Wall clock time and date at job start Sun Mar 29 2020 22:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47217 * 2 1 4 4 H 1.08995 * 109.47005 * 305.00093 * 3 2 1 5 5 C 1.52996 * 109.46858 * 65.00318 * 3 2 1 6 6 N 1.46499 * 109.47082 * 185.00060 * 3 2 1 7 7 N 1.40586 * 127.38897 * 272.43194 * 6 3 2 8 8 N 1.28905 * 106.83918 * 179.97438 * 7 6 3 9 9 N 1.28417 * 110.35261 * 0.02562 * 8 7 6 10 10 C 1.31574 * 110.49984 * 359.74425 * 9 8 7 11 11 N 1.38221 * 126.45945 * 180.29536 * 10 9 8 12 12 C 1.36920 * 119.99910 * 173.82613 * 11 10 9 13 13 H 1.08009 * 120.00413 * 314.42221 * 12 11 10 14 14 C 1.38809 * 119.99886 * 134.42072 * 12 11 10 15 15 N 1.31557 * 119.99933 * 346.18631 * 14 12 11 16 16 Si 1.86800 * 119.99817 * 166.19013 * 14 12 11 17 17 H 1.48493 * 109.47416 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47199 * 119.99868 * 16 14 12 19 19 H 1.48501 * 109.46917 * 239.99645 * 16 14 12 20 20 C 1.46499 * 119.99949 * 353.83282 * 11 10 9 21 21 C 1.53000 * 109.47558 * 85.34160 * 20 11 10 22 22 H 1.09002 * 109.47043 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.46673 * 299.99364 * 1 2 3 24 24 H 1.08999 * 109.47221 * 59.99846 * 1 2 3 25 25 H 1.09007 * 109.47178 * 240.00127 * 2 1 3 26 26 H 1.09000 * 109.47568 * 120.00572 * 2 1 3 27 27 H 1.09004 * 109.47581 * 60.00149 * 5 3 2 28 28 H 1.09002 * 109.47143 * 180.02562 * 5 3 2 29 29 H 1.09000 * 109.46984 * 300.00029 * 5 3 2 30 30 H 0.97004 * 119.99752 * 180.02562 * 15 14 12 31 31 H 1.09000 * 109.46861 * 205.34049 * 20 11 10 32 32 H 1.09000 * 109.47471 * 325.33556 * 20 11 10 33 33 H 1.08995 * 109.46987 * 59.99933 * 21 20 11 34 34 H 1.08998 * 109.47171 * 180.02562 * 21 20 11 35 35 H 1.09000 * 109.46944 * 299.99838 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1265 1.3074 6 7 3.5001 1.4442 -0.1204 7 7 4.4425 1.3654 0.9198 8 7 5.6083 1.3986 0.3708 9 7 5.4985 1.4906 -0.9054 10 6 4.2312 1.5169 -1.2581 11 7 3.7390 1.6043 -2.5467 12 6 2.3933 1.4947 -2.7744 13 1 1.8259 0.7123 -2.2922 14 6 1.7582 2.3891 -3.6249 15 7 2.3714 3.4921 -3.9965 16 14 0.0326 2.0267 -4.2418 17 1 -0.4314 0.7318 -3.6822 18 1 -0.8856 3.1107 -3.8094 19 1 0.0432 1.9491 -5.7248 20 6 4.6571 1.8141 -3.6689 21 6 5.2085 0.4655 -4.1358 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 2.0700 1.5874 2.1492 28 1 1.9983 3.1543 1.3072 29 1 0.5490 2.1251 1.3970 30 1 1.9274 4.1173 -4.5906 31 1 4.1235 2.2924 -4.4903 32 1 5.4808 2.4528 -3.3500 33 1 4.3848 -0.1731 -4.4548 34 1 5.8919 0.6217 -4.9704 35 1 5.7421 -0.0128 -3.3144 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119725757.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:44 Heat of formation + Delta-G solvation = 112.162344 kcal Electronic energy + Delta-G solvation = -18318.656455 eV Core-core repulsion = 15582.477239 eV Total energy + Delta-G solvation = -2736.179215 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.144 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.44309 -37.06564 -36.05093 -32.42435 -31.88563 -30.54062 -29.16545 -28.52803 -25.58593 -24.18103 -22.48619 -22.24832 -20.11484 -19.79467 -17.80889 -16.11967 -15.62807 -15.38370 -14.88775 -14.45262 -13.96574 -13.39191 -12.91350 -12.84908 -12.59336 -12.14299 -11.99364 -11.91368 -11.68226 -11.43087 -11.31811 -11.07867 -10.98534 -10.91657 -10.63137 -10.41606 -10.30312 -10.11536 -9.59929 -9.46582 -9.16146 -8.99099 -7.17205 -6.58313 -4.38611 2.50437 2.95280 2.97728 3.05935 3.09154 3.78045 3.86090 4.62126 4.67276 5.10582 5.23422 5.52260 5.55854 5.78617 5.82305 5.95445 6.06124 6.10724 6.18904 6.22676 6.26787 6.30728 6.33771 6.48477 6.58383 6.69439 6.78426 6.91876 6.99123 7.14139 7.20331 7.46187 7.92694 8.34392 8.92127 9.27547 10.00491 10.39057 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.017939 B = 0.013523 C = 0.008963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.476428 B = 2070.125793 C = 3123.076932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.133 4.133 3 C 0.158 3.842 4 H 0.131 0.869 5 C -0.152 4.152 6 N -0.420 5.420 7 N -0.151 5.151 8 N -0.044 5.044 9 N -0.419 5.419 10 C 0.484 3.516 11 N -0.406 5.406 12 C -0.341 4.341 13 H 0.094 0.906 14 C 0.048 3.952 15 N -0.853 5.853 16 Si 0.914 3.086 17 H -0.263 1.263 18 H -0.277 1.277 19 H -0.275 1.275 20 C 0.140 3.860 21 C -0.163 4.163 22 H 0.054 0.946 23 H 0.057 0.943 24 H 0.060 0.940 25 H 0.070 0.930 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.057 0.943 29 H 0.069 0.931 30 H 0.274 0.726 31 H 0.100 0.900 32 H 0.057 0.943 33 H 0.051 0.949 34 H 0.051 0.949 35 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.478 -3.367 1.252 6.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.172 4.172 3 C 0.054 3.946 4 H 0.148 0.852 5 C -0.210 4.210 6 N -0.225 5.225 7 N -0.140 5.140 8 N -0.040 5.040 9 N -0.289 5.289 10 C 0.124 3.876 11 N -0.113 5.113 12 C -0.470 4.470 13 H 0.112 0.888 14 C -0.161 4.161 15 N -0.487 5.487 16 Si 0.740 3.260 17 H -0.187 1.187 18 H -0.202 1.202 19 H -0.201 1.201 20 C 0.016 3.984 21 C -0.222 4.222 22 H 0.073 0.927 23 H 0.076 0.924 24 H 0.079 0.921 25 H 0.088 0.912 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.118 0.882 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.558 -3.219 1.853 5.880 hybrid contribution -1.750 -0.041 -0.886 1.962 sum -6.309 -3.260 0.967 7.167 Atomic orbital electron populations 1.21765 0.94951 1.01673 1.02201 1.21983 0.96254 0.96420 1.02520 1.21702 0.74440 0.97215 1.01203 0.85170 1.22003 1.01119 1.00978 0.96859 1.50770 1.07535 1.60933 1.03248 1.82063 0.92319 1.29600 1.10046 1.77488 1.16433 1.08639 1.01472 1.74625 1.13452 1.35589 1.05276 1.22385 0.86631 0.93384 0.85239 1.41507 1.05997 1.67060 0.96782 1.19569 0.82693 1.13393 1.31327 0.88824 1.25594 0.99539 0.93476 0.97484 1.69972 1.38573 1.08077 1.32079 0.86049 0.81605 0.79085 0.79294 1.18655 1.20211 1.20059 1.21324 0.91928 0.95331 0.89783 1.22157 1.00270 0.99356 1.00374 0.92688 0.92423 0.92094 0.91170 0.91991 0.91677 0.92374 0.91227 0.91614 0.88223 0.92496 0.92980 0.92981 0.93053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.67 37.16 0.36 -1.62 16 2 C -0.13 -2.20 5.07 -26.73 -0.14 -2.33 16 3 C 0.16 2.97 2.35 -67.93 -0.16 2.81 16 4 H 0.13 2.67 5.53 -51.93 -0.29 2.39 16 5 C -0.15 -2.44 8.85 37.16 0.33 -2.11 16 6 N -0.42 -9.47 3.51 -55.34 -0.19 -9.67 16 7 N -0.15 -3.51 13.33 60.35 0.80 -2.71 16 8 N -0.04 -1.09 13.38 60.35 0.81 -0.28 16 9 N -0.42 -10.50 11.70 30.11 0.35 -10.15 16 10 C 0.48 11.80 8.35 -320.35 -2.67 9.12 16 11 N -0.41 -9.64 2.55 -116.59 -0.30 -9.94 16 12 C -0.34 -7.86 6.61 -15.07 -0.10 -7.96 16 13 H 0.09 2.08 4.70 -52.48 -0.25 1.83 16 14 C 0.05 1.10 5.03 -17.46 -0.09 1.01 16 15 N -0.85 -20.80 11.67 55.49 0.65 -20.15 16 16 Si 0.91 17.59 29.57 -169.99 -5.03 12.56 16 17 H -0.26 -4.85 7.11 56.52 0.40 -4.45 16 18 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 19 H -0.28 -5.36 7.11 56.52 0.40 -4.95 16 20 C 0.14 3.09 5.73 -4.04 -0.02 3.07 16 21 C -0.16 -3.10 10.22 37.16 0.38 -2.72 16 22 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.06 0.68 6.57 -51.93 -0.34 0.33 16 24 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.07 1.28 6.79 -51.93 -0.35 0.93 16 26 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.06 1.04 8.04 -51.93 -0.42 0.62 16 28 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.07 0.91 6.56 -51.93 -0.34 0.57 16 30 H 0.27 6.29 8.31 -40.82 -0.34 5.95 16 31 H 0.10 2.30 5.94 -51.93 -0.31 1.99 16 32 H 0.06 1.29 7.89 -51.93 -0.41 0.88 16 33 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 286.23 15.07 4.31 4.31 Total: -1.00 -26.71 286.23 -5.50 -32.22 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -4.80 Total: 4.54 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: -2.11 Total: -0.73 kcal Atomic # 7 Polarization: -55.01 SS G_CDS: 2.12 Total: -52.90 kcal Atomic # 14 Polarization: 17.59 SS G_CDS: -5.03 Total: 12.56 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -26.71 -5.50 -32.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119725757.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.380 kcal (2) G-P(sol) polarization free energy of solvation -26.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds