Wall clock time and date at job start Sun Mar 29 2020 22:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46902 * 110.99860 * 2 1 4 4 H 1.09003 * 109.46873 * 325.00265 * 3 2 1 5 5 C 1.53000 * 109.47302 * 85.00022 * 3 2 1 6 6 C 1.53001 * 109.47386 * 205.00199 * 3 2 1 7 7 C 1.50706 * 109.46848 * 64.99739 * 6 3 2 8 8 N 1.29946 * 126.28426 * 270.02363 * 7 6 3 9 9 O 1.21309 * 110.24521 * 179.68915 * 8 7 6 10 10 C 1.33639 * 109.80928 * 0.46841 * 9 8 7 11 11 C 1.50706 * 126.55037 * 179.79972 * 10 9 8 12 12 C 1.52997 * 109.47238 * 269.69219 * 11 10 9 13 13 C 1.50696 * 109.47055 * 179.97438 * 12 11 10 14 14 H 1.08000 * 120.00290 * 0.02562 * 13 12 11 15 15 C 1.37887 * 120.00079 * 179.97438 * 13 12 11 16 16 N 1.31514 * 119.99907 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 119.99654 * 0.02562 * 15 13 12 18 18 H 1.48499 * 109.47022 * 89.99986 * 17 15 13 19 19 H 1.48502 * 109.46769 * 209.99494 * 17 15 13 20 20 H 1.48495 * 109.47280 * 329.99669 * 17 15 13 21 21 N 1.31128 * 106.90120 * 359.54177 * 10 9 8 22 22 H 1.09001 * 109.47055 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.46925 * 299.99716 * 1 2 3 24 24 H 1.08993 * 109.47389 * 60.00427 * 1 2 3 25 25 H 1.00899 * 111.00086 * 236.04631 * 2 1 3 26 26 H 1.08996 * 109.47247 * 59.99995 * 5 3 2 27 27 H 1.09000 * 109.47553 * 180.02562 * 5 3 2 28 28 H 1.08997 * 109.46916 * 300.00024 * 5 3 2 29 29 H 1.08996 * 109.46965 * 304.99935 * 6 3 2 30 30 H 1.08999 * 109.47236 * 185.00132 * 6 3 2 31 31 H 1.09001 * 109.46953 * 29.68831 * 11 10 9 32 32 H 1.09000 * 109.47318 * 149.68429 * 11 10 9 33 33 H 1.09001 * 109.46832 * 299.99686 * 12 11 10 34 34 H 1.09004 * 109.47261 * 59.99705 * 12 11 10 35 35 H 0.96999 * 119.99682 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 1 1.3396 2.0123 -0.5894 5 6 2.0608 1.8927 1.4370 6 6 3.3987 1.3792 -0.6097 7 6 3.3177 0.9831 -2.0615 8 7 3.3977 -0.2244 -2.5348 9 8 3.2902 -0.2097 -3.7430 10 6 3.1366 1.0477 -4.1687 11 6 2.9737 1.4979 -5.5978 12 6 4.3492 1.7914 -6.2000 13 6 4.1863 2.2410 -7.6291 14 1 3.2003 2.3108 -8.0642 15 6 5.2960 2.5642 -8.3809 16 7 5.1537 2.9570 -9.6280 17 14 7.0014 2.4442 -7.6281 18 1 7.5493 1.0833 -7.8582 19 1 7.8930 3.4500 -8.2595 20 1 6.9175 2.7038 -6.1685 21 7 3.1491 1.8145 -3.1051 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5137 -0.8899 25 1 1.8306 -0.5261 -0.7814 26 1 2.7165 1.2519 2.0264 27 1 2.4510 2.9105 1.4370 28 1 1.0611 1.8872 1.8713 29 1 4.0311 0.6709 -0.0746 30 1 3.8244 2.3794 -0.5290 31 1 2.4856 0.7112 -6.1731 32 1 2.3639 2.4009 -5.6270 33 1 4.8373 2.5781 -5.6247 34 1 4.9589 0.8883 -6.1708 35 1 5.9345 3.1840 -10.1569 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118172653.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:24 Heat of formation + Delta-G solvation = 50.782700 kcal Electronic energy + Delta-G solvation = -16774.689536 eV Core-core repulsion = 14003.555949 eV Total energy + Delta-G solvation = -2771.133587 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -45.32522 -37.90929 -35.62514 -34.57170 -32.67257 -31.64921 -30.58960 -28.03719 -26.27563 -25.22917 -23.42585 -21.95013 -20.88856 -20.34144 -17.86546 -17.30335 -16.75250 -16.15107 -15.58115 -14.90204 -14.47340 -14.13812 -13.84311 -13.41508 -13.02812 -12.83067 -12.71702 -12.43761 -12.08474 -12.02990 -11.86367 -11.61287 -11.44242 -11.12770 -11.03954 -10.79573 -10.49756 -10.24522 -9.92576 -9.46717 -9.40529 -8.72303 -8.65656 -6.16326 -4.17186 1.39596 2.42316 3.16432 3.24955 3.33040 3.36482 3.75692 3.91640 4.27608 4.35578 4.59628 4.91398 5.04789 5.15482 5.17518 5.25222 5.34001 5.46882 5.54848 5.60864 5.63533 5.70782 5.83423 5.94811 6.01227 6.02171 6.22990 6.39999 6.74979 6.97726 7.10950 7.12362 7.58167 8.35253 8.40249 8.85484 9.44217 10.96262 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.045372 B = 0.004665 C = 0.004512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.972001 B = 6000.423434 C = 6204.555466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.694 5.694 3 C 0.086 3.914 4 H 0.051 0.949 5 C -0.137 4.137 6 C -0.031 4.031 7 C 0.159 3.841 8 N -0.396 5.396 9 O 0.069 5.931 10 C 0.210 3.790 11 C -0.020 4.020 12 C -0.007 4.007 13 C -0.527 4.527 14 H 0.078 0.922 15 C 0.073 3.927 16 N -0.896 5.896 17 Si 0.877 3.123 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.266 1.266 21 N -0.493 5.493 22 H 0.067 0.933 23 H 0.066 0.934 24 H 0.020 0.980 25 H 0.347 0.653 26 H 0.064 0.936 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.098 0.902 30 H 0.103 0.897 31 H 0.097 0.903 32 H 0.106 0.894 33 H 0.026 0.974 34 H 0.019 0.981 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.249 -3.661 18.269 19.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.327 5.327 3 C -0.025 4.025 4 H 0.069 0.931 5 C -0.195 4.195 6 C -0.070 4.070 7 C -0.114 4.114 8 N -0.107 5.107 9 O 0.013 5.987 10 C -0.009 4.009 11 C -0.059 4.059 12 C -0.046 4.046 13 C -0.564 4.564 14 H 0.096 0.904 15 C -0.129 4.129 16 N -0.534 5.534 17 Si 0.704 3.296 18 H -0.200 1.200 19 H -0.211 1.211 20 H -0.191 1.191 21 N -0.227 5.227 22 H 0.086 0.914 23 H 0.084 0.916 24 H 0.039 0.961 25 H 0.167 0.833 26 H 0.083 0.917 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.116 0.884 30 H 0.121 0.879 31 H 0.115 0.885 32 H 0.124 0.876 33 H 0.044 0.956 34 H 0.037 0.963 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.008 -3.990 19.505 20.795 hybrid contribution 0.799 0.236 -0.891 1.220 sum -5.209 -3.754 18.614 19.690 Atomic orbital electron populations 1.22228 0.87814 1.01877 1.00337 1.60556 1.07915 1.13548 1.50678 1.21540 0.93931 0.90052 0.97011 0.93056 1.21756 1.02368 1.00460 0.94885 1.20207 0.98530 1.04071 0.84207 1.25824 1.01078 0.85469 0.99055 1.74564 1.22132 1.22634 0.91368 1.85284 1.65130 1.32108 1.16178 1.29687 0.92001 0.79105 1.00079 1.20554 1.03037 1.02409 0.79889 1.19619 0.90378 0.97216 0.97349 1.20922 0.95626 1.45914 0.93982 0.90365 1.24944 0.99126 0.94227 0.94618 1.69888 1.30508 1.45051 1.07976 0.86825 0.84488 0.78289 0.80038 1.20044 1.21083 1.19079 1.71951 1.21860 1.31612 0.97256 0.91410 0.91554 0.96091 0.83339 0.91683 0.92064 0.92411 0.88365 0.87879 0.88463 0.87619 0.95575 0.96257 0.92443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.50 60.06 0.63 0.90 16 2 N -0.69 -8.11 6.66 -114.01 -0.76 -8.87 16 3 C 0.09 0.94 2.64 -67.71 -0.18 0.76 16 4 H 0.05 0.62 7.80 -51.93 -0.40 0.22 16 5 C -0.14 -1.18 9.41 37.16 0.35 -0.83 16 6 C -0.03 -0.37 5.44 -27.88 -0.15 -0.52 16 7 C 0.16 2.50 6.80 -156.37 -1.06 1.44 16 8 N -0.40 -6.59 11.12 30.90 0.34 -6.24 16 9 O 0.07 1.20 11.31 18.11 0.20 1.40 16 10 C 0.21 3.73 7.77 -13.05 -0.10 3.63 16 11 C -0.02 -0.36 5.78 -27.88 -0.16 -0.52 16 12 C -0.01 -0.16 4.02 -27.89 -0.11 -0.27 16 13 C -0.53 -14.10 9.66 -34.44 -0.33 -14.44 16 14 H 0.08 2.20 7.99 -52.49 -0.42 1.78 16 15 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 16 N -0.90 -26.62 13.96 55.43 0.77 -25.84 16 17 Si 0.88 21.15 27.47 -169.99 -4.67 16.48 16 18 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16 21 N -0.49 -8.75 11.55 -9.87 -0.11 -8.87 16 22 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.07 0.58 7.44 -51.93 -0.39 0.19 16 24 H 0.02 0.22 8.05 -51.93 -0.42 -0.20 16 25 H 0.35 4.56 6.69 -39.29 -0.26 4.30 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.47 7.45 -51.93 -0.39 0.09 16 29 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 31 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16 32 H 0.11 1.84 8.14 -51.93 -0.42 1.42 16 33 H 0.03 0.61 7.20 -51.93 -0.37 0.24 16 34 H 0.02 0.43 7.57 -51.93 -0.39 0.04 16 35 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 295.80 15.07 4.46 4.46 Total: -1.00 -29.68 295.80 -6.15 -35.84 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: -5.17 Total: -0.46 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: -1.22 Total: -7.89 kcal Atomic # 7 Polarization: -50.07 SS G_CDS: 0.24 Total: -49.82 kcal Atomic # 8 Polarization: 1.20 SS G_CDS: 0.20 Total: 1.40 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.67 Total: 16.48 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -29.68 -6.15 -35.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118172653.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.618 kcal (2) G-P(sol) polarization free energy of solvation -29.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds