Wall clock time and date at job start Sun Mar 29 2020 22:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47213 * 2 1 4 4 N 1.46498 * 109.47104 * 179.97438 * 3 2 1 5 5 N 1.40581 * 127.38148 * 275.63393 * 4 3 2 6 6 N 1.28913 * 106.81367 * 179.97438 * 5 4 3 7 7 N 1.28423 * 110.31850 * 359.72182 * 6 5 4 8 8 C 1.31474 * 110.50483 * 0.46229 * 7 6 5 9 9 N 1.38382 * 126.43808 * 179.81782 * 8 7 6 10 10 C 1.46896 * 110.99707 * 290.16892 * 9 8 7 11 11 C 1.46895 * 110.99952 * 54.11983 * 9 8 7 12 12 H 1.08999 * 109.47658 * 300.00327 * 11 9 8 13 13 C 1.53006 * 109.46757 * 60.00493 * 11 9 8 14 14 C 1.50702 * 109.46991 * 179.97438 * 11 9 8 15 15 H 1.07994 * 120.00132 * 0.02562 * 14 11 9 16 16 C 1.37874 * 120.00146 * 180.02562 * 14 11 9 17 17 N 1.31511 * 120.00165 * 180.02562 * 16 14 11 18 18 Si 1.86812 * 119.99916 * 0.02562 * 16 14 11 19 19 H 1.48502 * 109.46884 * 89.99729 * 18 16 14 20 20 H 1.48496 * 109.47036 * 209.99672 * 18 16 14 21 21 H 1.48495 * 109.46752 * 329.99722 * 18 16 14 22 22 H 1.08998 * 109.47021 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47293 * 299.99821 * 1 2 3 24 24 H 1.09001 * 109.47422 * 59.99825 * 1 2 3 25 25 H 1.09000 * 109.46788 * 240.00178 * 2 1 3 26 26 H 1.08998 * 109.46932 * 120.00205 * 2 1 3 27 27 H 1.09003 * 109.46845 * 59.99904 * 3 2 1 28 28 H 1.09001 * 109.47070 * 300.00390 * 3 2 1 29 29 H 1.09003 * 109.47174 * 189.75120 * 10 9 8 30 30 H 1.09000 * 109.47813 * 309.75396 * 10 9 8 31 31 H 1.09008 * 109.47550 * 69.75517 * 10 9 8 32 32 H 1.09002 * 109.46654 * 179.97438 * 13 11 9 33 33 H 1.08997 * 109.47087 * 299.99031 * 13 11 9 34 34 H 1.08999 * 109.46934 * 60.00033 * 13 11 9 35 35 H 0.96999 * 119.99963 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 7 4.3580 1.3329 1.1127 6 7 5.5652 1.3767 0.6624 7 7 5.5601 1.4965 -0.6162 8 6 4.3269 1.5472 -1.0692 9 7 3.9418 1.6771 -2.3919 10 6 4.2567 3.0180 -2.9025 11 6 4.5611 0.6378 -3.2250 12 1 5.6462 0.7240 -3.1668 13 6 4.1314 -0.7420 -2.7223 14 6 4.1190 0.8108 -4.6553 15 1 3.4456 1.6129 -4.9191 16 6 4.5740 -0.0549 -5.6271 17 7 4.1886 0.0964 -6.8753 18 14 5.7382 -1.4428 -5.1708 19 1 4.9521 -2.6510 -4.8137 20 1 6.6198 -1.7493 -6.3258 21 1 6.5681 -1.0312 -4.0102 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.6766 1.9563 0.8900 28 1 1.6766 1.9563 -0.8900 29 1 3.7928 3.1530 -3.8796 30 1 3.8738 3.7692 -2.2117 31 1 5.3374 3.1271 -2.9953 32 1 4.5906 -1.5132 -3.3408 33 1 4.4509 -0.8674 -1.6878 34 1 3.0464 -0.8281 -2.7806 35 1 4.5085 -0.5128 -7.5590 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119643201.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:10 Heat of formation + Delta-G solvation = 108.778938 kcal Electronic energy + Delta-G solvation = -17953.363722 eV Core-core repulsion = 15217.037791 eV Total energy + Delta-G solvation = -2736.325931 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.144 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -44.08606 -39.30269 -37.19165 -35.01372 -33.69923 -32.78806 -31.86332 -28.43149 -27.50782 -26.36723 -24.41412 -23.92048 -22.51359 -21.56549 -19.03733 -18.24404 -17.92957 -17.21428 -16.82030 -16.25932 -15.78036 -15.28647 -14.87472 -14.63980 -14.39342 -14.17884 -13.85933 -13.72932 -13.25811 -12.98448 -12.89719 -12.77296 -12.60029 -12.50937 -12.19912 -12.13302 -11.73807 -11.57434 -11.39635 -11.33154 -11.13220 -10.78998 -9.90105 -8.33218 -6.37290 -0.12586 0.72573 1.12422 1.25611 1.35725 1.41877 2.26609 2.56546 3.00899 3.27533 3.60611 3.79839 4.06041 4.11564 4.21274 4.31063 4.35931 4.38866 4.46522 4.48233 4.63685 4.69143 4.77344 4.80918 5.03173 5.04356 5.11537 5.15440 5.21927 5.39406 5.40975 5.63999 5.93993 6.37235 6.68496 7.26632 7.37430 8.81177 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.023696 B = 0.008739 C = 0.007836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.337657 B = 3203.270810 C = 3572.547559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.137 4.137 3 C 0.118 3.882 4 N -0.354 5.354 5 N -0.092 5.092 6 N -0.063 5.063 7 N -0.384 5.384 8 C 0.427 3.573 9 N -0.456 5.456 10 C 0.047 3.953 11 C 0.200 3.800 12 H 0.006 0.994 13 C -0.140 4.140 14 C -0.506 4.506 15 H 0.069 0.931 16 C 0.035 3.965 17 N -0.930 5.930 18 Si 0.924 3.076 19 H -0.264 1.264 20 H -0.293 1.293 21 H -0.264 1.264 22 H 0.065 0.935 23 H 0.076 0.924 24 H 0.065 0.935 25 H 0.054 0.946 26 H 0.066 0.934 27 H 0.129 0.871 28 H 0.121 0.879 29 H 0.094 0.906 30 H 0.081 0.919 31 H 0.032 0.968 32 H 0.044 0.956 33 H 0.027 0.973 34 H 0.073 0.927 35 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.494 1.844 12.432 14.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.175 4.175 3 C -0.002 4.002 4 N -0.153 5.153 5 N -0.079 5.079 6 N -0.059 5.059 7 N -0.241 5.241 8 C 0.060 3.940 9 N -0.183 5.183 10 C -0.099 4.099 11 C 0.093 3.907 12 H 0.023 0.977 13 C -0.198 4.198 14 C -0.544 4.544 15 H 0.087 0.913 16 C -0.165 4.165 17 N -0.569 5.569 18 Si 0.752 3.248 19 H -0.190 1.190 20 H -0.220 1.220 21 H -0.189 1.189 22 H 0.084 0.916 23 H 0.095 0.905 24 H 0.084 0.916 25 H 0.073 0.927 26 H 0.085 0.915 27 H 0.147 0.853 28 H 0.139 0.861 29 H 0.113 0.887 30 H 0.099 0.901 31 H 0.051 0.949 32 H 0.063 0.937 33 H 0.046 0.954 34 H 0.092 0.908 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.064 1.630 13.251 15.104 hybrid contribution 0.743 -0.697 -0.797 1.294 sum -6.320 0.933 12.454 13.997 Atomic orbital electron populations 1.21638 0.91588 1.03210 1.03340 1.21889 0.98934 0.94251 1.02463 1.22556 0.69676 1.00600 1.07324 1.51920 1.10583 1.48900 1.03852 1.82357 0.95259 1.22558 1.07726 1.77857 1.13642 1.11061 1.03330 1.74911 1.20261 1.25073 1.03874 1.23375 0.84994 0.94437 0.91180 1.59293 1.57805 1.07270 0.93953 1.22366 1.00245 0.85262 1.02053 1.19652 0.92550 0.87053 0.91411 0.97655 1.22117 1.02545 0.97511 0.97620 1.20928 1.28926 1.15175 0.89408 0.91287 1.25411 0.97018 0.99348 0.94716 1.69937 1.45945 1.39330 1.01715 0.86234 0.79979 0.81123 0.77461 1.18985 1.22008 1.18924 0.91560 0.90489 0.91630 0.92742 0.91529 0.85322 0.86071 0.88719 0.90074 0.94909 0.93705 0.95416 0.90849 0.92144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 9.91 71.98 0.71 -1.30 16 2 C -0.14 -2.79 6.26 30.59 0.19 -2.60 16 3 C 0.12 2.49 6.51 86.38 0.56 3.05 16 4 N -0.35 -10.86 3.69 -349.63 -1.29 -12.15 16 5 N -0.09 -3.12 13.93 37.02 0.52 -2.60 16 6 N -0.06 -2.44 13.38 37.02 0.50 -1.94 16 7 N -0.38 -15.70 11.96 -58.69 -0.70 -16.40 16 8 C 0.43 15.63 5.12 260.65 1.34 16.97 16 9 N -0.46 -17.29 4.60 -712.08 -3.28 -20.57 16 10 C 0.05 1.63 9.10 127.69 1.16 2.79 16 11 C 0.20 9.00 1.54 44.17 0.07 9.07 16 12 H 0.01 0.29 7.07 -2.39 -0.02 0.27 16 13 C -0.14 -5.90 8.54 71.98 0.62 -5.29 16 14 C -0.51 -26.05 8.56 25.60 0.22 -25.83 16 15 H 0.07 3.77 6.66 -2.91 -0.02 3.75 16 16 C 0.03 1.89 5.45 84.65 0.46 2.35 16 17 N -0.93 -53.79 13.96 21.45 0.30 -53.49 16 18 Si 0.92 43.27 24.37 68.60 1.67 44.94 16 19 H -0.26 -11.73 6.87 99.48 0.68 -11.04 16 20 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 21 H -0.26 -12.32 6.53 99.48 0.65 -11.67 16 22 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 23 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 24 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.05 1.40 7.53 -2.39 -0.02 1.38 16 26 H 0.07 1.39 8.14 -2.39 -0.02 1.38 16 27 H 0.13 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.12 2.40 8.09 -2.39 -0.02 2.38 16 29 H 0.09 3.39 6.46 -2.39 -0.02 3.37 16 30 H 0.08 2.26 8.06 -2.39 -0.02 2.24 16 31 H 0.03 1.19 8.12 -2.38 -0.02 1.17 16 32 H 0.04 1.95 3.27 -2.39 -0.01 1.94 16 33 H 0.03 1.10 7.22 -2.39 -0.02 1.09 16 34 H 0.07 2.90 7.53 -2.39 -0.02 2.88 16 35 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 Total: -1.00 -62.37 286.43 4.04 -58.33 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: 1.00 Total: 4.68 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: 5.33 Total: -0.79 kcal Atomic # 7 Polarization: -103.20 SS G_CDS: -3.96 Total: -107.16 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 1.67 Total: 44.94 kcal Total: -62.37 4.04 -58.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119643201.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.106 kcal (2) G-P(sol) polarization free energy of solvation -62.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds