Wall clock time and date at job start Sun Mar 29 2020 22:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46873 * 2 1 4 4 H 1.08994 * 109.47554 * 55.00174 * 3 2 1 5 5 C 1.53005 * 109.47380 * 294.99682 * 3 2 1 6 6 N 1.46501 * 109.47036 * 174.99751 * 3 2 1 7 7 N 1.40590 * 127.38432 * 36.29605 * 6 3 2 8 8 N 1.28906 * 106.83888 * 179.97438 * 7 6 3 9 9 N 1.28423 * 110.35200 * 359.72666 * 8 7 6 10 10 C 1.31564 * 110.49731 * 0.45756 * 9 8 7 11 11 N 1.38226 * 126.45900 * 179.82193 * 10 9 8 12 12 C 1.36928 * 119.99978 * 172.46453 * 11 10 9 13 13 H 1.08006 * 120.00229 * 309.82930 * 12 11 10 14 14 C 1.38802 * 119.99813 * 129.82911 * 12 11 10 15 15 N 1.31560 * 120.00068 * 349.33312 * 14 12 11 16 16 Si 1.86802 * 119.99690 * 169.33530 * 14 12 11 17 17 H 1.48499 * 109.47438 * 90.00020 * 16 14 12 18 18 H 1.48508 * 109.46896 * 209.99789 * 16 14 12 19 19 H 1.48503 * 109.47371 * 329.99617 * 16 14 12 20 20 C 1.46499 * 119.99541 * 352.46212 * 11 10 9 21 21 C 1.52991 * 109.47091 * 86.55731 * 20 11 10 22 22 H 1.09005 * 109.47333 * 300.00083 * 1 2 3 23 23 H 1.09005 * 109.46948 * 59.99744 * 1 2 3 24 24 H 1.08995 * 109.46904 * 180.02562 * 1 2 3 25 25 H 1.08992 * 109.46980 * 239.99855 * 2 1 3 26 26 H 1.09000 * 109.46891 * 119.99539 * 2 1 3 27 27 H 1.09000 * 109.46777 * 300.00530 * 5 3 2 28 28 H 1.08997 * 109.46467 * 60.00205 * 5 3 2 29 29 H 1.08990 * 109.46950 * 180.02562 * 5 3 2 30 30 H 0.97003 * 120.00370 * 179.97438 * 15 14 12 31 31 H 1.08994 * 109.47279 * 326.55244 * 20 11 10 32 32 H 1.09003 * 109.46433 * 206.55463 * 20 11 10 33 33 H 1.09004 * 109.47330 * 59.99730 * 21 20 11 34 34 H 1.08999 * 109.47074 * 179.97438 * 21 20 11 35 35 H 1.08997 * 109.47424 * 299.99641 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 1.6353 2.1266 -1.3074 6 7 3.5000 1.4443 0.1204 7 7 4.4041 0.5262 -0.4420 8 7 5.5855 0.9002 -0.0870 9 7 5.5203 1.9604 0.6349 10 6 4.2684 2.3311 0.7969 11 7 3.8218 3.4232 1.5169 12 6 2.5000 3.7779 1.4734 13 1 2.0010 3.8863 0.5216 14 6 1.8013 3.9980 2.6524 15 7 2.3381 3.6665 3.8068 16 14 0.0989 4.7651 2.5998 17 1 -0.9234 3.6940 2.4854 18 1 -0.1335 5.5401 3.8451 19 1 0.0000 5.6710 1.4272 20 6 4.7628 4.2012 2.3265 21 6 5.4209 5.2726 1.4549 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 2.0699 1.5875 -2.1492 28 1 0.5490 2.1252 -1.3969 29 1 1.9990 3.1540 -1.3075 30 1 1.8501 3.8206 4.6308 31 1 5.5292 3.5392 2.7293 32 1 4.2273 4.6788 3.1471 33 1 4.6543 5.9347 1.0522 34 1 6.1206 5.8517 2.0574 35 1 5.9562 4.7951 0.6343 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119725758.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:46 Heat of formation + Delta-G solvation = 110.173574 kcal Electronic energy + Delta-G solvation = -18257.267875 eV Core-core repulsion = 15521.002420 eV Total energy + Delta-G solvation = -2736.265455 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.144 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.44158 -36.99285 -36.06060 -32.42301 -31.93922 -30.48916 -29.03817 -28.73076 -25.27694 -24.41527 -22.55649 -22.25690 -20.15684 -19.61606 -17.76632 -16.13788 -15.64008 -15.34366 -14.86906 -14.48694 -13.97987 -13.38681 -12.96782 -12.83513 -12.59884 -12.18020 -11.98767 -11.89836 -11.65755 -11.49235 -11.31802 -11.06996 -10.99490 -10.79715 -10.61262 -10.57736 -10.22487 -10.08320 -9.60701 -9.47541 -9.17485 -9.00617 -7.11937 -6.57307 -4.44592 2.51399 2.95249 2.98181 3.04963 3.09859 3.78167 3.86605 4.62040 4.67390 5.03032 5.28713 5.54435 5.66027 5.77882 5.80356 5.91577 6.05447 6.12121 6.17673 6.19115 6.26615 6.29809 6.33820 6.54000 6.61328 6.68672 6.78050 6.91352 6.99284 7.12757 7.19301 7.46734 7.95295 8.35598 8.90419 9.28746 10.00343 10.39263 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.017114 B = 0.013873 C = 0.008704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.740344 B = 2017.850807 C = 3216.047568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C 0.154 3.846 4 H 0.136 0.864 5 C -0.162 4.162 6 N -0.418 5.418 7 N -0.150 5.150 8 N -0.045 5.045 9 N -0.419 5.419 10 C 0.487 3.513 11 N -0.408 5.408 12 C -0.341 4.341 13 H 0.088 0.912 14 C 0.051 3.949 15 N -0.852 5.852 16 Si 0.914 3.086 17 H -0.271 1.271 18 H -0.278 1.278 19 H -0.265 1.265 20 C 0.143 3.857 21 C -0.163 4.163 22 H 0.058 0.942 23 H 0.057 0.943 24 H 0.055 0.945 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.055 0.945 28 H 0.071 0.929 29 H 0.061 0.939 30 H 0.274 0.726 31 H 0.057 0.943 32 H 0.096 0.904 33 H 0.051 0.949 34 H 0.051 0.949 35 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.270 0.421 -3.228 6.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C 0.051 3.949 4 H 0.153 0.847 5 C -0.220 4.220 6 N -0.222 5.222 7 N -0.140 5.140 8 N -0.041 5.041 9 N -0.289 5.289 10 C 0.127 3.873 11 N -0.116 5.116 12 C -0.470 4.470 13 H 0.106 0.894 14 C -0.159 4.159 15 N -0.486 5.486 16 Si 0.739 3.261 17 H -0.197 1.197 18 H -0.203 1.203 19 H -0.189 1.189 20 C 0.019 3.981 21 C -0.222 4.222 22 H 0.077 0.923 23 H 0.076 0.924 24 H 0.074 0.926 25 H 0.088 0.912 26 H 0.083 0.917 27 H 0.074 0.926 28 H 0.090 0.910 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.114 0.886 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.388 -0.235 -3.380 5.544 hybrid contribution -1.744 0.838 0.343 1.965 sum -6.132 0.603 -3.037 6.869 Atomic orbital electron populations 1.21792 0.95128 1.01614 1.02184 1.21684 0.95736 0.95689 1.03000 1.21786 0.74440 0.97552 1.01109 0.84682 1.22272 1.01516 1.01172 0.97024 1.50786 1.07760 1.21133 1.42561 1.82069 0.93592 1.14103 1.24208 1.77496 1.15433 1.05306 1.05859 1.74628 1.14655 1.13453 1.26171 1.22442 0.86353 0.86766 0.91732 1.41419 1.07631 1.19124 1.43420 1.19351 0.85301 1.48695 0.93622 0.89419 1.25668 0.99343 0.95709 0.95160 1.69948 1.38617 1.41881 0.98135 0.86113 0.81647 0.79653 0.78643 1.19660 1.20284 1.18899 1.21283 0.91099 0.92385 0.93334 1.22159 1.00017 0.99337 1.00648 0.92333 0.92376 0.92616 0.91195 0.91702 0.92573 0.91046 0.91983 0.91537 0.92491 0.88643 0.92956 0.93011 0.93052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.67 37.16 0.36 -1.61 16 2 C -0.12 -2.02 5.33 -26.73 -0.14 -2.16 16 3 C 0.15 2.93 2.38 -67.93 -0.16 2.77 16 4 H 0.14 2.80 5.30 -51.93 -0.28 2.53 16 5 C -0.16 -2.65 8.86 37.16 0.33 -2.32 16 6 N -0.42 -9.46 3.48 -55.34 -0.19 -9.65 16 7 N -0.15 -3.51 13.47 60.35 0.81 -2.70 16 8 N -0.04 -1.10 13.38 60.35 0.81 -0.30 16 9 N -0.42 -10.51 11.70 30.10 0.35 -10.15 16 10 C 0.49 11.91 8.35 -320.35 -2.67 9.23 16 11 N -0.41 -9.69 2.51 -116.59 -0.29 -9.99 16 12 C -0.34 -7.88 6.32 -15.07 -0.10 -7.97 16 13 H 0.09 1.96 5.39 -52.48 -0.28 1.68 16 14 C 0.05 1.16 5.08 -17.46 -0.09 1.07 16 15 N -0.85 -20.79 11.83 55.49 0.66 -20.13 16 16 Si 0.91 17.57 29.57 -169.99 -5.03 12.54 16 17 H -0.27 -5.11 7.11 56.52 0.40 -4.70 16 18 H -0.28 -5.40 7.11 56.52 0.40 -5.00 16 19 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 20 C 0.14 3.14 5.74 -4.05 -0.02 3.12 16 21 C -0.16 -3.09 10.23 37.15 0.38 -2.71 16 22 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.06 0.69 6.57 -51.93 -0.34 0.34 16 24 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 26 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 27 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.07 0.97 6.56 -51.93 -0.34 0.63 16 29 H 0.06 1.09 6.93 -51.93 -0.36 0.73 16 30 H 0.27 6.33 8.31 -40.82 -0.34 5.99 16 31 H 0.06 1.29 7.87 -51.93 -0.41 0.88 16 32 H 0.10 2.19 6.18 -51.93 -0.32 1.87 16 33 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 287.46 15.07 4.33 4.33 Total: -1.00 -26.67 287.46 -5.51 -32.19 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -4.85 Total: 4.44 kcal Atomic # 6 Polarization: 1.53 SS G_CDS: -2.12 Total: -0.59 kcal Atomic # 7 Polarization: -55.05 SS G_CDS: 2.14 Total: -52.91 kcal Atomic # 14 Polarization: 17.57 SS G_CDS: -5.03 Total: 12.54 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -26.67 -5.51 -32.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119725758.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.359 kcal (2) G-P(sol) polarization free energy of solvation -26.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds