Wall clock time and date at job start Sun Mar 29 2020 22:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46846 * 2 1 4 4 C 1.50700 * 109.47054 * 240.00853 * 2 1 3 5 5 H 1.08002 * 119.99375 * 245.28994 * 4 2 1 6 6 C 1.37874 * 120.00579 * 65.28995 * 4 2 1 7 7 N 1.31520 * 119.99722 * 5.31153 * 6 4 2 8 8 Si 1.86792 * 120.00330 * 185.31538 * 6 4 2 9 9 H 1.48498 * 109.47565 * 94.99534 * 8 6 4 10 10 H 1.48499 * 109.47270 * 214.99667 * 8 6 4 11 11 H 1.48501 * 109.47051 * 334.99136 * 8 6 4 12 12 C 1.50695 * 109.47306 * 120.00179 * 2 1 3 13 13 O 1.21282 * 119.99739 * 113.85288 * 12 2 1 14 14 N 1.34773 * 120.00418 * 293.85405 * 12 2 1 15 15 C 1.45318 * 118.82801 * 356.66260 * 14 12 2 16 16 C 1.51701 * 112.00809 * 235.86880 * 15 14 12 17 17 C 1.51279 * 112.95414 * 318.23866 * 16 15 14 18 18 O 1.42896 * 114.33609 * 165.31116 * 17 16 15 19 19 C 1.52111 * 120.85160 * 308.62932 * 17 16 15 20 20 C 1.51976 * 120.67350 * 20.75196 * 17 16 15 21 21 H 1.08994 * 117.35249 * 142.88081 * 20 17 16 22 22 C 1.45535 * 118.83267 * 176.64101 * 14 12 2 23 23 H 1.09003 * 109.47112 * 294.32802 * 1 2 3 24 24 H 1.09000 * 109.47547 * 54.32956 * 1 2 3 25 25 H 1.08999 * 109.46830 * 174.33122 * 1 2 3 26 26 H 0.97000 * 119.99902 * 180.02562 * 7 6 4 27 27 H 1.08999 * 108.97408 * 115.21652 * 15 14 12 28 28 H 1.09005 * 108.90762 * 356.47959 * 15 14 12 29 29 H 1.08994 * 108.78819 * 197.34033 * 16 15 14 30 30 H 1.09004 * 108.78456 * 79.13087 * 16 15 14 31 31 H 0.96703 * 113.99880 * 34.42571 * 18 17 16 32 32 H 1.09007 * 117.53629 * 217.64727 * 19 17 16 33 33 H 1.08993 * 117.54560 * 2.91517 * 19 17 16 34 34 H 1.09003 * 109.21307 * 260.83510 * 22 14 12 35 35 H 1.09001 * 109.21318 * 20.20360 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 -1.2306 5 1 2.5809 -1.6355 -1.1338 6 6 1.7916 -0.1789 -2.4799 7 7 1.2162 0.9982 -2.5941 8 14 2.2825 -1.1309 -4.0102 9 1 1.1174 -1.9070 -4.5054 10 1 2.7282 -0.1819 -5.0618 11 1 3.3924 -2.0606 -3.6799 12 6 2.0324 -0.7104 1.2304 13 8 2.6349 -1.7574 1.1225 14 7 1.8120 -0.1824 2.4506 15 6 1.1522 1.1087 2.5467 16 6 1.9786 2.1128 3.3278 17 6 2.6238 1.5155 4.5589 18 8 3.6586 2.3187 5.1299 19 6 1.7994 0.7331 5.5698 20 6 2.8252 0.0138 4.6774 21 1 3.7388 -0.3323 5.1605 22 6 2.2430 -0.9258 3.6253 23 1 -0.3633 0.4234 0.9364 24 1 -0.3634 0.5992 -0.8348 25 1 -0.3633 -1.0226 -0.1015 26 1 1.0464 1.3718 -3.4730 27 1 0.1903 0.9791 3.0428 28 1 0.9829 1.4946 1.5414 29 1 1.3333 2.9361 3.6341 30 1 2.7603 2.5057 2.6775 31 1 3.5038 3.2704 5.0560 32 1 2.0468 0.8553 6.6244 33 1 0.7433 0.5797 5.3483 34 1 1.3886 -1.4536 4.0491 35 1 3.0029 -1.6503 3.3324 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118788934.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:35 Heat of formation + Delta-G solvation = -56.011848 kcal Electronic energy + Delta-G solvation = -17782.474432 eV Core-core repulsion = 14974.417134 eV Total energy + Delta-G solvation = -2808.057298 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.32306 -38.32613 -35.46584 -34.06461 -33.27116 -31.25413 -30.44857 -26.51237 -25.20547 -24.02023 -22.47551 -21.56718 -19.61797 -18.31315 -17.03173 -16.45218 -15.81884 -15.52650 -14.90039 -14.58628 -14.41085 -13.89134 -13.67225 -13.33066 -13.03790 -12.58041 -12.26992 -11.99909 -11.53905 -11.47236 -11.24462 -10.98328 -10.88019 -10.79086 -10.58278 -10.32423 -10.05797 -9.89054 -9.28228 -8.99867 -8.54763 -8.35754 -8.12577 -6.06467 -4.05980 3.33554 3.39625 3.41922 3.48916 3.63319 3.77214 4.00020 4.46959 4.61396 4.72271 4.84317 5.13733 5.26714 5.29664 5.45221 5.65226 5.66420 5.77596 5.87709 5.94554 6.02162 6.10625 6.16680 6.29057 6.55989 6.76004 6.85827 7.15822 7.39567 7.52132 7.64088 7.95287 8.00724 8.36362 9.02979 9.18084 9.58823 11.04076 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.041482 B = 0.006348 C = 0.006091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.837085 B = 4409.822640 C = 4595.516535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.029 3.971 3 H 0.057 0.943 4 C -0.502 4.502 5 H 0.074 0.926 6 C 0.060 3.940 7 N -0.897 5.897 8 Si 0.898 3.102 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.272 1.272 12 C 0.518 3.482 13 O -0.542 6.542 14 N -0.621 5.621 15 C 0.112 3.888 16 C -0.126 4.126 17 C 0.082 3.918 18 O -0.538 6.538 19 C -0.201 4.201 20 C -0.144 4.144 21 H 0.114 0.886 22 C 0.143 3.857 23 H 0.021 0.979 24 H 0.078 0.922 25 H 0.036 0.964 26 H 0.261 0.739 27 H 0.058 0.942 28 H 0.112 0.888 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.379 0.621 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.062 0.938 35 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.839 4.506 13.544 14.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.008 3.992 3 H 0.074 0.926 4 C -0.540 4.540 5 H 0.092 0.908 6 C -0.141 4.141 7 N -0.536 5.536 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.197 1.197 12 C 0.310 3.690 13 O -0.417 6.417 14 N -0.356 5.356 15 C -0.012 4.012 16 C -0.165 4.165 17 C 0.041 3.959 18 O -0.343 6.343 19 C -0.238 4.238 20 C -0.163 4.163 21 H 0.132 0.868 22 C 0.019 3.981 23 H 0.040 0.960 24 H 0.097 0.903 25 H 0.055 0.945 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.130 0.870 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.227 0.773 32 H 0.117 0.883 33 H 0.117 0.883 34 H 0.080 0.920 35 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.313 3.467 13.476 13.977 hybrid contribution 0.020 0.240 -0.746 0.784 sum -1.294 3.706 12.730 13.322 Atomic orbital electron populations 1.21835 0.96674 1.00799 0.99775 1.18868 0.93853 0.97081 0.89398 0.92555 1.21140 1.34947 1.08812 0.89124 0.90791 1.24939 0.95222 0.94825 0.99107 1.69928 1.43733 1.16184 1.23796 0.86463 0.78915 0.79769 0.82264 1.20692 1.21312 1.19677 1.22123 0.77166 0.85363 0.84363 1.90519 1.40708 1.24307 1.86153 1.47506 1.61496 1.20383 1.06253 1.21089 0.94091 0.83237 1.02762 1.21282 1.00810 0.99212 0.95157 1.20749 0.91681 0.89577 0.93919 1.86503 1.45626 1.21182 1.81015 1.23772 0.97313 1.05480 0.97257 1.22799 1.00582 0.92515 1.00398 0.86843 1.20581 0.99409 0.93334 0.84740 0.95976 0.90336 0.94485 0.92977 0.92411 0.87031 0.90078 0.90063 0.77302 0.88332 0.88319 0.92042 0.88918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 8.49 37.16 0.32 -2.64 16 2 C 0.03 0.71 1.65 -92.93 -0.15 0.56 16 3 H 0.06 1.43 7.14 -51.93 -0.37 1.06 16 4 C -0.50 -14.24 8.30 -34.44 -0.29 -14.53 16 5 H 0.07 2.23 6.78 -52.49 -0.36 1.88 16 6 C 0.06 1.66 5.29 -17.82 -0.09 1.57 16 7 N -0.90 -25.03 11.99 55.43 0.66 -24.36 16 8 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 9 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 11 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 12 C 0.52 12.01 6.94 -10.99 -0.08 11.93 16 13 O -0.54 -14.33 14.78 5.56 0.08 -14.25 16 14 N -0.62 -11.30 3.01 -176.42 -0.53 -11.84 16 15 C 0.11 1.67 4.57 -5.34 -0.02 1.64 16 16 C -0.13 -1.56 5.76 -28.26 -0.16 -1.72 16 17 C 0.08 1.06 3.21 -92.46 -0.30 0.76 16 18 O -0.54 -6.70 13.66 -35.23 -0.48 -7.19 16 19 C -0.20 -2.32 9.63 -26.76 -0.26 -2.57 16 20 C -0.14 -2.00 6.22 -90.92 -0.57 -2.57 16 21 H 0.11 1.56 8.14 -51.93 -0.42 1.13 16 22 C 0.14 2.29 6.24 -4.76 -0.03 2.26 16 23 H 0.02 0.40 5.72 -51.93 -0.30 0.10 16 24 H 0.08 1.88 6.86 -51.93 -0.36 1.53 16 25 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 27 H 0.06 0.75 8.11 -51.93 -0.42 0.33 16 28 H 0.11 1.82 4.45 -51.93 -0.23 1.59 16 29 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.38 3.01 8.93 45.56 0.41 3.41 16 32 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.10 1.07 8.12 -51.93 -0.42 0.64 16 34 H 0.06 0.89 8.12 -51.93 -0.42 0.47 16 35 H 0.09 1.65 6.98 -51.93 -0.36 1.29 16 LS Contribution 280.81 15.07 4.23 4.23 Total: -1.00 -32.12 280.81 -6.77 -38.88 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -4.08 Total: 3.03 kcal Atomic # 6 Polarization: -3.68 SS G_CDS: -1.63 Total: -5.31 kcal Atomic # 7 Polarization: -36.33 SS G_CDS: 0.13 Total: -36.20 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: -0.40 Total: -21.43 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -32.12 -6.77 -38.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118788934.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.129 kcal (2) G-P(sol) polarization free energy of solvation -32.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds