Wall clock time and date at job start Sun Mar 29 2020 22:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00386 * 2 1 4 4 H 1.48497 * 109.47046 * 270.00230 * 3 2 1 5 5 H 1.48504 * 109.46984 * 30.00149 * 3 2 1 6 6 H 1.48504 * 109.47150 * 149.99940 * 3 2 1 7 7 C 1.37883 * 119.99963 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99579 * 359.97438 * 7 2 1 9 9 C 1.50695 * 120.00204 * 179.97438 * 7 2 1 10 10 N 1.46501 * 109.47116 * 179.97438 * 9 7 2 11 11 C 1.34775 * 119.99896 * 179.97438 * 10 9 7 12 12 O 1.21581 * 120.00509 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99917 * 180.02562 * 11 10 9 14 14 C 1.46499 * 120.00273 * 180.02562 * 13 11 10 15 15 H 1.09001 * 110.66939 * 32.05169 * 14 13 11 16 16 C 1.55858 * 111.59454 * 269.09093 * 14 13 11 17 17 C 1.55845 * 103.60565 * 242.17478 * 16 14 13 18 18 H 1.09001 * 116.15487 * 158.61821 * 17 16 14 19 19 C 1.55853 * 105.03447 * 287.66578 * 17 16 14 20 20 C 1.54832 * 103.52016 * 71.72361 * 19 17 16 21 21 C 1.55849 * 110.61494 * 154.99797 * 14 13 11 22 22 H 1.09002 * 115.58195 * 319.62146 * 21 14 13 23 23 N 1.50650 * 101.02821 * 32.38406 * 17 16 14 24 24 H 0.97005 * 119.99842 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.46829 * 60.00370 * 9 7 2 26 26 H 1.08992 * 109.47104 * 300.00004 * 9 7 2 27 27 H 0.97003 * 120.00155 * 0.02562 * 10 9 7 28 28 H 0.97003 * 120.00134 * 0.02562 * 13 11 10 29 29 H 1.08998 * 111.09589 * 123.38691 * 16 14 13 30 30 H 1.09001 * 110.18997 * 0.52233 * 16 14 13 31 31 H 1.08999 * 110.61739 * 190.23714 * 19 17 16 32 32 H 1.08998 * 110.60927 * 313.05981 * 19 17 16 33 33 H 1.08996 * 110.61501 * 241.49540 * 20 19 17 34 34 H 1.09003 * 110.61487 * 118.50719 * 20 19 17 35 35 H 1.00900 * 110.99970 * 62.35070 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 7 3.9998 -2.5754 -0.0010 11 6 5.3248 -2.8217 -0.0020 12 8 6.1150 -1.8977 -0.0025 13 7 5.7740 -4.0924 -0.0024 14 6 7.2143 -4.3602 -0.0029 15 1 7.7508 -3.5809 0.5383 16 6 7.7736 -4.4874 -1.4521 17 6 8.3075 -5.9503 -1.5120 18 1 8.4137 -6.3827 -2.5069 19 6 9.5985 -5.9456 -0.6389 20 6 9.0578 -5.8164 0.8061 21 6 7.5123 -5.7604 0.6132 22 1 6.9188 -6.0256 1.4882 23 7 7.3400 -6.6480 -0.5918 24 1 -0.4850 0.8401 0.0004 25 1 3.8751 -0.6806 0.8889 26 1 3.8745 -0.6802 -0.8911 27 1 3.3694 -3.3127 -0.0010 28 1 5.1436 -4.8297 -0.0024 29 1 8.5818 -3.7766 -1.6245 30 1 6.9740 -4.3408 -2.1782 31 1 10.1479 -6.8791 -0.7611 32 1 10.2300 -5.0941 -0.8925 33 1 9.4200 -4.8993 1.2708 34 1 9.3391 -6.6859 1.4003 35 1 6.3980 -6.5938 -0.9491 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001120531934.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:32 Heat of formation + Delta-G solvation = -15.108096 kcal Electronic energy + Delta-G solvation = -17096.496009 eV Core-core repulsion = 14322.505182 eV Total energy + Delta-G solvation = -2773.990827 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.77691 -38.90765 -34.40763 -33.82838 -32.31180 -30.38895 -29.61613 -28.88422 -27.22119 -22.79920 -21.67445 -20.86089 -20.27786 -19.64055 -18.27729 -17.09279 -16.44098 -16.25210 -15.04097 -14.86863 -14.57352 -14.02797 -13.72614 -13.12765 -13.01640 -12.60820 -12.34586 -12.27093 -12.20317 -11.86477 -11.47987 -11.34327 -11.02489 -10.99637 -10.76018 -10.47210 -9.97112 -9.60902 -9.46499 -9.14855 -8.83015 -8.74732 -8.04432 -6.21282 -4.23271 3.15928 3.27688 3.34858 3.43084 3.73721 3.86159 4.33884 4.38518 4.53722 4.63422 4.87709 4.90114 5.03880 5.14089 5.15418 5.22104 5.36602 5.44264 5.55357 5.76268 5.86944 5.96343 5.98562 6.02464 6.29383 6.72188 6.76528 7.01039 7.10535 7.22309 7.38871 7.54229 8.27385 8.67178 8.80306 9.18294 9.40043 10.90700 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.057693 B = 0.004648 C = 0.004506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.212541 B = 6022.087464 C = 6211.999766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.078 3.922 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.543 4.543 8 H 0.079 0.921 9 C 0.238 3.762 10 N -0.722 5.722 11 C 0.695 3.305 12 O -0.602 6.602 13 N -0.748 5.748 14 C 0.132 3.868 15 H 0.096 0.904 16 C -0.165 4.165 17 C 0.047 3.953 18 H 0.113 0.887 19 C -0.116 4.116 20 C -0.112 4.112 21 C 0.042 3.958 22 H 0.117 0.883 23 N -0.649 5.649 24 H 0.268 0.732 25 H 0.023 0.977 26 H 0.018 0.982 27 H 0.392 0.608 28 H 0.391 0.609 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.331 0.669 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.059 -13.075 -0.796 20.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.126 4.126 3 Si 0.704 3.296 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.185 1.185 7 C -0.581 4.581 8 H 0.097 0.903 9 C 0.116 3.884 10 N -0.374 5.374 11 C 0.395 3.605 12 O -0.482 6.482 13 N -0.404 5.404 14 C 0.024 3.976 15 H 0.114 0.886 16 C -0.206 4.206 17 C -0.063 4.063 18 H 0.131 0.869 19 C -0.154 4.154 20 C -0.150 4.150 21 C -0.069 4.069 22 H 0.135 0.865 23 N -0.276 5.276 24 H 0.077 0.923 25 H 0.041 0.959 26 H 0.036 0.964 27 H 0.225 0.775 28 H 0.224 0.776 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 16.974 -12.718 -0.578 21.218 hybrid contribution -0.858 1.163 -0.349 1.486 sum 16.117 -11.555 -0.927 19.853 Atomic orbital electron populations 1.69882 1.06212 1.27422 1.49523 1.24781 0.94785 0.99161 0.93874 0.86809 0.80591 0.83190 0.79054 1.19859 1.20897 1.18471 1.21094 0.88548 0.95198 1.53241 0.90311 1.19355 0.94839 0.77620 0.96610 1.45408 1.03693 1.11075 1.77245 1.16132 0.83557 0.82723 0.78096 1.90858 1.55379 1.43151 1.58792 1.45114 1.06875 1.06592 1.81806 1.22682 0.81077 0.98082 0.95759 0.88572 1.24000 1.01462 0.97547 0.97544 1.24316 0.93482 0.91775 0.96748 0.86879 1.22621 0.96312 1.01826 0.94643 1.22526 0.93245 1.02112 0.97119 1.24581 0.97666 0.89669 0.94991 0.86502 1.66030 1.10053 1.46894 1.04621 0.92262 0.95925 0.96414 0.77475 0.77574 0.90381 0.91028 0.91264 0.91247 0.91029 0.90787 0.85454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.62 13.96 55.43 0.77 -25.85 16 2 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 3 Si 0.88 21.62 27.47 -169.99 -4.67 16.95 16 4 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.26 -6.41 6.54 56.52 0.37 -6.04 16 7 C -0.54 -15.01 9.83 -34.44 -0.34 -15.35 16 8 H 0.08 2.26 7.84 -52.48 -0.41 1.85 16 9 C 0.24 5.98 4.50 -5.20 -0.02 5.95 16 10 N -0.72 -14.91 5.55 -66.42 -0.37 -15.28 16 11 C 0.70 13.68 8.57 -86.92 -0.74 12.93 16 12 O -0.60 -14.30 15.99 5.29 0.08 -14.21 16 13 N -0.75 -10.53 5.14 -55.71 -0.29 -10.82 16 14 C 0.13 1.64 2.72 -64.88 -0.18 1.46 16 15 H 0.10 1.41 7.27 -51.93 -0.38 1.03 16 16 C -0.16 -1.88 6.18 -23.69 -0.15 -2.02 16 17 C 0.05 0.43 5.59 -62.56 -0.35 0.08 16 18 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 19 C -0.12 -0.97 6.43 -24.24 -0.16 -1.13 16 20 C -0.11 -0.97 6.45 -24.24 -0.16 -1.13 16 21 C 0.04 0.41 5.12 -62.55 -0.32 0.09 16 22 H 0.12 1.08 8.14 -51.93 -0.42 0.66 16 23 N -0.65 -6.19 7.71 -88.22 -0.68 -6.87 16 24 H 0.27 7.45 8.31 -40.82 -0.34 7.12 16 25 H 0.02 0.60 7.20 -51.93 -0.37 0.23 16 26 H 0.02 0.47 7.57 -51.93 -0.39 0.07 16 27 H 0.39 7.09 8.34 -40.82 -0.34 6.75 16 28 H 0.39 4.43 8.53 -40.82 -0.35 4.09 16 29 H 0.08 0.91 7.82 -51.93 -0.41 0.50 16 30 H 0.07 0.91 8.01 -51.93 -0.42 0.49 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.55 7.82 -51.93 -0.41 0.14 16 33 H 0.07 0.61 7.85 -51.93 -0.41 0.21 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.33 3.03 8.51 -39.29 -0.33 2.70 16 LS Contribution 285.06 15.07 4.30 4.30 Total: -1.00 -32.43 285.06 -8.43 -40.86 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -5.07 Total: 7.92 kcal Atomic # 6 Polarization: 5.50 SS G_CDS: -2.51 Total: 2.99 kcal Atomic # 7 Polarization: -58.25 SS G_CDS: -0.56 Total: -58.81 kcal Atomic # 8 Polarization: -14.30 SS G_CDS: 0.08 Total: -14.21 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.67 Total: 16.95 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -32.43 -8.43 -40.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120531934.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.752 kcal (2) G-P(sol) polarization free energy of solvation -32.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds