Wall clock time and date at job start Sun Mar 29 2020 22:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46902 * 111.00073 * 2 1 4 4 H 1.09003 * 109.46960 * 35.00301 * 3 2 1 5 5 C 1.53002 * 109.46884 * 275.00075 * 3 2 1 6 6 C 1.53001 * 109.46861 * 155.00135 * 3 2 1 7 7 C 1.50706 * 109.46848 * 294.99791 * 6 3 2 8 8 N 1.29946 * 126.28426 * 270.02363 * 7 6 3 9 9 O 1.21309 * 110.24521 * 179.68915 * 8 7 6 10 10 C 1.33639 * 109.80928 * 0.46841 * 9 8 7 11 11 C 1.50706 * 126.55037 * 179.79972 * 10 9 8 12 12 C 1.52997 * 109.47238 * 269.69219 * 11 10 9 13 13 C 1.50696 * 109.47055 * 179.97438 * 12 11 10 14 14 H 1.08000 * 120.00290 * 0.02562 * 13 12 11 15 15 C 1.37887 * 120.00079 * 179.97438 * 13 12 11 16 16 N 1.31509 * 119.99493 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99862 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47053 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.46689 * 120.00372 * 17 15 13 20 20 H 1.48497 * 109.46761 * 240.00181 * 17 15 13 21 21 N 1.31128 * 106.90120 * 359.54177 * 10 9 8 22 22 H 1.08997 * 109.47268 * 59.99603 * 1 2 3 23 23 H 1.08995 * 109.47257 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47021 * 299.99970 * 1 2 3 25 25 H 1.00903 * 111.00027 * 123.95634 * 2 1 3 26 26 H 1.09003 * 109.47000 * 300.00033 * 5 3 2 27 27 H 1.08997 * 109.47137 * 60.00010 * 5 3 2 28 28 H 1.09000 * 109.46821 * 180.02562 * 5 3 2 29 29 H 1.08996 * 109.46965 * 174.99986 * 6 3 2 30 30 H 1.08999 * 109.47236 * 55.00184 * 6 3 2 31 31 H 1.09001 * 109.46953 * 29.68831 * 11 10 9 32 32 H 1.09000 * 109.47318 * 149.68429 * 11 10 9 33 33 H 1.09001 * 109.46832 * 299.99686 * 12 11 10 34 34 H 1.09004 * 109.47261 * 59.99705 * 12 11 10 35 35 H 0.96999 * 119.99718 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 1.3398 2.0123 0.5895 5 6 2.0608 1.8926 -1.4370 6 6 3.3988 1.3790 0.6096 7 6 3.3178 0.9830 2.0615 8 7 3.1545 1.7863 3.0697 9 8 3.1248 1.1576 4.1068 10 6 3.2810 -0.1448 3.8515 11 6 3.3076 -1.2609 4.8638 12 6 4.7472 -1.4968 5.3252 13 6 4.7736 -2.6124 6.3379 14 1 3.8556 -3.1044 6.6236 15 6 5.9701 -3.0059 6.8991 16 7 7.0880 -2.4072 6.5508 17 14 6.0030 -4.3893 8.1539 18 1 4.6230 -4.8927 8.3719 19 1 6.8596 -5.4932 7.6512 20 1 6.5523 -3.8811 9.4365 21 7 3.4011 -0.2668 2.5514 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8306 -0.5262 0.7814 26 1 2.7165 1.2516 -2.0265 27 1 1.0611 1.8871 -1.8713 28 1 2.4519 2.9100 -1.4371 29 1 3.8245 2.3791 0.5290 30 1 4.0312 0.6707 0.0744 31 1 2.6914 -0.9889 5.7208 32 1 2.9174 -2.1721 4.4104 33 1 5.3634 -1.7688 4.4682 34 1 5.1373 -0.5856 5.7787 35 1 7.9297 -2.6837 6.9459 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118172652.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:22 Heat of formation + Delta-G solvation = 26.176428 kcal Electronic energy + Delta-G solvation = -16757.917181 eV Core-core repulsion = 13985.716586 eV Total energy + Delta-G solvation = -2772.200595 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -46.60816 -38.82510 -36.88622 -36.07272 -34.44219 -32.71274 -31.72377 -28.95428 -27.75623 -26.04809 -24.75443 -23.80208 -22.40442 -21.27209 -19.17726 -18.67192 -18.25503 -16.99659 -16.49657 -16.34953 -16.12741 -15.61350 -15.02225 -14.53271 -14.34454 -13.83509 -13.68041 -13.50186 -13.34503 -13.08151 -12.89589 -12.83964 -12.68138 -12.46564 -12.22706 -12.10601 -12.05633 -11.92332 -11.69579 -11.31801 -10.78483 -10.57637 -9.53957 -8.20549 -6.32468 0.08506 1.15765 1.46003 1.46819 1.59734 1.84073 2.43665 2.61772 2.96711 3.15298 3.23327 3.73897 3.87700 4.19828 4.23173 4.38940 4.44170 4.47866 4.52152 4.61563 4.68764 4.78921 4.89315 4.91613 4.92770 4.96424 5.02642 5.36477 5.43337 5.52799 5.77686 5.98262 6.13068 6.25234 6.83585 7.10176 7.37958 8.92149 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.044072 B = 0.004415 C = 0.004289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.171900 B = 6340.451678 C = 6526.447299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.702 5.702 3 C 0.090 3.910 4 H 0.037 0.963 5 C -0.131 4.131 6 C -0.032 4.032 7 C 0.164 3.836 8 N -0.409 5.409 9 O 0.058 5.942 10 C 0.209 3.791 11 C -0.014 4.014 12 C 0.033 3.967 13 C -0.538 4.538 14 H 0.079 0.921 15 C 0.000 4.000 16 N -0.935 5.935 17 Si 0.969 3.031 18 H -0.254 1.254 19 H -0.283 1.283 20 H -0.282 1.282 21 N -0.504 5.504 22 H 0.079 0.921 23 H 0.074 0.926 24 H 0.011 0.989 25 H 0.342 0.658 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.075 0.925 29 H 0.116 0.884 30 H 0.108 0.892 31 H 0.114 0.886 32 H 0.115 0.885 33 H -0.005 1.005 34 H -0.004 1.004 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.675 6.353 -11.764 17.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.335 5.335 3 C -0.021 4.021 4 H 0.055 0.945 5 C -0.189 4.189 6 C -0.071 4.071 7 C -0.109 4.109 8 N -0.122 5.122 9 O 0.004 5.996 10 C -0.010 4.010 11 C -0.053 4.053 12 C -0.005 4.005 13 C -0.576 4.576 14 H 0.097 0.903 15 C -0.198 4.198 16 N -0.575 5.575 17 Si 0.794 3.206 18 H -0.177 1.177 19 H -0.208 1.208 20 H -0.208 1.208 21 N -0.239 5.239 22 H 0.098 0.902 23 H 0.093 0.907 24 H 0.030 0.970 25 H 0.161 0.839 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.094 0.906 29 H 0.134 0.866 30 H 0.126 0.874 31 H 0.132 0.868 32 H 0.133 0.867 33 H 0.013 0.987 34 H 0.015 0.985 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.491 6.940 -12.869 18.596 hybrid contribution 0.431 -0.359 1.862 1.944 sum -11.060 6.581 -11.007 16.934 Atomic orbital electron populations 1.22281 0.87029 1.02485 1.00410 1.60634 1.08696 1.13637 1.50531 1.21579 0.92568 0.89717 0.98187 0.94511 1.21736 1.02951 1.01107 0.93097 1.20460 0.99767 1.04660 0.82195 1.26466 0.99480 0.84896 1.00097 1.74552 1.23340 1.21166 0.93131 1.85260 1.65730 1.19212 1.29349 1.29580 0.91800 0.86406 0.93239 1.20523 1.00996 0.90261 0.93520 1.18951 0.89964 0.96233 0.95355 1.21600 0.94334 1.18090 1.23531 0.90333 1.25997 0.95220 0.99483 0.99093 1.70120 0.99057 1.43457 1.44902 0.85323 0.78933 0.78312 0.78034 1.17746 1.20847 1.20757 1.71953 1.22278 1.23044 1.06630 0.90209 0.90734 0.97049 0.83914 0.91471 0.91770 0.90646 0.86601 0.87365 0.86772 0.86654 0.98694 0.98523 0.92777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 10.50 127.69 1.34 1.89 16 2 N -0.70 -16.85 6.66 -514.60 -3.43 -20.28 16 3 C 0.09 1.94 2.64 44.92 0.12 2.06 16 4 H 0.04 0.86 7.80 -2.39 -0.02 0.84 16 5 C -0.13 -2.06 9.41 71.98 0.68 -1.38 16 6 C -0.03 -0.76 5.44 29.85 0.16 -0.60 16 7 C 0.16 5.35 6.78 138.47 0.94 6.29 16 8 N -0.41 -14.53 12.16 -60.32 -0.73 -15.26 16 9 O 0.06 2.14 11.31 74.86 0.85 2.99 16 10 C 0.21 7.76 7.77 88.38 0.69 8.45 16 11 C -0.01 -0.53 5.78 29.85 0.17 -0.35 16 12 C 0.03 1.66 4.95 29.85 0.15 1.80 16 13 C -0.54 -28.36 9.11 25.60 0.23 -28.13 16 14 H 0.08 3.80 7.74 -2.91 -0.02 3.78 16 15 C 0.00 0.00 5.46 84.66 0.46 0.47 16 16 N -0.94 -55.68 13.29 21.45 0.28 -55.39 16 17 Si 0.97 42.29 29.54 68.60 2.03 44.32 16 18 H -0.25 -10.28 7.11 99.48 0.71 -9.58 16 19 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 20 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 21 N -0.50 -18.36 10.53 -303.20 -3.19 -21.56 16 22 H 0.08 1.32 7.44 -2.39 -0.02 1.30 16 23 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.01 0.23 8.06 -2.39 -0.02 0.21 16 25 H 0.34 9.61 6.68 -89.69 -0.60 9.01 16 26 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.06 0.93 7.45 -2.39 -0.02 0.92 16 28 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.12 2.32 8.14 -2.39 -0.02 2.30 16 30 H 0.11 2.54 8.14 -2.39 -0.02 2.52 16 31 H 0.11 3.69 8.14 -2.39 -0.02 3.67 16 32 H 0.12 3.95 8.14 -2.39 -0.02 3.93 16 33 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 34 H 0.00 -0.20 8.14 -2.38 -0.02 -0.22 16 35 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 Total: -1.00 -63.18 299.39 1.22 -61.96 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: 0.48 Total: 12.73 kcal Atomic # 6 Polarization: -14.45 SS G_CDS: 4.94 Total: -9.51 kcal Atomic # 7 Polarization: -105.42 SS G_CDS: -7.07 Total: -112.49 kcal Atomic # 8 Polarization: 2.14 SS G_CDS: 0.85 Total: 2.99 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Total: -63.18 1.22 -61.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118172652.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.138 kcal (2) G-P(sol) polarization free energy of solvation -63.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds