308 -10.82729 -10.78582 -10.19128 -9.47712 -9.21551 -8.82096 -8.73164 -8.06718 -6.55495 -4.29625 1.79256 3.16826 3.34969 3.36574 3.55701 3.79667 3.93821 4.41713 4.44074 4.58481 4.73991 4.81541 4.97535 5.08047 5.21588 5.23696 5.25211 5.35166 5.55002 5.62215 5.66546 5.76581 5.83093 5.87584 6.01033 6.12337 6.20218 6.94295 7.16769 7.23972 7.33125 7.60309 8.21503 8.39791 8.66614 8.89747 9.44327 10.84601 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.048489 B = 0.004714 C = 0.004396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.307387 B = 5938.160642 C = 6368.023850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.142 4.142 3 H 0.105 0.895 4 C -0.088 4.088 5 C -0.114 4.114 6 H 0.099 0.901 7 C 0.503 3.497 8 O -0.555 6.555 9 N -0.706 5.706 10 C 0.239 3.761 11 C -0.624 4.624 12 H 0.057 0.943 13 C 0.023 3.977 14 N -0.901 5.901 15 Si 1.075 2.925 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.286 1.286 19 C -0.106 4.106 20 C -0.167 4.167 21 C 0.364 3.636 22 O -0.458 6.458 23 H 0.060 0.940 24 H 0.063 0.937 25 H 0.059 0.941 26 H 0.084 0.916 27 H 0.074 0.926 28 H 0.393 0.607 29 H 0.017 0.983 30 H 0.017 0.983 31 H 0.272 0.728 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.229 7.675 13.285 16.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.161 4.161 3 H 0.123 0.877 4 C -0.126 4.126 5 C -0.135 4.135 6 H 0.117 0.883 7 C 0.287 3.713 8 O -0.435 6.435 9 N -0.354 5.354 10 C 0.117 3.883 11 C -0.662 4.662 12 H 0.075 0.925 13 C -0.183 4.183 14 N -0.536 5.536 15 Si 0.902 3.098 16 H -0.205 1.205 17 H -0.213 1.213 18 H -0.213 1.213 19 C -0.144 4.144 20 C -0.205 4.205 21 C 0.240 3.760 22 O -0.331 6.331 23 H 0.079 0.921 24 H 0.082 0.918 25 H 0.078 0.922 26 H 0.103 0.897 27 H 0.093 0.907 28 H 0.226 0.774 29 H 0.035 0.965 30 H 0.035 0.965 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.102 0.898 34 H 0.110 0.890 35 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -6.836 6.713 12.250 15.552 hybrid contribution -0.893 0.722 1.113 1.599 sum -7.729 7.435 13.363 17.134 Atomic orbital electron populations 1.21640 0.93079 1.02783 1.02101 1.21929 0.97952 1.01168 0.95005 0.87736 1.21382 0.93041 1.01810 0.96328 1.21410 0.97418 1.00791 0.93904 0.88322 1.20382 0.83193 0.79671 0.88041 1.90661 1.56267 1.52345 1.44191 1.46297 1.06087 1.60828 1.22152 1.19177 0.94717 0.92591 0.81775 1.22053 0.90880 1.46553 1.06755 0.92483 1.25877 1.07356 0.92990 0.92071 1.70764 1.11113 1.42719 1.28958 0.83452 0.73519 0.76551 0.76230 1.20544 1.21269 1.21276 1.21515 1.02627 0.98934 0.91312 1.22322 0.94920 1.03270 0.99994 1.24966 0.90886 0.74477 0.85701 1.90380 1.60183 1.42739 1.39760 0.92114 0.91781 0.92194 0.89740 0.90718 0.77419 0.96544 0.96540 0.91705 0.90775 0.89785 0.89023 0.88096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 8.60 37.16 0.32 -1.04 16 2 C -0.14 -1.40 3.01 -91.38 -0.27 -1.67 16 3 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 4 C -0.09 -1.05 3.83 -26.64 -0.10 -1.16 16 5 C -0.11 -1.42 2.42 -91.82 -0.22 -1.64 16 6 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 7 C 0.50 9.32 7.15 -10.98 -0.08 9.24 16 8 O -0.56 -12.65 15.94 5.55 0.09 -12.57 16 9 N -0.71 -14.12 5.42 -61.47 -0.33 -14.45 16 10 C 0.24 6.14 4.74 -5.19 -0.02 6.11 16 11 C -0.62 -16.75 9.28 -34.44 -0.32 -17.07 16 12 H 0.06 1.44 7.60 -52.48 -0.40 1.04 16 13 C 0.02 0.64 5.46 -17.82 -0.10 0.54 16 14 N -0.90 -26.95 13.65 55.43 0.76 -26.19 16 15 Si 1.08 23.93 29.90 -169.99 -5.08 18.85 16 16 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 17 H -0.29 -6.04 7.11 56.52 0.40 -5.64 16 18 H -0.29 -6.04 7.11 56.52 0.40 -5.64 16 19 C -0.11 -1.15 5.15 -26.64 -0.14 -1.28 16 20 C -0.17 -1.51 6.17 -27.49 -0.17 -1.68 16 21 C 0.36 4.03 6.58 -28.48 -0.19 3.85 16 22 O -0.46 -6.46 16.86 5.99 0.10 -6.36 16 23 H 0.06 0.58 8.04 -51.93 -0.42 0.17 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.08 1.07 8.00 -51.93 -0.42 0.65 16 27 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 28 H 0.39 6.70 7.69 -40.82 -0.31 6.38 16 29 H 0.02 0.47 8.01 -51.93 -0.42 0.05 16 30 H 0.02 0.47 8.01 -51.93 -0.42 0.05 16 31 H 0.27 8.25 7.22 -40.82 -0.29 7.96 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.08 0.86 7.46 -51.93 -0.39 0.47 16 34 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.10 0.69 8.14 -51.92 -0.42 0.27 16 LS Contribution 292.62 15.07 4.41 4.41 Total: -1.00 -32.92 292.62 -6.59 -39.51 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -5.24 Total: 2.62 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: -1.29 Total: -5.82 kcal Atomic # 7 Polarization: -41.07 SS G_CDS: 0.42 Total: -40.64 kcal Atomic # 8 Polarization: -19.12 SS G_CDS: 0.19 Total: -18.93 kcal Atomic # 14 Polarization: 23.93 SS G_CDS: -5.08 Total: 18.85 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -32.92 -6.59 -39.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116847702.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.013 kcal (2) G-P(sol) polarization free energy of solvation -32.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds