Wall clock time and date at job start Sun Mar 29 2020 22:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47217 * 2 1 4 4 H 1.08995 * 109.47005 * 305.00093 * 3 2 1 5 5 C 1.52996 * 109.46858 * 65.00318 * 3 2 1 6 6 N 1.46499 * 109.47082 * 185.00060 * 3 2 1 7 7 N 1.40586 * 127.38897 * 272.43194 * 6 3 2 8 8 N 1.28905 * 106.83918 * 179.97438 * 7 6 3 9 9 N 1.28417 * 110.35261 * 0.02562 * 8 7 6 10 10 C 1.31574 * 110.49984 * 359.74425 * 9 8 7 11 11 N 1.38221 * 126.45945 * 180.29536 * 10 9 8 12 12 C 1.36920 * 119.99910 * 173.82613 * 11 10 9 13 13 H 1.08009 * 120.00413 * 314.42221 * 12 11 10 14 14 C 1.38809 * 119.99886 * 134.42072 * 12 11 10 15 15 N 1.31557 * 119.99933 * 346.18631 * 14 12 11 16 16 Si 1.86800 * 119.99817 * 166.19013 * 14 12 11 17 17 H 1.48493 * 109.47416 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47199 * 119.99868 * 16 14 12 19 19 H 1.48501 * 109.46917 * 239.99645 * 16 14 12 20 20 C 1.46499 * 119.99949 * 353.83282 * 11 10 9 21 21 C 1.53000 * 109.47558 * 85.34160 * 20 11 10 22 22 H 1.09002 * 109.47043 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.46673 * 299.99364 * 1 2 3 24 24 H 1.08999 * 109.47221 * 59.99846 * 1 2 3 25 25 H 1.09007 * 109.47178 * 240.00127 * 2 1 3 26 26 H 1.09000 * 109.47568 * 120.00572 * 2 1 3 27 27 H 1.09004 * 109.47581 * 60.00149 * 5 3 2 28 28 H 1.09002 * 109.47143 * 180.02562 * 5 3 2 29 29 H 1.09000 * 109.46984 * 300.00029 * 5 3 2 30 30 H 0.97004 * 119.99752 * 180.02562 * 15 14 12 31 31 H 1.09000 * 109.46861 * 205.34049 * 20 11 10 32 32 H 1.09000 * 109.47471 * 325.33556 * 20 11 10 33 33 H 1.08995 * 109.46987 * 59.99933 * 21 20 11 34 34 H 1.08998 * 109.47171 * 180.02562 * 21 20 11 35 35 H 1.09000 * 109.46944 * 299.99838 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1265 1.3074 6 7 3.5001 1.4442 -0.1204 7 7 4.4425 1.3654 0.9198 8 7 5.6083 1.3986 0.3708 9 7 5.4985 1.4906 -0.9054 10 6 4.2312 1.5169 -1.2581 11 7 3.7390 1.6043 -2.5467 12 6 2.3933 1.4947 -2.7744 13 1 1.8259 0.7123 -2.2922 14 6 1.7582 2.3891 -3.6249 15 7 2.3714 3.4921 -3.9965 16 14 0.0326 2.0267 -4.2418 17 1 -0.4314 0.7318 -3.6822 18 1 -0.8856 3.1107 -3.8094 19 1 0.0432 1.9491 -5.7248 20 6 4.6571 1.8141 -3.6689 21 6 5.2085 0.4655 -4.1358 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 2.0700 1.5874 2.1492 28 1 1.9983 3.1543 1.3072 29 1 0.5490 2.1251 1.3970 30 1 1.9274 4.1173 -4.5906 31 1 4.1235 2.2924 -4.4903 32 1 5.4808 2.4528 -3.3500 33 1 4.3848 -0.1731 -4.4548 34 1 5.8919 0.6217 -4.9704 35 1 5.7421 -0.0128 -3.3144 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119725757.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:44 Heat of formation + Delta-G solvation = 99.060198 kcal Electronic energy + Delta-G solvation = -18319.224606 eV Core-core repulsion = 15582.477239 eV Total energy + Delta-G solvation = -2736.747367 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.144 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.28301 -38.78550 -37.59755 -34.21084 -33.46979 -32.30646 -30.84884 -29.98148 -27.26555 -25.69991 -24.22979 -23.84198 -21.90027 -21.35359 -19.55734 -17.83890 -17.31418 -17.16657 -16.57687 -15.90693 -15.61582 -14.75651 -14.60173 -14.32781 -14.27463 -13.61384 -13.54587 -13.45377 -13.04532 -12.91785 -12.76589 -12.67545 -12.57064 -12.38073 -12.17897 -11.93920 -11.90308 -11.60640 -11.37671 -11.29991 -10.85477 -10.75579 -8.99076 -8.34591 -6.20208 0.66063 1.28504 1.42811 1.49142 1.59911 1.91426 2.22851 2.88443 2.93570 3.65343 3.88752 4.12341 4.24548 4.32551 4.35632 4.49293 4.60303 4.61395 4.71723 4.83364 4.84604 4.96044 5.03384 5.06352 5.08570 5.13394 5.18264 5.30187 5.43340 5.47323 5.50328 5.76471 6.15534 6.55287 7.12915 7.47073 8.13743 8.64400 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.017939 B = 0.013523 C = 0.008963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.476428 B = 2070.125793 C = 3123.076932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.124 4.124 3 C 0.147 3.853 4 H 0.114 0.886 5 C -0.144 4.144 6 N -0.417 5.417 7 N -0.146 5.146 8 N -0.059 5.059 9 N -0.437 5.437 10 C 0.463 3.537 11 N -0.413 5.413 12 C -0.349 4.349 13 H 0.102 0.898 14 C 0.014 3.986 15 N -0.887 5.887 16 Si 0.976 3.024 17 H -0.247 1.247 18 H -0.275 1.275 19 H -0.277 1.277 20 C 0.140 3.860 21 C -0.148 4.148 22 H 0.073 0.927 23 H 0.078 0.922 24 H 0.055 0.945 25 H 0.047 0.953 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.043 0.957 29 H 0.106 0.894 30 H 0.276 0.724 31 H 0.090 0.910 32 H 0.042 0.958 33 H 0.053 0.947 34 H 0.081 0.919 35 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.510 -4.201 1.375 8.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.163 4.163 3 C 0.045 3.955 4 H 0.132 0.868 5 C -0.202 4.202 6 N -0.223 5.223 7 N -0.136 5.136 8 N -0.055 5.055 9 N -0.308 5.308 10 C 0.103 3.897 11 N -0.121 5.121 12 C -0.477 4.477 13 H 0.119 0.881 14 C -0.192 4.192 15 N -0.522 5.522 16 Si 0.799 3.201 17 H -0.170 1.170 18 H -0.201 1.201 19 H -0.203 1.203 20 C 0.017 3.983 21 C -0.207 4.207 22 H 0.092 0.908 23 H 0.097 0.903 24 H 0.074 0.926 25 H 0.066 0.934 26 H 0.082 0.918 27 H 0.085 0.915 28 H 0.062 0.938 29 H 0.124 0.876 30 H 0.085 0.915 31 H 0.108 0.892 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.100 0.900 35 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -6.593 -4.065 1.989 7.997 hybrid contribution -1.111 0.254 -0.904 1.455 sum -7.704 -3.811 1.085 8.663 Atomic orbital electron populations 1.21762 0.92045 1.03220 1.03007 1.21906 0.98618 0.94271 1.01497 1.22021 0.72371 0.99030 1.02059 0.86797 1.21991 1.03437 0.99614 0.95135 1.51073 1.08693 1.60104 1.02401 1.81947 0.92308 1.28910 1.10475 1.77447 1.16992 1.09620 1.01469 1.74534 1.14401 1.36237 1.05579 1.22602 0.86875 0.94173 0.86054 1.41825 1.06619 1.66837 0.96778 1.19878 0.82659 1.13724 1.31457 0.88055 1.26360 1.02879 0.92876 0.97121 1.70073 1.40281 1.09095 1.32785 0.85109 0.77136 0.79501 0.78389 1.16997 1.20079 1.20296 1.21327 0.91186 0.96750 0.89030 1.22020 1.00578 0.97293 1.00813 0.90844 0.90280 0.92581 0.93387 0.91762 0.91544 0.93801 0.87577 0.91463 0.89246 0.93946 0.92801 0.90049 0.94242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.33 9.67 71.98 0.70 -2.63 16 2 C -0.12 -3.87 5.07 30.60 0.16 -3.71 16 3 C 0.15 5.37 2.35 44.99 0.11 5.47 16 4 H 0.11 4.58 5.53 -2.39 -0.01 4.57 16 5 C -0.14 -4.34 8.85 71.98 0.64 -3.70 16 6 N -0.42 -18.76 3.51 -329.00 -1.16 -19.92 16 7 N -0.15 -6.82 13.33 37.02 0.49 -6.33 16 8 N -0.06 -2.94 13.38 37.02 0.50 -2.44 16 9 N -0.44 -22.23 11.70 -58.67 -0.69 -22.92 16 10 C 0.46 22.83 8.35 260.63 2.18 25.01 16 11 N -0.41 -19.76 2.55 -522.77 -1.33 -21.09 16 12 C -0.35 -15.94 6.61 84.04 0.56 -15.39 16 13 H 0.10 4.41 4.70 -2.91 -0.01 4.39 16 14 C 0.01 0.61 5.03 84.87 0.43 1.04 16 15 N -0.89 -43.35 11.67 21.65 0.25 -43.10 16 16 Si 0.98 34.82 29.57 68.60 2.03 36.84 16 17 H -0.25 -8.11 7.11 99.48 0.71 -7.40 16 18 H -0.28 -9.74 7.11 99.48 0.71 -9.03 16 19 H -0.28 -9.98 7.11 99.48 0.71 -9.27 16 20 C 0.14 6.27 5.73 86.38 0.49 6.77 16 21 C -0.15 -5.57 10.22 71.98 0.74 -4.83 16 22 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 23 H 0.08 1.51 6.57 -2.39 -0.02 1.49 16 24 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.05 1.70 6.79 -2.38 -0.02 1.69 16 26 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.07 1.98 8.04 -2.38 -0.02 1.96 16 28 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.11 2.39 6.56 -2.39 -0.02 2.38 16 30 H 0.28 12.67 8.31 -92.71 -0.77 11.90 16 31 H 0.09 4.18 5.94 -2.39 -0.01 4.16 16 32 H 0.04 1.97 7.89 -2.39 -0.02 1.95 16 33 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 35 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -57.12 286.23 7.16 -49.96 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: 1.09 Total: 20.97 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: 5.98 Total: 8.02 kcal Atomic # 7 Polarization: -113.86 SS G_CDS: -1.93 Total: -115.79 kcal Atomic # 14 Polarization: 34.82 SS G_CDS: 2.03 Total: 36.84 kcal Total: -57.12 7.16 -49.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119725757.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.017 kcal (2) G-P(sol) polarization free energy of solvation -57.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds