Wall clock time and date at job start Sun Mar 29 2020 22:06:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47207 * 2 1 4 4 C 1.50700 * 109.47353 * 120.00811 * 2 1 3 5 5 H 1.07997 * 120.00725 * 119.99646 * 4 2 1 6 6 C 1.37886 * 119.99453 * 299.99892 * 4 2 1 7 7 N 1.31511 * 120.00084 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99798 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.47246 * 59.99735 * 8 6 4 10 10 H 1.48500 * 109.47209 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47440 * 300.00059 * 8 6 4 12 12 C 1.50709 * 109.47095 * 240.00424 * 2 1 3 13 13 O 1.21279 * 119.99689 * 266.48764 * 12 2 1 14 14 N 1.34771 * 119.99788 * 86.48262 * 12 2 1 15 15 C 1.45315 * 118.83511 * 354.91437 * 14 12 2 16 16 C 1.51707 * 112.00784 * 235.89617 * 15 14 12 17 17 C 1.51270 * 112.95231 * 318.23373 * 16 15 14 18 18 O 1.42900 * 114.33918 * 165.31658 * 17 16 15 19 19 C 1.52112 * 120.85795 * 308.62818 * 17 16 15 20 20 C 1.51924 * 120.65779 * 20.72041 * 17 16 15 21 21 H 1.09004 * 117.31245 * 142.93603 * 20 17 16 22 22 C 1.45544 * 118.82788 * 174.89527 * 14 12 2 23 23 H 1.09001 * 109.46935 * 186.36405 * 1 2 3 24 24 H 1.09000 * 109.46879 * 306.36055 * 1 2 3 25 25 H 1.08999 * 109.47316 * 66.36375 * 1 2 3 26 26 H 0.96996 * 120.00294 * 180.02562 * 7 6 4 27 27 H 1.09008 * 108.97102 * 356.54386 * 15 14 12 28 28 H 1.09000 * 108.97540 * 115.24199 * 15 14 12 29 29 H 1.09000 * 108.78425 * 79.13121 * 16 15 14 30 30 H 1.09001 * 108.78707 * 197.33941 * 16 15 14 31 31 H 0.96705 * 114.00048 * 34.42118 * 18 17 16 32 32 H 1.08993 * 117.54479 * 217.65149 * 19 17 16 33 33 H 1.09007 * 117.53578 * 2.92157 * 19 17 16 34 34 H 1.09002 * 109.20787 * 260.81014 * 22 14 12 35 35 H 1.09001 * 109.20986 * 20.18117 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7106 1.2303 5 1 2.6532 -1.5887 1.1312 6 6 1.6993 -0.2396 2.4827 7 7 0.9436 0.8300 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 3.8064 -1.1213 4.0080 10 1 1.8270 -0.4203 5.2204 11 1 1.8258 -2.5205 4.0075 12 6 2.0324 -0.7104 -1.2306 13 8 2.2951 -1.8934 -1.1830 14 7 2.1894 -0.0309 -2.3839 15 6 1.7622 1.3567 -2.4436 16 6 0.7688 1.5980 -3.5645 17 6 1.1366 0.8789 -4.8435 18 8 0.0804 0.8072 -5.8034 19 6 2.5279 1.0156 -5.4431 20 6 2.0761 -0.3147 -4.8186 21 1 1.8644 -1.1323 -5.5077 22 6 2.7814 -0.7131 -3.5252 23 1 -0.3633 -1.0214 0.1139 24 1 -0.3633 0.6093 0.8276 25 1 -0.3634 0.4120 -0.9414 26 1 0.7096 1.1615 3.4844 27 1 1.2981 1.6257 -1.4946 28 1 2.6353 1.9899 -2.6014 29 1 -0.2149 1.2579 -3.2409 30 1 0.7192 2.6682 -3.7652 31 1 -0.4967 1.5832 -5.8120 32 1 2.6063 1.0621 -6.5292 33 1 3.2581 1.6083 -4.8919 34 1 3.8360 -0.4465 -3.5949 35 1 2.6921 -1.7903 -3.3850 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118788931.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:33 Heat of formation + Delta-G solvation = -79.988634 kcal Electronic energy + Delta-G solvation = -17787.714202 eV Core-core repulsion = 14978.617193 eV Total energy + Delta-G solvation = -2809.097009 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.64512 -39.76353 -36.76308 -35.92118 -34.64266 -32.66753 -32.11241 -27.91939 -27.27677 -25.23257 -24.18650 -22.59228 -21.16899 -19.45424 -18.48350 -18.26279 -17.37626 -17.11144 -16.38463 -16.21552 -15.65849 -15.27102 -15.04672 -14.63526 -14.41904 -14.12864 -13.88634 -13.36307 -13.02233 -12.96587 -12.69399 -12.66523 -12.49106 -12.26429 -12.24631 -12.08988 -12.04981 -11.07294 -11.04360 -10.60844 -10.26365 -10.22759 -9.60239 -8.16778 -6.26479 1.41196 1.42840 1.51035 1.84050 2.10286 2.44926 2.69747 3.04430 3.13243 3.59629 3.66724 3.80720 3.94680 4.13268 4.32793 4.39945 4.64169 4.68682 4.71275 4.76303 4.85125 4.87686 4.89227 5.00997 5.02162 5.13725 5.15333 5.43741 5.67941 5.75989 5.90236 6.15384 6.53188 6.78169 6.81547 7.36084 7.45833 8.89425 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.046077 B = 0.006322 C = 0.005919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.529794 B = 4427.902072 C = 4729.178432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.030 3.970 3 H 0.051 0.949 4 C -0.533 4.533 5 H 0.041 0.959 6 C 0.025 3.975 7 N -0.907 5.907 8 Si 0.954 3.046 9 H -0.274 1.274 10 H -0.272 1.272 11 H -0.280 1.280 12 C 0.516 3.484 13 O -0.590 6.590 14 N -0.612 5.612 15 C 0.102 3.898 16 C -0.117 4.117 17 C 0.082 3.918 18 O -0.550 6.550 19 C -0.173 4.173 20 C -0.169 4.169 21 H 0.110 0.890 22 C 0.143 3.857 23 H 0.015 0.985 24 H 0.075 0.925 25 H 0.045 0.955 26 H 0.267 0.733 27 H 0.095 0.905 28 H 0.083 0.917 29 H 0.072 0.928 30 H 0.121 0.879 31 H 0.399 0.601 32 H 0.112 0.888 33 H 0.111 0.889 34 H 0.077 0.923 35 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.148 7.234 -14.313 16.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.009 3.991 3 H 0.069 0.931 4 C -0.571 4.571 5 H 0.059 0.941 6 C -0.175 4.175 7 N -0.546 5.546 8 Si 0.780 3.220 9 H -0.199 1.199 10 H -0.197 1.197 11 H -0.206 1.206 12 C 0.307 3.693 13 O -0.469 6.469 14 N -0.345 5.345 15 C -0.021 4.021 16 C -0.155 4.155 17 C 0.040 3.960 18 O -0.359 6.359 19 C -0.210 4.210 20 C -0.188 4.188 21 H 0.128 0.872 22 C 0.020 3.980 23 H 0.034 0.966 24 H 0.094 0.906 25 H 0.064 0.936 26 H 0.076 0.924 27 H 0.113 0.887 28 H 0.102 0.898 29 H 0.091 0.909 30 H 0.139 0.861 31 H 0.250 0.750 32 H 0.130 0.870 33 H 0.129 0.871 34 H 0.095 0.905 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.183 6.191 -14.305 15.588 hybrid contribution 0.008 -0.353 0.972 1.035 sum 0.191 5.837 -13.333 14.556 Atomic orbital electron populations 1.21530 0.95286 0.99714 1.00702 1.18828 0.94957 0.96245 0.89096 0.93141 1.21182 1.32173 1.12471 0.91294 0.94051 1.25541 0.95075 0.95693 1.01219 1.69918 1.36849 1.23307 1.24533 0.85676 0.78801 0.78611 0.78942 1.19909 1.19671 1.20612 1.21863 0.75100 0.86828 0.85471 1.90490 1.52772 1.18185 1.85502 1.47467 1.62476 1.13427 1.11129 1.21256 0.99128 0.80937 1.00739 1.21226 0.99794 1.02717 0.91797 1.20748 0.85084 1.00030 0.90098 1.86468 1.43811 1.47691 1.57944 1.23795 0.97616 0.97932 1.01678 1.22676 1.03589 0.94112 0.98437 0.87151 1.20655 0.96351 0.97752 0.83238 0.96600 0.90578 0.93637 0.92407 0.88687 0.89844 0.90928 0.86064 0.74966 0.86981 0.87089 0.90469 0.91562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.38 8.53 71.98 0.61 -4.76 16 2 C 0.03 1.50 1.76 -12.28 -0.02 1.48 16 3 H 0.05 2.50 6.49 -2.39 -0.02 2.48 16 4 C -0.53 -30.96 8.33 25.60 0.21 -30.74 16 5 H 0.04 2.58 7.06 -2.91 -0.02 2.55 16 6 C 0.02 1.36 5.30 84.66 0.45 1.81 16 7 N -0.91 -50.01 11.39 21.45 0.24 -49.77 16 8 Si 0.95 44.63 29.54 68.60 2.03 46.66 16 9 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 10 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 11 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 12 C 0.52 24.57 6.70 87.66 0.59 25.15 16 13 O -0.59 -32.65 15.15 -3.03 -0.05 -32.70 16 14 N -0.61 -22.16 3.01 -830.40 -2.50 -24.66 16 15 C 0.10 2.83 5.53 86.18 0.48 3.30 16 16 C -0.12 -2.46 5.76 29.60 0.17 -2.29 16 17 C 0.08 1.83 3.21 -12.01 -0.04 1.79 16 18 O -0.55 -11.77 13.66 -148.98 -2.04 -13.80 16 19 C -0.17 -3.37 9.63 30.55 0.29 -3.07 16 20 C -0.17 -4.41 6.21 -11.03 -0.07 -4.47 16 21 H 0.11 2.92 8.14 -2.38 -0.02 2.90 16 22 C 0.14 4.55 6.25 86.43 0.54 5.09 16 23 H 0.01 0.76 8.14 -2.39 -0.02 0.74 16 24 H 0.08 3.80 6.27 -2.39 -0.01 3.78 16 25 H 0.04 1.77 7.32 -2.39 -0.02 1.76 16 26 H 0.27 13.91 8.31 -92.71 -0.77 13.14 16 27 H 0.09 2.96 4.58 -2.38 -0.01 2.95 16 28 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.40 4.70 8.93 -74.05 -0.66 4.03 16 32 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.11 1.93 8.12 -2.38 -0.02 1.91 16 34 H 0.08 2.21 8.12 -2.39 -0.02 2.19 16 35 H 0.07 2.46 6.96 -2.39 -0.02 2.44 16 Total: -1.00 -70.08 282.29 1.34 -68.73 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: 0.44 Total: 12.25 kcal Atomic # 6 Polarization: -9.93 SS G_CDS: 3.22 Total: -6.71 kcal Atomic # 7 Polarization: -72.17 SS G_CDS: -2.25 Total: -74.43 kcal Atomic # 8 Polarization: -44.42 SS G_CDS: -2.08 Total: -46.50 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -70.08 1.34 -68.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118788931.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.255 kcal (2) G-P(sol) polarization free energy of solvation -70.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds