Wall clock time and date at job start Sun Mar 29 2020 22:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.47499 * 2 1 4 4 N 1.46903 * 109.47321 * 240.00149 * 2 1 3 5 5 C 1.46896 * 111.00106 * 84.99663 * 4 2 1 6 6 C 1.52996 * 109.47256 * 180.02562 * 5 4 2 7 7 H 1.09004 * 109.47066 * 60.00378 * 6 5 4 8 8 O 1.42903 * 109.47446 * 300.00254 * 6 5 4 9 9 C 1.50702 * 109.47159 * 180.02562 * 6 5 4 10 10 H 1.08002 * 120.00299 * 0.02562 * 9 6 5 11 11 C 1.37884 * 119.99942 * 179.72211 * 9 6 5 12 12 N 1.31514 * 119.99698 * 0.28408 * 11 9 6 13 13 Si 1.86794 * 119.99837 * 180.27476 * 11 9 6 14 14 H 1.48496 * 109.47341 * 0.02562 * 13 11 9 15 15 H 1.48508 * 109.46983 * 120.00379 * 13 11 9 16 16 H 1.48503 * 109.47491 * 240.00192 * 13 11 9 17 17 C 1.50697 * 109.47277 * 120.00301 * 2 1 3 18 18 C 1.35314 * 126.13202 * 124.68682 * 17 2 1 19 19 C 1.39873 * 107.92362 * 179.90440 * 18 17 2 20 20 N 1.30834 * 108.19784 * 0.36597 * 19 18 17 21 21 N 1.34956 * 126.12331 * 304.99954 * 17 2 1 22 22 C 1.46494 * 126.03707 * 359.97438 * 21 17 2 23 23 H 1.09002 * 109.47432 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47206 * 299.99902 * 1 2 3 25 25 H 1.09002 * 109.46947 * 59.99698 * 1 2 3 26 26 H 1.00900 * 110.99721 * 321.04965 * 4 2 1 27 27 H 1.09004 * 109.46774 * 60.00282 * 5 4 2 28 28 H 1.09000 * 109.47723 * 300.00671 * 5 4 2 29 29 H 0.96697 * 113.99557 * 300.00558 * 8 6 5 30 30 H 0.97005 * 119.99651 * 179.97438 * 12 11 9 31 31 H 1.08001 * 126.03423 * 0.03484 * 18 17 2 32 32 H 1.07995 * 125.89742 * 180.13736 * 19 18 17 33 33 H 1.09006 * 109.47263 * 90.00136 * 22 21 17 34 34 H 1.08998 * 109.47361 * 210.00071 * 22 21 17 35 35 H 1.09002 * 109.47165 * 330.00271 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0824 0.2226 -2.3469 6 6 2.5950 -0.5331 -3.5745 7 1 1.9183 -1.3565 -3.8030 8 8 3.8999 -1.0498 -3.3053 9 6 2.6600 0.4058 -4.7515 10 1 2.3655 1.4384 -4.6354 11 6 3.1013 -0.0519 -5.9750 12 7 3.4602 -1.3092 -6.1161 13 14 3.1890 1.1138 -7.4319 14 1 2.7335 2.4639 -7.0138 15 1 4.5899 1.1932 -7.9186 16 1 2.3142 0.6112 -8.5215 17 6 2.0323 -0.7104 1.2304 18 6 2.8847 -1.7612 1.2529 19 6 3.0948 -2.1164 2.5894 20 7 2.3876 -1.3129 3.3418 21 7 1.7080 -0.4164 2.5070 22 6 0.8047 0.6514 2.9427 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.4495 -1.4978 -1.4101 27 1 2.7588 1.0462 -2.1182 28 1 1.0871 0.6164 -2.5526 29 1 4.5555 -0.3712 -3.0935 30 1 3.7703 -1.6313 -6.9770 31 1 3.3264 -2.2395 0.3912 32 1 3.7282 -2.9180 2.9394 33 1 -0.2133 0.2658 2.9989 34 1 1.1124 1.0093 3.9252 35 1 0.8428 1.4736 2.2282 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119904311.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:04 Heat of formation + Delta-G solvation = 28.052926 kcal Electronic energy + Delta-G solvation = -17060.384381 eV Core-core repulsion = 14288.265157 eV Total energy + Delta-G solvation = -2772.119224 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.06903 -37.10768 -35.10210 -33.22427 -32.08520 -30.78314 -28.85653 -27.37073 -26.67082 -24.37266 -22.60838 -20.93178 -20.53602 -19.38640 -16.97425 -16.63809 -15.44414 -15.07226 -14.72712 -14.57757 -14.33782 -13.94085 -13.58370 -13.34590 -13.01262 -12.76958 -12.52680 -12.46025 -12.11955 -11.73492 -11.27042 -11.18530 -10.95794 -10.79632 -10.76673 -10.45263 -10.05658 -9.09825 -9.02688 -8.59088 -8.24044 -8.12474 -7.83590 -6.01563 -4.20124 2.05116 2.62106 3.11937 3.25738 3.34266 3.36840 4.32014 4.48842 4.65005 4.77667 5.02570 5.14032 5.17374 5.26425 5.26574 5.31521 5.57909 5.68795 5.93796 6.01751 6.05981 6.14248 6.23755 6.47582 6.54633 6.80374 6.94157 7.16608 7.49593 7.66635 7.82293 7.86188 7.92474 8.18631 8.83806 9.45844 9.62066 11.02612 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.046746 B = 0.004921 C = 0.004600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.834119 B = 5689.056792 C = 6084.953567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.147 3.853 3 H 0.087 0.913 4 N -0.665 5.665 5 C 0.036 3.964 6 C 0.235 3.765 7 H 0.052 0.948 8 O -0.554 6.554 9 C -0.574 4.574 10 H 0.055 0.945 11 C 0.080 3.920 12 N -0.857 5.857 13 Si 0.888 3.112 14 H -0.273 1.273 15 H -0.282 1.282 16 H -0.283 1.283 17 C 0.094 3.906 18 C -0.242 4.242 19 C 0.039 3.961 20 N -0.311 5.311 21 N -0.380 5.380 22 C 0.102 3.898 23 H 0.061 0.939 24 H 0.057 0.943 25 H 0.067 0.933 26 H 0.343 0.657 27 H 0.061 0.939 28 H 0.024 0.976 29 H 0.344 0.656 30 H 0.260 0.740 31 H 0.158 0.842 32 H 0.180 0.820 33 H 0.070 0.930 34 H 0.084 0.916 35 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.267 3.077 14.071 15.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.034 3.966 3 H 0.105 0.895 4 N -0.296 5.296 5 C -0.093 4.093 6 C 0.177 3.823 7 H 0.070 0.930 8 O -0.356 6.356 9 C -0.613 4.613 10 H 0.073 0.927 11 C -0.126 4.126 12 N -0.493 5.493 13 Si 0.716 3.284 14 H -0.198 1.198 15 H -0.208 1.208 16 H -0.209 1.209 17 C -0.033 4.033 18 C -0.271 4.271 19 C -0.147 4.147 20 N -0.132 5.132 21 N -0.164 5.164 22 C -0.040 4.040 23 H 0.080 0.920 24 H 0.076 0.924 25 H 0.086 0.914 26 H 0.162 0.838 27 H 0.080 0.920 28 H 0.043 0.957 29 H 0.187 0.813 30 H 0.070 0.930 31 H 0.176 0.824 32 H 0.197 0.803 33 H 0.089 0.911 34 H 0.103 0.897 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.267 2.853 15.226 16.362 hybrid contribution -0.497 1.122 -1.774 2.157 sum -5.764 3.975 13.453 15.166 Atomic orbital electron populations 1.22634 0.96621 1.02765 1.02528 1.19931 0.92075 0.96825 0.87792 0.89479 1.60330 1.56468 1.09736 1.03027 1.22964 0.99016 0.95671 0.91641 1.19294 0.82728 0.92857 0.87421 0.93019 1.86557 1.20292 1.36666 1.92054 1.21664 1.47547 0.96822 0.95254 0.92688 1.25023 0.94183 0.94851 0.98572 1.70092 1.41137 1.14093 1.23969 0.86629 0.77804 0.81249 0.82746 1.19781 1.20845 1.20915 1.21091 0.98446 0.97886 0.85914 1.21385 1.06427 1.01800 0.97523 1.23873 0.99003 0.99089 0.92686 1.77269 1.12987 1.05007 1.17948 1.48333 1.37318 1.26968 1.03739 1.21822 0.92234 0.87896 1.02032 0.92014 0.92365 0.91420 0.83836 0.92017 0.95736 0.81292 0.93024 0.82446 0.80342 0.91132 0.89711 0.89734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.16 8.98 37.15 0.33 -1.83 16 2 C 0.15 2.03 2.64 -68.87 -0.18 1.85 16 3 H 0.09 1.20 7.80 -51.93 -0.40 0.79 16 4 N -0.66 -11.10 5.32 -107.96 -0.57 -11.68 16 5 C 0.04 0.69 5.08 -3.83 -0.02 0.67 16 6 C 0.24 5.74 3.03 -27.88 -0.08 5.66 16 7 H 0.05 1.39 8.14 -51.93 -0.42 0.96 16 8 O -0.55 -14.10 12.59 -35.23 -0.44 -14.54 16 9 C -0.57 -15.37 8.76 -34.44 -0.30 -15.67 16 10 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 11 C 0.08 2.21 5.40 -17.82 -0.10 2.11 16 12 N -0.86 -25.08 12.83 55.43 0.71 -24.37 16 13 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 14 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 15 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 16 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 17 C 0.09 1.37 6.26 -82.26 -0.52 0.86 16 18 C -0.24 -3.72 10.10 -40.01 -0.40 -4.13 16 19 C 0.04 0.55 12.03 -17.37 -0.21 0.34 16 20 N -0.31 -4.70 12.57 30.62 0.39 -4.32 16 21 N -0.38 -5.20 4.01 -63.89 -0.26 -5.45 16 22 C 0.10 0.95 9.73 59.84 0.58 1.53 16 23 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 24 H 0.06 0.55 5.45 -51.93 -0.28 0.27 16 25 H 0.07 0.80 7.45 -51.93 -0.39 0.41 16 26 H 0.34 5.75 8.47 -39.29 -0.33 5.42 16 27 H 0.06 1.19 8.06 -51.93 -0.42 0.77 16 28 H 0.02 0.46 7.44 -51.93 -0.39 0.07 16 29 H 0.34 7.95 9.04 45.56 0.41 8.36 16 30 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 31 H 0.16 2.53 7.79 -52.49 -0.41 2.12 16 32 H 0.18 1.93 8.06 -52.49 -0.42 1.51 16 33 H 0.07 0.56 7.80 -51.93 -0.41 0.15 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.08 0.65 7.19 -51.93 -0.37 0.28 16 LS Contribution 295.21 15.07 4.45 4.45 Total: -1.00 -31.54 295.21 -5.87 -37.40 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -4.22 Total: 11.32 kcal Atomic # 6 Polarization: -7.73 SS G_CDS: -0.90 Total: -8.62 kcal Atomic # 7 Polarization: -46.08 SS G_CDS: 0.27 Total: -45.82 kcal Atomic # 8 Polarization: -14.10 SS G_CDS: -0.44 Total: -14.54 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -31.54 -5.87 -37.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119904311.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.457 kcal (2) G-P(sol) polarization free energy of solvation -31.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds