Wall clock time and date at job start Sun Mar 29 2020 22:44:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47213 * 2 1 4 4 N 1.46498 * 109.47104 * 179.97438 * 3 2 1 5 5 N 1.40581 * 127.38148 * 275.63393 * 4 3 2 6 6 N 1.28913 * 106.81367 * 179.97438 * 5 4 3 7 7 N 1.28423 * 110.31850 * 359.72182 * 6 5 4 8 8 C 1.31474 * 110.50483 * 0.46229 * 7 6 5 9 9 N 1.38382 * 126.43808 * 179.81782 * 8 7 6 10 10 C 1.46896 * 110.99707 * 290.16892 * 9 8 7 11 11 C 1.46895 * 110.99952 * 54.11983 * 9 8 7 12 12 H 1.08999 * 109.47658 * 300.00327 * 11 9 8 13 13 C 1.53006 * 109.46757 * 60.00493 * 11 9 8 14 14 C 1.50702 * 109.46991 * 179.97438 * 11 9 8 15 15 H 1.07994 * 120.00132 * 0.02562 * 14 11 9 16 16 C 1.37874 * 120.00146 * 180.02562 * 14 11 9 17 17 N 1.31511 * 120.00165 * 180.02562 * 16 14 11 18 18 Si 1.86812 * 119.99916 * 0.02562 * 16 14 11 19 19 H 1.48502 * 109.46884 * 89.99729 * 18 16 14 20 20 H 1.48496 * 109.47036 * 209.99672 * 18 16 14 21 21 H 1.48495 * 109.46752 * 329.99722 * 18 16 14 22 22 H 1.08998 * 109.47021 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47293 * 299.99821 * 1 2 3 24 24 H 1.09001 * 109.47422 * 59.99825 * 1 2 3 25 25 H 1.09000 * 109.46788 * 240.00178 * 2 1 3 26 26 H 1.08998 * 109.46932 * 120.00205 * 2 1 3 27 27 H 1.09003 * 109.46845 * 59.99904 * 3 2 1 28 28 H 1.09001 * 109.47070 * 300.00390 * 3 2 1 29 29 H 1.09003 * 109.47174 * 189.75120 * 10 9 8 30 30 H 1.09000 * 109.47813 * 309.75396 * 10 9 8 31 31 H 1.09008 * 109.47550 * 69.75517 * 10 9 8 32 32 H 1.09002 * 109.46654 * 179.97438 * 13 11 9 33 33 H 1.08997 * 109.47087 * 299.99031 * 13 11 9 34 34 H 1.08999 * 109.46934 * 60.00033 * 13 11 9 35 35 H 0.96999 * 119.99963 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 7 4.3580 1.3329 1.1127 6 7 5.5652 1.3767 0.6624 7 7 5.5601 1.4965 -0.6162 8 6 4.3269 1.5472 -1.0692 9 7 3.9418 1.6771 -2.3919 10 6 4.2567 3.0180 -2.9025 11 6 4.5611 0.6378 -3.2250 12 1 5.6462 0.7240 -3.1668 13 6 4.1314 -0.7420 -2.7223 14 6 4.1190 0.8108 -4.6553 15 1 3.4456 1.6129 -4.9191 16 6 4.5740 -0.0549 -5.6271 17 7 4.1886 0.0964 -6.8753 18 14 5.7382 -1.4428 -5.1708 19 1 4.9521 -2.6510 -4.8137 20 1 6.6198 -1.7493 -6.3258 21 1 6.5681 -1.0312 -4.0102 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.6766 1.9563 0.8900 28 1 1.6766 1.9563 -0.8900 29 1 3.7928 3.1530 -3.8796 30 1 3.8738 3.7692 -2.2117 31 1 5.3374 3.1271 -2.9953 32 1 4.5906 -1.5132 -3.3408 33 1 4.4509 -0.8674 -1.6878 34 1 3.0464 -0.8281 -2.7806 35 1 4.5085 -0.5128 -7.5590 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119643201.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:11 Heat of formation + Delta-G solvation = 128.953808 kcal Electronic energy + Delta-G solvation = -17952.488874 eV Core-core repulsion = 15217.037791 eV Total energy + Delta-G solvation = -2735.451083 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.144 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.61721 -37.66875 -36.06423 -33.12719 -32.51732 -31.06933 -30.23821 -27.26947 -25.83032 -24.70809 -23.09820 -22.36095 -21.42741 -19.91435 -17.31595 -16.72608 -16.36944 -15.63199 -15.27890 -15.04584 -14.12190 -13.67276 -13.59815 -13.31183 -12.77353 -12.67879 -12.38165 -12.23772 -12.00386 -11.83144 -11.63989 -11.31118 -10.96458 -10.86776 -10.82882 -10.62605 -10.33540 -10.11380 -9.74385 -9.63351 -9.38111 -8.73899 -8.24102 -6.24021 -4.26121 1.31434 2.05042 2.64567 3.17586 3.31200 3.33476 4.05050 4.26626 4.48847 4.71045 4.95765 5.04656 5.07869 5.14874 5.34555 5.52835 5.59618 5.66708 5.80900 5.89160 6.00054 6.03799 6.07685 6.08132 6.17762 6.24479 6.45531 6.48742 6.64428 6.90271 7.21776 7.39702 7.66869 8.35656 8.77359 8.85286 9.35243 10.87469 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.023696 B = 0.008739 C = 0.007836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.337657 B = 3203.270810 C = 3572.547559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.141 4.141 3 C 0.130 3.870 4 N -0.371 5.371 5 N -0.102 5.102 6 N -0.045 5.045 7 N -0.358 5.358 8 C 0.436 3.564 9 N -0.462 5.462 10 C 0.047 3.953 11 C 0.194 3.806 12 H 0.027 0.973 13 C -0.149 4.149 14 C -0.516 4.516 15 H 0.089 0.911 16 C 0.080 3.920 17 N -0.890 5.890 18 Si 0.877 3.123 19 H -0.277 1.277 20 H -0.292 1.292 21 H -0.264 1.264 22 H 0.062 0.938 23 H 0.056 0.944 24 H 0.063 0.937 25 H 0.079 0.921 26 H 0.069 0.931 27 H 0.096 0.904 28 H 0.112 0.888 29 H 0.102 0.898 30 H 0.049 0.951 31 H 0.043 0.957 32 H 0.053 0.947 33 H 0.021 0.979 34 H 0.062 0.938 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.392 1.951 10.791 12.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.180 4.180 3 C 0.008 3.992 4 N -0.169 5.169 5 N -0.089 5.089 6 N -0.042 5.042 7 N -0.215 5.215 8 C 0.070 3.930 9 N -0.191 5.191 10 C -0.100 4.100 11 C 0.088 3.912 12 H 0.044 0.956 13 C -0.206 4.206 14 C -0.554 4.554 15 H 0.106 0.894 16 C -0.124 4.124 17 N -0.527 5.527 18 Si 0.707 3.293 19 H -0.204 1.204 20 H -0.219 1.219 21 H -0.189 1.189 22 H 0.081 0.919 23 H 0.075 0.925 24 H 0.082 0.918 25 H 0.098 0.902 26 H 0.087 0.913 27 H 0.114 0.886 28 H 0.130 0.870 29 H 0.120 0.880 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.040 0.960 34 H 0.081 0.919 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.937 1.733 11.584 13.132 hybrid contribution 0.494 -0.814 -0.358 1.017 sum -5.443 0.919 11.226 12.510 Atomic orbital electron populations 1.21661 0.93919 1.02556 1.02234 1.21926 0.97045 0.95176 1.03861 1.22032 0.72335 0.99598 1.05225 1.51659 1.09334 1.50771 1.05153 1.82437 0.95476 1.23626 1.07344 1.77865 1.12846 1.09816 1.03634 1.74996 1.18862 1.24347 1.03270 1.23583 0.84855 0.93327 0.91200 1.59386 1.58505 1.07310 0.93864 1.22328 1.00840 0.85304 1.01522 1.19934 0.93718 0.85258 0.92283 0.95564 1.22245 1.01990 0.98774 0.97607 1.20779 1.30329 1.16422 0.87870 0.89360 1.24807 0.95585 0.97195 0.94773 1.69838 1.44132 1.37978 1.00729 0.87002 0.81470 0.82912 0.77941 1.20369 1.21931 1.18854 0.91924 0.92529 0.91803 0.90222 0.91272 0.88578 0.86980 0.87990 0.93213 0.93819 0.92875 0.96019 0.91870 0.92233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.91 37.16 0.37 -0.91 16 2 C -0.14 -1.62 6.26 -26.73 -0.17 -1.79 16 3 C 0.13 1.57 6.51 -4.04 -0.03 1.55 16 4 N -0.37 -6.12 3.69 -61.86 -0.23 -6.35 16 5 N -0.10 -1.84 13.93 60.35 0.84 -1.00 16 6 N -0.05 -0.91 13.38 60.35 0.81 -0.10 16 7 N -0.36 -7.50 11.96 30.10 0.36 -7.14 16 8 C 0.44 8.33 5.12 -320.41 -1.64 6.69 16 9 N -0.46 -9.04 4.60 -176.42 -0.81 -9.86 16 10 C 0.05 0.83 9.10 60.06 0.55 1.38 16 11 C 0.19 4.42 1.54 -68.86 -0.11 4.31 16 12 H 0.03 0.66 7.07 -51.93 -0.37 0.29 16 13 C -0.15 -3.22 8.54 37.16 0.32 -2.90 16 14 C -0.52 -13.26 8.56 -34.44 -0.29 -13.56 16 15 H 0.09 2.39 6.66 -52.49 -0.35 2.04 16 16 C 0.08 2.16 5.45 -17.82 -0.10 2.07 16 17 N -0.89 -25.48 13.96 55.43 0.77 -24.71 16 18 Si 0.88 21.12 24.37 -169.99 -4.14 16.98 16 19 H -0.28 -6.49 6.87 56.52 0.39 -6.10 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.26 -6.33 6.53 56.52 0.37 -5.96 16 22 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 23 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.08 1.10 7.53 -51.93 -0.39 0.70 16 26 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 28 H 0.11 1.29 8.09 -51.93 -0.42 0.87 16 29 H 0.10 1.84 6.46 -51.93 -0.34 1.50 16 30 H 0.05 0.74 8.06 -51.93 -0.42 0.32 16 31 H 0.04 0.80 8.12 -51.92 -0.42 0.38 16 32 H 0.05 1.20 3.27 -51.93 -0.17 1.03 16 33 H 0.02 0.44 7.22 -51.93 -0.38 0.07 16 34 H 0.06 1.29 7.53 -51.93 -0.39 0.90 16 35 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 286.43 15.07 4.32 4.32 Total: -1.00 -29.48 286.43 -4.12 -33.60 By element: Atomic # 1 Polarization: 2.36 SS G_CDS: -4.93 Total: -2.57 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: -1.10 Total: -3.17 kcal Atomic # 7 Polarization: -50.89 SS G_CDS: 1.74 Total: -49.15 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.14 Total: 16.98 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -29.48 -4.12 -33.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119643201.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.551 kcal (2) G-P(sol) polarization free energy of solvation -29.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds