Wall clock time and date at job start Sun Mar 29 2020 22:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46846 * 2 1 4 4 C 1.50700 * 109.47054 * 240.00853 * 2 1 3 5 5 H 1.08002 * 119.99375 * 245.28994 * 4 2 1 6 6 C 1.37874 * 120.00579 * 65.28995 * 4 2 1 7 7 N 1.31520 * 119.99722 * 5.31153 * 6 4 2 8 8 Si 1.86792 * 120.00330 * 185.31538 * 6 4 2 9 9 H 1.48498 * 109.47565 * 94.99534 * 8 6 4 10 10 H 1.48499 * 109.47270 * 214.99667 * 8 6 4 11 11 H 1.48501 * 109.47051 * 334.99136 * 8 6 4 12 12 C 1.50695 * 109.47306 * 120.00179 * 2 1 3 13 13 O 1.21282 * 119.99739 * 113.85288 * 12 2 1 14 14 N 1.34773 * 120.00418 * 293.85405 * 12 2 1 15 15 C 1.45318 * 118.82801 * 356.66260 * 14 12 2 16 16 C 1.51701 * 112.00809 * 235.86880 * 15 14 12 17 17 C 1.51279 * 112.95414 * 318.23866 * 16 15 14 18 18 O 1.42896 * 114.33609 * 165.31116 * 17 16 15 19 19 C 1.52111 * 120.85160 * 308.62932 * 17 16 15 20 20 C 1.51976 * 120.67350 * 20.75196 * 17 16 15 21 21 H 1.08994 * 117.35249 * 142.88081 * 20 17 16 22 22 C 1.45535 * 118.83267 * 176.64101 * 14 12 2 23 23 H 1.09003 * 109.47112 * 294.32802 * 1 2 3 24 24 H 1.09000 * 109.47547 * 54.32956 * 1 2 3 25 25 H 1.08999 * 109.46830 * 174.33122 * 1 2 3 26 26 H 0.97000 * 119.99902 * 180.02562 * 7 6 4 27 27 H 1.08999 * 108.97408 * 115.21652 * 15 14 12 28 28 H 1.09005 * 108.90762 * 356.47959 * 15 14 12 29 29 H 1.08994 * 108.78819 * 197.34033 * 16 15 14 30 30 H 1.09004 * 108.78456 * 79.13087 * 16 15 14 31 31 H 0.96703 * 113.99880 * 34.42571 * 18 17 16 32 32 H 1.09007 * 117.53629 * 217.64727 * 19 17 16 33 33 H 1.08993 * 117.54560 * 2.91517 * 19 17 16 34 34 H 1.09003 * 109.21307 * 260.83510 * 22 14 12 35 35 H 1.09001 * 109.21318 * 20.20360 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 -1.2306 5 1 2.5809 -1.6355 -1.1338 6 6 1.7916 -0.1789 -2.4799 7 7 1.2162 0.9982 -2.5941 8 14 2.2825 -1.1309 -4.0102 9 1 1.1174 -1.9070 -4.5054 10 1 2.7282 -0.1819 -5.0618 11 1 3.3924 -2.0606 -3.6799 12 6 2.0324 -0.7104 1.2304 13 8 2.6349 -1.7574 1.1225 14 7 1.8120 -0.1824 2.4506 15 6 1.1522 1.1087 2.5467 16 6 1.9786 2.1128 3.3278 17 6 2.6238 1.5155 4.5589 18 8 3.6586 2.3187 5.1299 19 6 1.7994 0.7331 5.5698 20 6 2.8252 0.0138 4.6774 21 1 3.7388 -0.3323 5.1605 22 6 2.2430 -0.9258 3.6253 23 1 -0.3633 0.4234 0.9364 24 1 -0.3634 0.5992 -0.8348 25 1 -0.3633 -1.0226 -0.1015 26 1 1.0464 1.3718 -3.4730 27 1 0.1903 0.9791 3.0428 28 1 0.9829 1.4946 1.5414 29 1 1.3333 2.9361 3.6341 30 1 2.7603 2.5057 2.6775 31 1 3.5038 3.2704 5.0560 32 1 2.0468 0.8553 6.6244 33 1 0.7433 0.5797 5.3483 34 1 1.3886 -1.4536 4.0491 35 1 3.0029 -1.6503 3.3324 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118788934.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:35 Heat of formation + Delta-G solvation = -79.430529 kcal Electronic energy + Delta-G solvation = -17783.489942 eV Core-core repulsion = 14974.417134 eV Total energy + Delta-G solvation = -2809.072808 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.65819 -39.75944 -36.77304 -35.91624 -34.65032 -32.67590 -32.14613 -27.86993 -27.21137 -25.29841 -24.15191 -22.59279 -21.13583 -19.49974 -18.52962 -18.24106 -17.30536 -17.07141 -16.41818 -16.27651 -15.63293 -15.08422 -14.98322 -14.76444 -14.65496 -14.00091 -13.82953 -13.54742 -12.98026 -12.93050 -12.80289 -12.49304 -12.48691 -12.29680 -12.23408 -12.00957 -11.99782 -11.06563 -11.03299 -10.56801 -10.28578 -10.23063 -9.59912 -8.19157 -6.25304 1.39497 1.40713 1.52661 1.84587 2.11223 2.44907 2.70117 3.04581 3.13539 3.60219 3.66922 3.81333 3.94459 4.13918 4.32415 4.39657 4.63774 4.70646 4.73084 4.76913 4.84009 4.88966 4.93358 4.97709 5.04026 5.13250 5.14521 5.45353 5.70588 5.73447 5.88153 6.14941 6.54433 6.80712 6.82733 7.37700 7.46903 8.90022 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.041482 B = 0.006348 C = 0.006091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.837085 B = 4409.822640 C = 4595.516535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.029 3.971 3 H 0.047 0.953 4 C -0.532 4.532 5 H 0.045 0.955 6 C 0.024 3.976 7 N -0.910 5.910 8 Si 0.952 3.048 9 H -0.272 1.272 10 H -0.274 1.274 11 H -0.282 1.282 12 C 0.514 3.486 13 O -0.588 6.588 14 N -0.610 5.610 15 C 0.102 3.898 16 C -0.120 4.120 17 C 0.079 3.921 18 O -0.552 6.552 19 C -0.170 4.170 20 C -0.171 4.171 21 H 0.109 0.891 22 C 0.143 3.857 23 H 0.063 0.937 24 H 0.060 0.940 25 H 0.024 0.976 26 H 0.266 0.734 27 H 0.090 0.910 28 H 0.096 0.904 29 H 0.122 0.878 30 H 0.066 0.934 31 H 0.399 0.601 32 H 0.111 0.889 33 H 0.114 0.886 34 H 0.081 0.919 35 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.047 5.874 14.926 16.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.008 3.992 3 H 0.064 0.936 4 C -0.571 4.571 5 H 0.063 0.937 6 C -0.176 4.176 7 N -0.549 5.549 8 Si 0.778 3.222 9 H -0.197 1.197 10 H -0.199 1.199 11 H -0.207 1.207 12 C 0.305 3.695 13 O -0.468 6.468 14 N -0.344 5.344 15 C -0.021 4.021 16 C -0.158 4.158 17 C 0.038 3.962 18 O -0.360 6.360 19 C -0.207 4.207 20 C -0.190 4.190 21 H 0.127 0.873 22 C 0.021 3.979 23 H 0.082 0.918 24 H 0.079 0.921 25 H 0.043 0.957 26 H 0.075 0.925 27 H 0.108 0.892 28 H 0.114 0.886 29 H 0.140 0.860 30 H 0.085 0.915 31 H 0.250 0.750 32 H 0.130 0.870 33 H 0.132 0.868 34 H 0.099 0.901 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.546 4.897 14.897 15.886 hybrid contribution 0.419 -0.131 -1.112 1.196 sum -2.127 4.765 13.784 14.739 Atomic orbital electron populations 1.21650 0.94815 0.99919 1.01192 1.18762 0.95277 0.96030 0.89173 0.93555 1.21282 1.35851 1.08498 0.91450 0.93718 1.25542 0.95122 0.95643 1.01277 1.69979 1.43663 1.16644 1.24625 0.85639 0.78508 0.78711 0.79386 1.19697 1.19942 1.20693 1.21849 0.77061 0.84848 0.85719 1.90491 1.42938 1.26267 1.87076 1.47451 1.60273 1.21365 1.05263 1.21362 0.95804 0.81985 1.02921 1.21247 1.00774 0.99339 0.94439 1.20783 0.92026 0.88741 0.94665 1.86465 1.45815 1.22912 1.80850 1.23806 0.97279 1.02233 0.97372 1.22710 1.01826 0.93408 1.01034 0.87279 1.20655 0.99508 0.93445 0.84325 0.91843 0.92142 0.95726 0.92511 0.89160 0.88598 0.86006 0.91492 0.75016 0.87027 0.86801 0.90096 0.91733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.21 8.49 71.98 0.61 -4.59 16 2 C 0.03 1.44 1.65 -12.29 -0.02 1.42 16 3 H 0.05 2.40 7.14 -2.39 -0.02 2.38 16 4 C -0.53 -31.18 8.30 25.60 0.21 -30.97 16 5 H 0.04 2.83 6.78 -2.91 -0.02 2.81 16 6 C 0.02 1.33 5.29 84.65 0.45 1.78 16 7 N -0.91 -50.79 11.99 21.45 0.26 -50.54 16 8 Si 0.95 45.14 29.54 68.60 2.03 47.16 16 9 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 10 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 11 H -0.28 -13.70 7.11 99.48 0.71 -12.99 16 12 C 0.51 24.35 6.94 87.66 0.61 24.96 16 13 O -0.59 -32.54 14.78 -3.04 -0.04 -32.58 16 14 N -0.61 -21.76 3.01 -830.45 -2.50 -24.26 16 15 C 0.10 2.76 4.57 86.17 0.39 3.15 16 16 C -0.12 -2.58 5.76 29.61 0.17 -2.41 16 17 C 0.08 1.80 3.21 -11.99 -0.04 1.76 16 18 O -0.55 -12.21 13.66 -148.98 -2.04 -14.24 16 19 C -0.17 -3.24 9.63 30.58 0.29 -2.95 16 20 C -0.17 -4.45 6.22 -10.99 -0.07 -4.52 16 21 H 0.11 2.92 8.14 -2.39 -0.02 2.90 16 22 C 0.14 4.50 6.24 86.43 0.54 5.04 16 23 H 0.06 2.21 5.72 -2.39 -0.01 2.20 16 24 H 0.06 2.88 6.86 -2.39 -0.02 2.86 16 25 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.27 14.00 8.31 -92.71 -0.77 13.23 16 27 H 0.09 1.92 8.11 -2.39 -0.02 1.91 16 28 H 0.10 2.95 4.45 -2.38 -0.01 2.94 16 29 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 31 H 0.40 5.03 8.93 -74.06 -0.66 4.37 16 32 H 0.11 1.90 8.14 -2.38 -0.02 1.88 16 33 H 0.11 1.87 8.12 -2.39 -0.02 1.85 16 34 H 0.08 2.22 8.12 -2.39 -0.02 2.20 16 35 H 0.06 2.39 6.98 -2.39 -0.02 2.37 16 Total: -1.00 -71.17 280.81 1.29 -69.88 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: 0.44 Total: 11.91 kcal Atomic # 6 Polarization: -10.49 SS G_CDS: 3.15 Total: -7.34 kcal Atomic # 7 Polarization: -72.55 SS G_CDS: -2.24 Total: -74.79 kcal Atomic # 8 Polarization: -44.74 SS G_CDS: -2.08 Total: -46.82 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.16 kcal Total: -71.17 1.29 -69.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118788934.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.553 kcal (2) G-P(sol) polarization free energy of solvation -71.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds