Wall clock time and date at job start Sun Mar 29 2020 22:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.47499 * 2 1 4 4 N 1.46903 * 109.47321 * 240.00149 * 2 1 3 5 5 C 1.46896 * 111.00106 * 84.99663 * 4 2 1 6 6 C 1.52996 * 109.47256 * 180.02562 * 5 4 2 7 7 H 1.09004 * 109.47066 * 60.00378 * 6 5 4 8 8 O 1.42903 * 109.47446 * 300.00254 * 6 5 4 9 9 C 1.50702 * 109.47159 * 180.02562 * 6 5 4 10 10 H 1.08002 * 120.00299 * 0.02562 * 9 6 5 11 11 C 1.37884 * 119.99942 * 179.72211 * 9 6 5 12 12 N 1.31514 * 119.99698 * 0.28408 * 11 9 6 13 13 Si 1.86794 * 119.99837 * 180.27476 * 11 9 6 14 14 H 1.48496 * 109.47341 * 0.02562 * 13 11 9 15 15 H 1.48508 * 109.46983 * 120.00379 * 13 11 9 16 16 H 1.48503 * 109.47491 * 240.00192 * 13 11 9 17 17 C 1.50697 * 109.47277 * 120.00301 * 2 1 3 18 18 C 1.35314 * 126.13202 * 124.68682 * 17 2 1 19 19 C 1.39873 * 107.92362 * 179.90440 * 18 17 2 20 20 N 1.30834 * 108.19784 * 0.36597 * 19 18 17 21 21 N 1.34956 * 126.12331 * 304.99954 * 17 2 1 22 22 C 1.46494 * 126.03707 * 359.97438 * 21 17 2 23 23 H 1.09002 * 109.47432 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47206 * 299.99902 * 1 2 3 25 25 H 1.09002 * 109.46947 * 59.99698 * 1 2 3 26 26 H 1.00900 * 110.99721 * 321.04965 * 4 2 1 27 27 H 1.09004 * 109.46774 * 60.00282 * 5 4 2 28 28 H 1.09000 * 109.47723 * 300.00671 * 5 4 2 29 29 H 0.96697 * 113.99557 * 300.00558 * 8 6 5 30 30 H 0.97005 * 119.99651 * 179.97438 * 12 11 9 31 31 H 1.08001 * 126.03423 * 0.03484 * 18 17 2 32 32 H 1.07995 * 125.89742 * 180.13736 * 19 18 17 33 33 H 1.09006 * 109.47263 * 90.00136 * 22 21 17 34 34 H 1.08998 * 109.47361 * 210.00071 * 22 21 17 35 35 H 1.09002 * 109.47165 * 330.00271 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0824 0.2226 -2.3469 6 6 2.5950 -0.5331 -3.5745 7 1 1.9183 -1.3565 -3.8030 8 8 3.8999 -1.0498 -3.3053 9 6 2.6600 0.4058 -4.7515 10 1 2.3655 1.4384 -4.6354 11 6 3.1013 -0.0519 -5.9750 12 7 3.4602 -1.3092 -6.1161 13 14 3.1890 1.1138 -7.4319 14 1 2.7335 2.4639 -7.0138 15 1 4.5899 1.1932 -7.9186 16 1 2.3142 0.6112 -8.5215 17 6 2.0323 -0.7104 1.2304 18 6 2.8847 -1.7612 1.2529 19 6 3.0948 -2.1164 2.5894 20 7 2.3876 -1.3129 3.3418 21 7 1.7080 -0.4164 2.5070 22 6 0.8047 0.6514 2.9427 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.4495 -1.4978 -1.4101 27 1 2.7588 1.0462 -2.1182 28 1 1.0871 0.6164 -2.5526 29 1 4.5555 -0.3712 -3.0935 30 1 3.7703 -1.6313 -6.9770 31 1 3.3264 -2.2395 0.3912 32 1 3.7282 -2.9180 2.9394 33 1 -0.2133 0.2658 2.9989 34 1 1.1124 1.0093 3.9252 35 1 0.8428 1.4736 2.2282 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119904311.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:04 Heat of formation + Delta-G solvation = 3.533404 kcal Electronic energy + Delta-G solvation = -17061.447627 eV Core-core repulsion = 14288.265157 eV Total energy + Delta-G solvation = -2773.182471 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.14537 -38.61392 -36.76892 -34.26593 -34.14544 -32.16405 -30.02436 -29.05518 -27.56674 -26.08079 -23.82939 -22.53913 -21.77937 -20.47861 -18.95509 -17.84555 -16.64092 -16.57565 -16.38737 -15.90889 -15.83154 -15.40245 -14.91871 -14.55703 -14.17927 -14.10918 -13.90621 -13.43780 -13.26700 -13.04567 -12.85850 -12.80036 -12.66239 -12.41647 -12.23072 -11.96658 -11.56216 -10.98714 -10.68619 -10.14124 -10.05001 -9.35733 -9.21099 -8.10411 -6.35873 0.96396 1.41832 1.43704 1.55012 1.66902 1.99237 2.41088 3.15964 3.23930 3.63990 3.81208 4.08873 4.11745 4.38353 4.39874 4.41594 4.49303 4.55689 4.64123 4.70416 4.76582 4.89928 5.01358 5.09102 5.17093 5.39643 5.64719 5.80405 5.85289 6.01307 6.13119 6.26311 6.47312 6.78426 6.82261 7.38739 7.66925 8.94263 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.046746 B = 0.004921 C = 0.004600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.834119 B = 5689.056792 C = 6084.953567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.151 3.849 3 H 0.094 0.906 4 N -0.673 5.673 5 C 0.058 3.942 6 C 0.233 3.767 7 H 0.019 0.981 8 O -0.571 6.571 9 C -0.585 4.585 10 H 0.061 0.939 11 C 0.026 3.974 12 N -0.900 5.900 13 Si 0.958 3.042 14 H -0.262 1.262 15 H -0.282 1.282 16 H -0.281 1.281 17 C 0.091 3.909 18 C -0.268 4.268 19 C 0.037 3.963 20 N -0.331 5.331 21 N -0.378 5.378 22 C 0.089 3.911 23 H 0.055 0.945 24 H 0.084 0.916 25 H 0.067 0.933 26 H 0.341 0.659 27 H 0.065 0.935 28 H 0.033 0.967 29 H 0.352 0.648 30 H 0.260 0.740 31 H 0.143 0.857 32 H 0.204 0.796 33 H 0.087 0.913 34 H 0.095 0.905 35 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.119 4.792 14.803 16.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.039 3.961 3 H 0.112 0.888 4 N -0.303 5.303 5 C -0.071 4.071 6 C 0.175 3.825 7 H 0.037 0.963 8 O -0.374 6.374 9 C -0.624 4.624 10 H 0.079 0.921 11 C -0.177 4.177 12 N -0.537 5.537 13 Si 0.783 3.217 14 H -0.186 1.186 15 H -0.207 1.207 16 H -0.206 1.206 17 C -0.037 4.037 18 C -0.297 4.297 19 C -0.148 4.148 20 N -0.153 5.153 21 N -0.162 5.162 22 C -0.051 4.051 23 H 0.075 0.925 24 H 0.103 0.897 25 H 0.086 0.914 26 H 0.159 0.841 27 H 0.083 0.917 28 H 0.051 0.949 29 H 0.197 0.803 30 H 0.069 0.931 31 H 0.161 0.839 32 H 0.221 0.779 33 H 0.106 0.894 34 H 0.114 0.886 35 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -6.137 4.595 15.990 17.733 hybrid contribution -0.243 0.576 -1.934 2.032 sum -6.381 5.171 14.056 16.280 Atomic orbital electron populations 1.22555 0.94528 1.02866 1.03842 1.19931 0.93629 0.96487 0.86040 0.88796 1.60177 1.57452 1.09546 1.03155 1.22499 0.99118 0.95058 0.90388 1.19197 0.82002 0.91837 0.89489 0.96320 1.86506 1.21095 1.37538 1.92239 1.22086 1.46717 0.97366 0.96192 0.92061 1.25883 0.93877 0.96304 1.01609 1.70233 1.42636 1.16150 1.24709 0.85531 0.77660 0.79423 0.79047 1.18584 1.20742 1.20637 1.21145 0.98208 0.97714 0.86633 1.21417 1.07646 1.02908 0.97760 1.24260 0.98978 0.99481 0.92070 1.77224 1.13699 1.05729 1.18697 1.48634 1.37208 1.27202 1.03108 1.22217 0.92295 0.87400 1.03200 0.92547 0.89739 0.91380 0.84061 0.91657 0.94857 0.80335 0.93093 0.83948 0.77937 0.89412 0.88613 0.87850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.71 8.98 71.98 0.65 -3.06 16 2 C 0.15 3.93 2.64 44.17 0.12 4.04 16 3 H 0.09 2.34 7.80 -2.38 -0.02 2.33 16 4 N -0.67 -22.10 5.32 -495.46 -2.64 -24.73 16 5 C 0.06 2.20 5.08 86.30 0.44 2.64 16 6 C 0.23 11.48 3.03 29.85 0.09 11.57 16 7 H 0.02 1.05 8.14 -2.38 -0.02 1.03 16 8 O -0.57 -29.54 12.59 -148.98 -1.87 -31.41 16 9 C -0.59 -31.18 8.76 25.60 0.22 -30.96 16 10 H 0.06 3.12 7.74 -2.91 -0.02 3.10 16 11 C 0.03 1.41 5.40 84.66 0.46 1.86 16 12 N -0.90 -53.46 12.83 21.45 0.28 -53.18 16 13 Si 0.96 42.58 29.54 68.60 2.03 44.61 16 14 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 15 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 16 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 17 C 0.09 2.56 6.26 41.40 0.26 2.82 16 18 C -0.27 -8.17 10.10 21.99 0.22 -7.95 16 19 C 0.04 1.01 12.03 85.24 1.03 2.03 16 20 N -0.33 -9.58 12.57 -57.03 -0.72 -10.30 16 21 N -0.38 -9.59 4.01 -356.04 -1.43 -11.02 16 22 C 0.09 1.38 9.73 127.77 1.24 2.62 16 23 H 0.06 1.24 8.13 -2.39 -0.02 1.23 16 24 H 0.08 1.30 5.45 -2.39 -0.01 1.29 16 25 H 0.07 1.43 7.45 -2.39 -0.02 1.41 16 26 H 0.34 11.47 8.47 -89.69 -0.76 10.71 16 27 H 0.06 2.41 8.06 -2.38 -0.02 2.39 16 28 H 0.03 1.19 7.44 -2.39 -0.02 1.17 16 29 H 0.35 16.46 9.04 -74.06 -0.67 15.79 16 30 H 0.26 14.62 8.31 -92.70 -0.77 13.85 16 31 H 0.14 4.71 7.79 -2.91 -0.02 4.69 16 32 H 0.20 4.19 8.06 -2.91 -0.02 4.17 16 33 H 0.09 1.09 7.80 -2.38 -0.02 1.07 16 34 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.10 1.21 7.19 -2.39 -0.02 1.20 16 Total: -1.00 -67.32 295.21 0.04 -67.28 By element: Atomic # 1 Polarization: 33.46 SS G_CDS: -0.33 Total: 33.13 kcal Atomic # 6 Polarization: -19.11 SS G_CDS: 4.72 Total: -14.38 kcal Atomic # 7 Polarization: -94.72 SS G_CDS: -4.51 Total: -99.23 kcal Atomic # 8 Polarization: -29.54 SS G_CDS: -1.87 Total: -31.41 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Total: -67.32 0.04 -67.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119904311.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.818 kcal (2) G-P(sol) polarization free energy of solvation -67.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds