Wall clock time and date at job start Sun Mar 29 2020 22:06:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47207 * 2 1 4 4 C 1.50700 * 109.47353 * 120.00811 * 2 1 3 5 5 H 1.07997 * 120.00725 * 119.99646 * 4 2 1 6 6 C 1.37886 * 119.99453 * 299.99892 * 4 2 1 7 7 N 1.31511 * 120.00084 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99798 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.47246 * 59.99735 * 8 6 4 10 10 H 1.48500 * 109.47209 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47440 * 300.00059 * 8 6 4 12 12 C 1.50709 * 109.47095 * 240.00424 * 2 1 3 13 13 O 1.21279 * 119.99689 * 266.48764 * 12 2 1 14 14 N 1.34771 * 119.99788 * 86.48262 * 12 2 1 15 15 C 1.45315 * 118.83511 * 354.91437 * 14 12 2 16 16 C 1.51707 * 112.00784 * 235.89617 * 15 14 12 17 17 C 1.51270 * 112.95231 * 318.23373 * 16 15 14 18 18 O 1.42900 * 114.33918 * 165.31658 * 17 16 15 19 19 C 1.52112 * 120.85795 * 308.62818 * 17 16 15 20 20 C 1.51924 * 120.65779 * 20.72041 * 17 16 15 21 21 H 1.09004 * 117.31245 * 142.93603 * 20 17 16 22 22 C 1.45544 * 118.82788 * 174.89527 * 14 12 2 23 23 H 1.09001 * 109.46935 * 186.36405 * 1 2 3 24 24 H 1.09000 * 109.46879 * 306.36055 * 1 2 3 25 25 H 1.08999 * 109.47316 * 66.36375 * 1 2 3 26 26 H 0.96996 * 120.00294 * 180.02562 * 7 6 4 27 27 H 1.09008 * 108.97102 * 356.54386 * 15 14 12 28 28 H 1.09000 * 108.97540 * 115.24199 * 15 14 12 29 29 H 1.09000 * 108.78425 * 79.13121 * 16 15 14 30 30 H 1.09001 * 108.78707 * 197.33941 * 16 15 14 31 31 H 0.96705 * 114.00048 * 34.42118 * 18 17 16 32 32 H 1.08993 * 117.54479 * 217.65149 * 19 17 16 33 33 H 1.09007 * 117.53578 * 2.92157 * 19 17 16 34 34 H 1.09002 * 109.20787 * 260.81014 * 22 14 12 35 35 H 1.09001 * 109.20986 * 20.18117 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7106 1.2303 5 1 2.6532 -1.5887 1.1312 6 6 1.6993 -0.2396 2.4827 7 7 0.9436 0.8300 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 3.8064 -1.1213 4.0080 10 1 1.8270 -0.4203 5.2204 11 1 1.8258 -2.5205 4.0075 12 6 2.0324 -0.7104 -1.2306 13 8 2.2951 -1.8934 -1.1830 14 7 2.1894 -0.0309 -2.3839 15 6 1.7622 1.3567 -2.4436 16 6 0.7688 1.5980 -3.5645 17 6 1.1366 0.8789 -4.8435 18 8 0.0804 0.8072 -5.8034 19 6 2.5279 1.0156 -5.4431 20 6 2.0761 -0.3147 -4.8186 21 1 1.8644 -1.1323 -5.5077 22 6 2.7814 -0.7131 -3.5252 23 1 -0.3633 -1.0214 0.1139 24 1 -0.3633 0.6093 0.8276 25 1 -0.3634 0.4120 -0.9414 26 1 0.7096 1.1615 3.4844 27 1 1.2981 1.6257 -1.4946 28 1 2.6353 1.9899 -2.6014 29 1 -0.2149 1.2579 -3.2409 30 1 0.7192 2.6682 -3.7652 31 1 -0.4967 1.5832 -5.8120 32 1 2.6063 1.0621 -6.5292 33 1 3.2581 1.6083 -4.8919 34 1 3.8360 -0.4465 -3.5949 35 1 2.6921 -1.7903 -3.3850 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118788931.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:33 Heat of formation + Delta-G solvation = -56.984016 kcal Electronic energy + Delta-G solvation = -17786.716647 eV Core-core repulsion = 14978.617193 eV Total energy + Delta-G solvation = -2808.099454 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.31056 -38.31863 -35.47196 -34.01167 -33.31803 -31.26463 -30.36115 -26.57544 -25.19682 -24.01746 -22.45929 -21.55162 -19.68233 -18.26031 -16.92478 -16.49133 -15.92226 -15.55544 -14.79084 -14.62858 -14.44429 -13.93654 -13.84872 -13.04893 -12.91242 -12.71751 -12.30039 -11.86295 -11.60812 -11.43943 -11.21195 -11.01066 -10.89647 -10.71534 -10.69636 -10.28223 -10.10436 -9.93593 -9.29587 -8.99942 -8.59889 -8.31850 -8.11526 -6.05888 -4.08527 3.35036 3.37640 3.40544 3.45580 3.63341 3.77256 3.99423 4.45309 4.60606 4.72171 4.83749 5.13737 5.27070 5.27938 5.45350 5.65152 5.66968 5.77127 5.88849 5.94059 6.01963 6.10559 6.15584 6.30457 6.63728 6.80964 6.95275 7.16007 7.41893 7.50985 7.73390 7.93481 8.04709 8.34821 8.96540 9.17615 9.56203 11.02108 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.046077 B = 0.006322 C = 0.005919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.529794 B = 4427.902072 C = 4729.178432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.031 3.969 3 H 0.049 0.951 4 C -0.502 4.502 5 H 0.068 0.932 6 C 0.060 3.940 7 N -0.896 5.896 8 Si 0.901 3.099 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.276 1.276 12 C 0.520 3.480 13 O -0.544 6.544 14 N -0.622 5.622 15 C 0.112 3.888 16 C -0.124 4.124 17 C 0.082 3.918 18 O -0.538 6.538 19 C -0.201 4.201 20 C -0.144 4.144 21 H 0.113 0.887 22 C 0.142 3.858 23 H 0.036 0.964 24 H 0.091 0.909 25 H 0.011 0.989 26 H 0.262 0.738 27 H 0.110 0.890 28 H 0.058 0.942 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.379 0.621 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.062 0.938 35 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.105 5.369 -13.186 14.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.010 3.990 3 H 0.067 0.933 4 C -0.540 4.540 5 H 0.087 0.913 6 C -0.140 4.140 7 N -0.535 5.535 8 Si 0.729 3.271 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.201 1.201 12 C 0.312 3.688 13 O -0.419 6.419 14 N -0.357 5.357 15 C -0.012 4.012 16 C -0.163 4.163 17 C 0.040 3.960 18 O -0.343 6.343 19 C -0.238 4.238 20 C -0.163 4.163 21 H 0.131 0.869 22 C 0.019 3.981 23 H 0.055 0.945 24 H 0.109 0.891 25 H 0.030 0.970 26 H 0.072 0.928 27 H 0.128 0.872 28 H 0.076 0.924 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.227 0.773 32 H 0.117 0.883 33 H 0.117 0.883 34 H 0.080 0.920 35 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.244 4.261 -13.138 13.814 hybrid contribution 0.005 0.184 0.685 0.709 sum 0.249 4.445 -12.453 13.225 Atomic orbital electron populations 1.21726 0.96119 1.01259 0.99567 1.18912 0.94302 0.96565 0.89243 0.93346 1.21031 1.31367 1.12519 0.89087 0.91335 1.24926 0.95030 0.95028 0.99054 1.69859 1.36959 1.22980 1.23722 0.86504 0.79209 0.79834 0.81597 1.20218 1.21310 1.20124 1.22136 0.75005 0.87378 0.84298 1.90520 1.50450 1.16418 1.84557 1.47509 1.63841 1.12262 1.12069 1.20990 0.97288 0.82888 1.00066 1.21257 1.01478 1.00281 0.93237 1.20738 0.84292 1.01308 0.89625 1.86503 1.43467 1.46011 1.58351 1.23764 0.98457 1.00694 1.00892 1.22780 1.01203 0.92748 0.99542 0.86876 1.20589 0.95233 0.99336 0.82940 0.94451 0.89087 0.96989 0.92846 0.87196 0.92412 0.90140 0.90066 0.77318 0.88317 0.88281 0.91979 0.88910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.01 8.53 37.16 0.32 -2.69 16 2 C 0.03 0.76 1.76 -92.92 -0.16 0.60 16 3 H 0.05 1.19 6.49 -51.93 -0.34 0.86 16 4 C -0.50 -14.19 8.33 -34.44 -0.29 -14.47 16 5 H 0.07 2.04 7.06 -52.49 -0.37 1.67 16 6 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 7 N -0.90 -24.78 11.39 55.43 0.63 -24.15 16 8 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 9 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 C 0.52 12.13 6.70 -10.98 -0.07 12.05 16 13 O -0.54 -14.43 15.15 5.56 0.08 -14.35 16 14 N -0.62 -11.45 3.01 -176.40 -0.53 -11.98 16 15 C 0.11 1.68 5.53 -5.33 -0.03 1.65 16 16 C -0.12 -1.52 5.76 -28.26 -0.16 -1.68 16 17 C 0.08 1.05 3.21 -92.49 -0.30 0.75 16 18 O -0.54 -6.62 13.66 -35.23 -0.48 -7.10 16 19 C -0.20 -2.33 9.63 -26.80 -0.26 -2.58 16 20 C -0.14 -2.00 6.21 -90.98 -0.57 -2.56 16 21 H 0.11 1.55 8.14 -51.93 -0.42 1.12 16 22 C 0.14 2.30 6.25 -4.76 -0.03 2.27 16 23 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 24 H 0.09 2.27 6.27 -51.93 -0.33 1.94 16 25 H 0.01 0.23 7.32 -51.93 -0.38 -0.15 16 26 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 27 H 0.11 1.81 4.58 -51.92 -0.24 1.57 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.38 2.94 8.93 45.56 0.41 3.35 16 32 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 33 H 0.10 1.09 8.12 -51.93 -0.42 0.66 16 34 H 0.06 0.92 8.12 -51.93 -0.42 0.50 16 35 H 0.09 1.66 6.96 -51.93 -0.36 1.30 16 LS Contribution 282.29 15.07 4.25 4.25 Total: -1.00 -31.93 282.29 -6.83 -38.76 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -4.12 Total: 3.00 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: -1.64 Total: -5.10 kcal Atomic # 7 Polarization: -36.23 SS G_CDS: 0.10 Total: -36.13 kcal Atomic # 8 Polarization: -21.05 SS G_CDS: -0.40 Total: -21.45 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -31.93 -6.83 -38.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118788931.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.223 kcal (2) G-P(sol) polarization free energy of solvation -31.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds