Wall clock time and date at job start Sun Mar 29 2020 22:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46902 * 111.00073 * 2 1 4 4 H 1.09003 * 109.46960 * 35.00301 * 3 2 1 5 5 C 1.53002 * 109.46884 * 275.00075 * 3 2 1 6 6 C 1.53001 * 109.46861 * 155.00135 * 3 2 1 7 7 C 1.50706 * 109.46848 * 294.99791 * 6 3 2 8 8 N 1.29946 * 126.28426 * 270.02363 * 7 6 3 9 9 O 1.21309 * 110.24521 * 179.68915 * 8 7 6 10 10 C 1.33639 * 109.80928 * 0.46841 * 9 8 7 11 11 C 1.50706 * 126.55037 * 179.79972 * 10 9 8 12 12 C 1.52997 * 109.47238 * 269.69219 * 11 10 9 13 13 C 1.50696 * 109.47055 * 179.97438 * 12 11 10 14 14 H 1.08000 * 120.00290 * 0.02562 * 13 12 11 15 15 C 1.37887 * 120.00079 * 179.97438 * 13 12 11 16 16 N 1.31509 * 119.99493 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99862 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47053 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.46689 * 120.00372 * 17 15 13 20 20 H 1.48497 * 109.46761 * 240.00181 * 17 15 13 21 21 N 1.31128 * 106.90120 * 359.54177 * 10 9 8 22 22 H 1.08997 * 109.47268 * 59.99603 * 1 2 3 23 23 H 1.08995 * 109.47257 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47021 * 299.99970 * 1 2 3 25 25 H 1.00903 * 111.00027 * 123.95634 * 2 1 3 26 26 H 1.09003 * 109.47000 * 300.00033 * 5 3 2 27 27 H 1.08997 * 109.47137 * 60.00010 * 5 3 2 28 28 H 1.09000 * 109.46821 * 180.02562 * 5 3 2 29 29 H 1.08996 * 109.46965 * 174.99986 * 6 3 2 30 30 H 1.08999 * 109.47236 * 55.00184 * 6 3 2 31 31 H 1.09001 * 109.46953 * 29.68831 * 11 10 9 32 32 H 1.09000 * 109.47318 * 149.68429 * 11 10 9 33 33 H 1.09001 * 109.46832 * 299.99686 * 12 11 10 34 34 H 1.09004 * 109.47261 * 59.99705 * 12 11 10 35 35 H 0.96999 * 119.99718 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 1.3398 2.0123 0.5895 5 6 2.0608 1.8926 -1.4370 6 6 3.3988 1.3790 0.6096 7 6 3.3178 0.9830 2.0615 8 7 3.1545 1.7863 3.0697 9 8 3.1248 1.1576 4.1068 10 6 3.2810 -0.1448 3.8515 11 6 3.3076 -1.2609 4.8638 12 6 4.7472 -1.4968 5.3252 13 6 4.7736 -2.6124 6.3379 14 1 3.8556 -3.1044 6.6236 15 6 5.9701 -3.0059 6.8991 16 7 7.0880 -2.4072 6.5508 17 14 6.0030 -4.3893 8.1539 18 1 4.6230 -4.8927 8.3719 19 1 6.8596 -5.4932 7.6512 20 1 6.5523 -3.8811 9.4365 21 7 3.4011 -0.2668 2.5514 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8306 -0.5262 0.7814 26 1 2.7165 1.2516 -2.0265 27 1 1.0611 1.8871 -1.8713 28 1 2.4519 2.9100 -1.4371 29 1 3.8245 2.3791 0.5290 30 1 4.0312 0.6707 0.0744 31 1 2.6914 -0.9889 5.7208 32 1 2.9174 -2.1721 4.4104 33 1 5.3634 -1.7688 4.4682 34 1 5.1373 -0.5856 5.7787 35 1 7.9297 -2.6837 6.9459 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118172652.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:23 Heat of formation + Delta-G solvation = 46.927191 kcal Electronic energy + Delta-G solvation = -16757.017361 eV Core-core repulsion = 13985.716586 eV Total energy + Delta-G solvation = -2771.300775 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -45.19689 -37.82691 -35.43367 -34.45213 -32.71445 -31.53542 -30.17947 -27.97706 -25.89181 -25.12417 -23.25186 -22.22447 -21.05886 -20.09264 -17.73075 -17.10564 -16.42308 -16.06026 -15.35047 -14.94626 -14.56147 -14.09808 -13.70736 -13.27572 -12.94752 -12.58465 -12.49903 -12.31781 -12.07058 -11.85284 -11.61777 -11.52214 -11.28442 -11.03180 -10.94651 -10.70840 -10.61949 -10.16475 -10.02554 -9.35163 -9.21499 -8.59582 -8.47574 -6.11578 -4.16413 1.53261 2.54128 3.26742 3.29258 3.35120 3.38365 3.84940 4.04720 4.36200 4.42825 4.67712 4.96319 5.14916 5.25306 5.26070 5.33079 5.39020 5.54742 5.60938 5.64232 5.73509 5.82257 5.97841 6.07436 6.09169 6.19182 6.35887 6.58507 6.87166 7.29589 7.46333 7.53234 7.83906 8.19020 8.52842 8.89066 9.48799 10.99739 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.044072 B = 0.004415 C = 0.004289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.171900 B = 6340.451678 C = 6526.447299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.693 5.693 3 C 0.088 3.912 4 H 0.045 0.955 5 C -0.137 4.137 6 C -0.031 4.031 7 C 0.157 3.843 8 N -0.397 5.397 9 O 0.068 5.932 10 C 0.215 3.785 11 C -0.029 4.029 12 C 0.027 3.973 13 C -0.526 4.526 14 H 0.062 0.938 15 C 0.060 3.940 16 N -0.891 5.891 17 Si 0.897 3.103 18 H -0.271 1.271 19 H -0.283 1.283 20 H -0.283 1.283 21 N -0.495 5.495 22 H 0.063 0.937 23 H 0.068 0.932 24 H 0.018 0.982 25 H 0.355 0.645 26 H 0.066 0.934 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.096 0.904 30 H 0.104 0.896 31 H 0.090 0.910 32 H 0.100 0.900 33 H 0.027 0.973 34 H 0.023 0.977 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.418 6.650 -11.290 16.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.327 5.327 3 C -0.023 4.023 4 H 0.063 0.937 5 C -0.195 4.195 6 C -0.070 4.070 7 C -0.116 4.116 8 N -0.108 5.108 9 O 0.012 5.988 10 C -0.003 4.003 11 C -0.068 4.068 12 C -0.011 4.011 13 C -0.564 4.564 14 H 0.080 0.920 15 C -0.142 4.142 16 N -0.529 5.529 17 Si 0.725 3.275 18 H -0.196 1.196 19 H -0.209 1.209 20 H -0.209 1.209 21 N -0.229 5.229 22 H 0.082 0.918 23 H 0.087 0.913 24 H 0.036 0.964 25 H 0.176 0.824 26 H 0.085 0.915 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.114 0.886 30 H 0.122 0.878 31 H 0.109 0.891 32 H 0.119 0.881 33 H 0.045 0.955 34 H 0.042 0.958 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.204 7.229 -12.397 17.609 hybrid contribution 0.044 -0.501 1.789 1.858 sum -10.160 6.728 -10.609 16.157 Atomic orbital electron populations 1.22217 0.88077 1.01892 0.99995 1.60527 1.07619 1.13237 1.51299 1.21520 0.93767 0.90242 0.96805 0.93687 1.21766 1.02346 1.00316 0.95106 1.20195 0.98620 1.03566 0.84655 1.25784 1.01291 0.85712 0.98764 1.74559 1.22333 1.20944 0.92976 1.85278 1.65379 1.19294 1.28862 1.29684 0.91302 0.86316 0.93034 1.20776 1.04344 0.89287 0.92399 1.19165 0.87007 0.97912 0.96992 1.21102 0.93731 1.17921 1.23664 0.91966 1.25015 0.95546 0.96801 0.96870 1.69975 0.98304 1.41457 1.43189 0.86448 0.78232 0.81807 0.81009 1.19552 1.20906 1.20933 1.71927 1.22294 1.22009 1.06667 0.91775 0.91322 0.96389 0.82437 0.91508 0.92466 0.92317 0.88557 0.87755 0.89117 0.88129 0.95451 0.95826 0.92779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.50 60.06 0.63 0.93 16 2 N -0.69 -8.77 6.66 -114.01 -0.76 -9.53 16 3 C 0.09 1.02 2.64 -67.71 -0.18 0.84 16 4 H 0.05 0.56 7.80 -51.93 -0.40 0.15 16 5 C -0.14 -1.25 9.41 37.16 0.35 -0.90 16 6 C -0.03 -0.40 5.44 -27.88 -0.15 -0.55 16 7 C 0.16 2.63 6.78 -156.37 -1.06 1.57 16 8 N -0.40 -7.14 12.16 30.90 0.38 -6.77 16 9 O 0.07 1.26 11.31 18.11 0.20 1.47 16 10 C 0.22 4.02 7.77 -13.05 -0.10 3.92 16 11 C -0.03 -0.54 5.78 -27.88 -0.16 -0.71 16 12 C 0.03 0.67 4.95 -27.89 -0.14 0.53 16 13 C -0.53 -13.94 9.11 -34.44 -0.31 -14.25 16 14 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 16 N -0.89 -26.00 13.29 55.43 0.74 -25.27 16 17 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 18 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 N -0.49 -9.07 10.53 -9.87 -0.10 -9.18 16 22 H 0.06 0.60 7.44 -51.93 -0.39 0.21 16 23 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 24 H 0.02 0.20 8.06 -51.93 -0.42 -0.22 16 25 H 0.35 5.12 6.68 -39.29 -0.26 4.86 16 26 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.49 7.45 -51.93 -0.39 0.11 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.10 1.30 8.14 -51.93 -0.42 0.87 16 31 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 32 H 0.10 1.79 8.14 -51.93 -0.42 1.36 16 33 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 299.39 15.07 4.51 4.51 Total: -1.00 -29.43 299.39 -6.48 -35.91 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -5.21 Total: 0.17 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: -1.22 Total: -7.08 kcal Atomic # 7 Polarization: -50.98 SS G_CDS: 0.25 Total: -50.74 kcal Atomic # 8 Polarization: 1.26 SS G_CDS: 0.20 Total: 1.47 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -29.43 -6.48 -35.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118172652.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.839 kcal (2) G-P(sol) polarization free energy of solvation -29.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds