Wall clock time and date at job start Sun Mar 29 2020 21:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.78257 * 2 1 4 4 C 1.53227 * 109.62831 * 239.51781 * 2 1 3 5 5 C 1.52957 * 109.40562 * 185.66024 * 4 2 1 6 6 H 1.09001 * 109.35837 * 303.52448 * 5 4 2 7 7 C 1.50706 * 109.41165 * 183.70732 * 5 4 2 8 8 O 1.21284 * 120.00101 * 359.64629 * 7 5 4 9 9 N 1.34774 * 119.99833 * 179.64696 * 7 5 4 10 10 C 1.46506 * 119.99731 * 179.97438 * 9 7 5 11 11 C 1.50698 * 109.47006 * 179.97438 * 10 9 7 12 12 H 1.08005 * 119.99819 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00046 * 179.97438 * 11 10 9 14 14 N 1.31511 * 120.00192 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 119.99979 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47297 * 180.02562 * 15 13 11 17 17 H 1.48503 * 109.47261 * 60.00310 * 15 13 11 18 18 H 1.48500 * 109.47454 * 300.00304 * 15 13 11 19 19 C 1.52953 * 109.82036 * 63.60221 * 5 4 2 20 20 C 1.53230 * 109.40056 * 296.40273 * 19 5 4 21 21 C 1.51266 * 108.54048 * 54.62354 * 20 19 5 22 22 O 1.20766 * 120.84798 * 128.67509 * 21 20 19 23 23 H 1.09006 * 109.46991 * 299.52679 * 1 2 3 24 24 H 1.09000 * 109.46943 * 59.52343 * 1 2 3 25 25 H 1.08990 * 109.47405 * 179.52642 * 1 2 3 26 26 H 1.09001 * 109.48041 * 65.67979 * 4 2 1 27 27 H 1.09000 * 109.48014 * 305.64636 * 4 2 1 28 28 H 0.96989 * 120.00264 * 359.97438 * 9 7 5 29 29 H 1.09001 * 109.47068 * 60.00448 * 10 9 7 30 30 H 1.08993 * 109.47068 * 299.99902 * 10 9 7 31 31 H 0.97001 * 119.99934 * 359.97438 * 14 13 11 32 32 H 1.09000 * 109.48587 * 56.37401 * 19 5 4 33 33 H 1.08996 * 109.48517 * 176.41909 * 19 5 4 34 34 H 1.09001 * 109.62935 * 174.34111 * 20 19 5 35 35 H 1.09007 * 109.62567 * 294.90860 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8989 1.0257 0.0000 4 6 2.0447 -0.7321 -1.2438 5 6 3.5676 -0.8529 -1.1685 6 1 4.0039 0.1401 -1.0604 7 6 4.0825 -1.4912 -2.4329 8 8 3.3068 -1.8227 -3.3043 9 7 5.4051 -1.6936 -2.5953 10 6 5.9056 -2.3146 -3.8242 11 6 7.4069 -2.4257 -3.7555 12 1 7.9353 -2.0697 -2.8834 13 6 8.1057 -2.9827 -4.8054 14 7 7.4622 -3.4166 -5.8671 15 14 9.9666 -3.1210 -4.7198 16 1 10.4740 -3.7504 -5.9656 17 1 10.3478 -3.9557 -3.5523 18 1 10.5576 -1.7665 -4.5739 19 6 3.9608 -1.7146 0.0325 20 6 3.5182 -1.0195 1.3243 21 6 2.0381 -0.7226 1.2280 22 8 1.2814 -1.0537 2.1091 23 1 -0.3633 0.5065 0.8943 24 1 -0.3633 0.5212 -0.8857 25 1 -0.3633 -1.0275 -0.0085 26 1 1.7682 -0.1709 -2.1363 27 1 1.6027 -1.7275 -1.2886 28 1 6.0255 -1.4282 -1.8986 29 1 5.6259 -1.7016 -4.6810 30 1 5.4719 -3.3087 -3.9316 31 1 6.4959 -3.3451 -5.9113 32 1 3.4736 -2.6867 -0.0424 33 1 5.0423 -1.8497 0.0445 34 1 3.7056 -1.6744 2.1753 35 1 4.0712 -0.0881 1.4469 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116847702.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:17 Heat of formation + Delta-G solvation = -133.465096 kcal Electronic energy + Delta-G solvation = -17021.249359 eV Core-core repulsion = 14209.833436 eV Total energy + Delta-G solvation = -2811.415923 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.55376 -40.34908 -37.28792 -36.40565 -34.58680 -33.78504 -30.90389 -28.81599 -27.07345 -25.08963 -23.48620 -23.26628 -21.11056 -20.10879 -19.34051 -17.83772 -17.14099 -16.77847 -16.63817 -16.20507 -15.65966 -15.58404 -15.13780 -14.91779 -14.49118 -14.28348 -13.92953 -13.71365 -13.35197 -13.14939 -13.04971 -12.71583 -12.54219 -12.52378 -12.02295 -12.00028 -11.90922 -11.73613 -10.99174 -10.74532 -10.70150 -10.34215 -9.95273 -8.78142 -6.53988 0.93742 1.57570 1.64830 1.67681 1.84521 2.36903 2.59788 3.05681 3.09715 3.51099 3.64617 3.72249 3.89981 4.13957 4.19477 4.31201 4.37081 4.49994 4.57437 4.78796 4.82202 4.90593 4.92566 4.96937 4.99240 5.02512 5.19862 5.22727 5.27682 5.46083 5.56344 6.09352 6.32570 6.49362 6.80628 7.24943 7.42809 8.61187 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.048489 B = 0.004714 C = 0.004396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.307387 B = 5938.160642 C = 6368.023850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.134 4.134 3 H 0.139 0.861 4 C -0.084 4.084 5 C -0.098 4.098 6 H 0.139 0.861 7 C 0.499 3.501 8 O -0.603 6.603 9 N -0.700 5.700 10 C 0.251 3.749 11 C -0.628 4.628 12 H 0.079 0.921 13 C -0.033 4.033 14 N -0.932 5.932 15 Si 1.129 2.871 16 H -0.289 1.289 17 H -0.263 1.263 18 H -0.262 1.262 19 C -0.102 4.102 20 C -0.157 4.157 21 C 0.364 3.636 22 O -0.493 6.493 23 H 0.064 0.936 24 H 0.075 0.925 25 H 0.041 0.959 26 H 0.077 0.923 27 H 0.050 0.950 28 H 0.411 0.589 29 H -0.017 1.017 30 H -0.019 1.019 31 H 0.253 0.747 32 H 0.054 0.946 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.555 9.441 15.569 19.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.152 4.152 3 H 0.156 0.844 4 C -0.122 4.122 5 C -0.119 4.119 6 H 0.157 0.843 7 C 0.286 3.714 8 O -0.486 6.486 9 N -0.350 5.350 10 C 0.127 3.873 11 C -0.665 4.665 12 H 0.097 0.903 13 C -0.231 4.231 14 N -0.568 5.568 15 Si 0.948 3.052 16 H -0.215 1.215 17 H -0.188 1.188 18 H -0.187 1.187 19 C -0.140 4.140 20 C -0.194 4.194 21 C 0.242 3.758 22 O -0.368 6.368 23 H 0.083 0.917 24 H 0.094 0.906 25 H 0.061 0.939 26 H 0.096 0.904 27 H 0.069 0.931 28 H 0.247 0.753 29 H 0.001 0.999 30 H -0.001 1.001 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.116 0.884 34 H 0.116 0.884 35 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -5.174 8.510 14.587 17.663 hybrid contribution -1.508 0.169 0.384 1.566 sum -6.682 8.678 14.971 18.550 Atomic orbital electron populations 1.21650 0.93322 1.01939 1.02850 1.21926 0.97799 1.02417 0.93084 0.84373 1.21313 0.92722 1.00831 0.97366 1.21432 0.97474 1.02277 0.90747 0.84296 1.21520 0.82015 0.78381 0.89450 1.90643 1.57273 1.54101 1.46533 1.46051 1.07311 1.60826 1.20817 1.18670 0.94693 0.90577 0.83322 1.22437 0.91242 1.45579 1.07284 0.90316 1.27623 1.12044 0.92005 0.91468 1.70912 1.10003 1.45155 1.30702 0.82801 0.67747 0.78025 0.76612 1.21473 1.18819 1.18700 1.21494 1.03285 0.97902 0.91362 1.22305 0.93484 1.04880 0.98718 1.25377 0.91751 0.73393 0.85291 1.90384 1.61178 1.44147 1.41124 0.91741 0.90607 0.93930 0.90429 0.93118 0.75270 0.99926 1.00139 0.93762 0.92709 0.88448 0.88440 0.84460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 8.60 71.98 0.62 -1.95 16 2 C -0.13 -2.29 3.01 -11.28 -0.03 -2.32 16 3 H 0.14 1.52 8.14 -2.39 -0.02 1.50 16 4 C -0.08 -1.91 3.83 30.66 0.12 -1.80 16 5 C -0.10 -2.22 2.42 -11.57 -0.03 -2.25 16 6 H 0.14 2.13 8.14 -2.39 -0.02 2.11 16 7 C 0.50 18.33 7.15 87.66 0.63 18.96 16 8 O -0.60 -28.44 15.94 -3.04 -0.05 -28.49 16 9 N -0.70 -27.64 5.42 -466.78 -2.53 -30.17 16 10 C 0.25 13.28 4.74 85.63 0.41 13.69 16 11 C -0.63 -33.44 9.28 25.60 0.24 -33.20 16 12 H 0.08 3.78 7.60 -2.91 -0.02 3.76 16 13 C -0.03 -1.82 5.46 84.65 0.46 -1.36 16 14 N -0.93 -57.23 13.65 21.45 0.29 -56.94 16 15 Si 1.13 46.77 29.90 68.60 2.05 48.83 16 16 H -0.29 -12.33 7.11 99.48 0.71 -11.62 16 17 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 18 H -0.26 -9.81 7.11 99.48 0.71 -9.11 16 19 C -0.10 -1.93 5.15 30.66 0.16 -1.77 16 20 C -0.16 -2.22 6.17 30.10 0.19 -2.04 16 21 C 0.36 7.13 6.58 29.46 0.19 7.32 16 22 O -0.49 -13.20 16.86 -1.47 -0.02 -13.23 16 23 H 0.06 1.14 8.04 -2.38 -0.02 1.12 16 24 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.08 1.89 8.00 -2.39 -0.02 1.87 16 27 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.41 13.03 7.69 -92.72 -0.71 12.32 16 29 H -0.02 -1.01 8.01 -2.39 -0.02 -1.03 16 30 H -0.02 -1.14 8.01 -2.39 -0.02 -1.16 16 31 H 0.25 16.16 7.22 -92.71 -0.67 15.49 16 32 H 0.05 1.25 8.14 -2.39 -0.02 1.24 16 33 H 0.10 1.63 7.46 -2.39 -0.02 1.61 16 34 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.14 1.05 8.14 -2.38 -0.02 1.03 16 Total: -1.00 -75.15 292.62 3.15 -72.00 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: 0.47 Total: 14.71 kcal Atomic # 6 Polarization: -9.66 SS G_CDS: 2.94 Total: -6.72 kcal Atomic # 7 Polarization: -84.87 SS G_CDS: -2.24 Total: -87.10 kcal Atomic # 8 Polarization: -41.64 SS G_CDS: -0.07 Total: -41.71 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.05 Total: 48.83 kcal Total: -75.15 3.15 -72.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116847702.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.464 kcal (2) G-P(sol) polarization free energy of solvation -75.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds