Wall clock time and date at job start Sun Mar 29 2020 22:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00386 * 2 1 4 4 H 1.48497 * 109.47046 * 270.00230 * 3 2 1 5 5 H 1.48504 * 109.46984 * 30.00149 * 3 2 1 6 6 H 1.48504 * 109.47150 * 149.99940 * 3 2 1 7 7 C 1.37883 * 119.99963 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99579 * 359.97438 * 7 2 1 9 9 C 1.50695 * 120.00204 * 179.97438 * 7 2 1 10 10 N 1.46501 * 109.47116 * 179.97438 * 9 7 2 11 11 C 1.34775 * 119.99896 * 179.97438 * 10 9 7 12 12 O 1.21581 * 120.00509 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99917 * 180.02562 * 11 10 9 14 14 C 1.46499 * 120.00273 * 180.02562 * 13 11 10 15 15 H 1.09001 * 110.66939 * 32.05169 * 14 13 11 16 16 C 1.55858 * 111.59454 * 269.09093 * 14 13 11 17 17 C 1.55845 * 103.60565 * 242.17478 * 16 14 13 18 18 H 1.09001 * 116.15487 * 158.61821 * 17 16 14 19 19 C 1.55853 * 105.03447 * 287.66578 * 17 16 14 20 20 C 1.54832 * 103.52016 * 71.72361 * 19 17 16 21 21 C 1.55849 * 110.61494 * 154.99797 * 14 13 11 22 22 H 1.09002 * 115.58195 * 319.62146 * 21 14 13 23 23 N 1.50650 * 101.02821 * 32.38406 * 17 16 14 24 24 H 0.97005 * 119.99842 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.46829 * 60.00370 * 9 7 2 26 26 H 1.08992 * 109.47104 * 300.00004 * 9 7 2 27 27 H 0.97003 * 120.00155 * 0.02562 * 10 9 7 28 28 H 0.97003 * 120.00134 * 0.02562 * 13 11 10 29 29 H 1.08998 * 111.09589 * 123.38691 * 16 14 13 30 30 H 1.09001 * 110.18997 * 0.52233 * 16 14 13 31 31 H 1.08999 * 110.61739 * 190.23714 * 19 17 16 32 32 H 1.08998 * 110.60927 * 313.05981 * 19 17 16 33 33 H 1.08996 * 110.61501 * 241.49540 * 20 19 17 34 34 H 1.09003 * 110.61487 * 118.50719 * 20 19 17 35 35 H 1.00900 * 110.99970 * 62.35070 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 7 3.9998 -2.5754 -0.0010 11 6 5.3248 -2.8217 -0.0020 12 8 6.1150 -1.8977 -0.0025 13 7 5.7740 -4.0924 -0.0024 14 6 7.2143 -4.3602 -0.0029 15 1 7.7508 -3.5809 0.5383 16 6 7.7736 -4.4874 -1.4521 17 6 8.3075 -5.9503 -1.5120 18 1 8.4137 -6.3827 -2.5069 19 6 9.5985 -5.9456 -0.6389 20 6 9.0578 -5.8164 0.8061 21 6 7.5123 -5.7604 0.6132 22 1 6.9188 -6.0256 1.4882 23 7 7.3400 -6.6480 -0.5918 24 1 -0.4850 0.8401 0.0004 25 1 3.8751 -0.6806 0.8889 26 1 3.8745 -0.6802 -0.8911 27 1 3.3694 -3.3127 -0.0010 28 1 5.1436 -4.8297 -0.0024 29 1 8.5818 -3.7766 -1.6245 30 1 6.9740 -4.3408 -2.1782 31 1 10.1479 -6.8791 -0.7611 32 1 10.2300 -5.0941 -0.8925 33 1 9.4200 -4.8993 1.2708 34 1 9.3391 -6.6859 1.4003 35 1 6.3980 -6.5938 -0.9491 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120531934.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:31 Heat of formation + Delta-G solvation = -41.553274 kcal Electronic energy + Delta-G solvation = -17097.642758 eV Core-core repulsion = 14322.505182 eV Total energy + Delta-G solvation = -2775.137576 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.76549 -40.36054 -36.23145 -35.23116 -34.35772 -31.16823 -30.43036 -30.34899 -28.74661 -24.45080 -22.98163 -21.81679 -21.67405 -20.53984 -19.88679 -18.36170 -17.96597 -17.46680 -16.58868 -16.31339 -16.14983 -15.46377 -14.91804 -14.81604 -14.36763 -14.31945 -13.81575 -13.13211 -13.04267 -12.98799 -12.90506 -12.69585 -12.34680 -12.09138 -11.93801 -11.82073 -11.67217 -11.43882 -11.10569 -10.92752 -10.38076 -9.89398 -9.63392 -8.40809 -6.47795 1.32673 1.34594 1.47889 1.78901 2.15823 2.27975 2.94803 3.05031 3.39079 3.66397 3.71269 3.81843 4.05842 4.19918 4.32950 4.47172 4.52470 4.62308 4.73591 4.78700 5.00435 5.03255 5.07135 5.13710 5.21300 5.23577 5.26588 5.50696 5.53227 5.60903 5.94381 6.24827 6.26620 6.54197 7.12209 7.23238 7.63013 8.73942 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.057693 B = 0.004648 C = 0.004506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.212541 B = 6022.087464 C = 6211.999766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.028 3.972 3 Si 0.938 3.062 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.262 1.262 7 C -0.547 4.547 8 H 0.059 0.941 9 C 0.252 3.748 10 N -0.721 5.721 11 C 0.695 3.305 12 O -0.644 6.644 13 N -0.725 5.725 14 C 0.125 3.875 15 H 0.073 0.927 16 C -0.163 4.163 17 C 0.054 3.946 18 H 0.129 0.871 19 C -0.115 4.115 20 C -0.112 4.112 21 C 0.050 3.950 22 H 0.126 0.874 23 N -0.648 5.648 24 H 0.273 0.727 25 H 0.010 0.990 26 H 0.008 0.992 27 H 0.405 0.595 28 H 0.408 0.592 29 H 0.072 0.928 30 H 0.057 0.943 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.333 0.667 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.428 -14.098 -0.880 22.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.173 4.173 3 Si 0.761 3.239 4 H -0.190 1.190 5 H -0.197 1.197 6 H -0.186 1.186 7 C -0.584 4.584 8 H 0.077 0.923 9 C 0.128 3.872 10 N -0.375 5.375 11 C 0.395 3.605 12 O -0.526 6.526 13 N -0.381 5.381 14 C 0.018 3.982 15 H 0.091 0.909 16 C -0.203 4.203 17 C -0.056 4.056 18 H 0.147 0.853 19 C -0.153 4.153 20 C -0.150 4.150 21 C -0.061 4.061 22 H 0.144 0.856 23 N -0.274 5.274 24 H 0.082 0.918 25 H 0.028 0.972 26 H 0.026 0.974 27 H 0.240 0.760 28 H 0.244 0.756 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.099 0.901 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.104 0.896 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 18.346 -13.821 -0.665 22.979 hybrid contribution -1.278 1.385 -0.327 1.913 sum 17.068 -12.435 -0.992 21.141 Atomic orbital electron populations 1.69978 1.07658 1.28651 1.50647 1.25571 0.95530 1.02616 0.93534 0.85855 0.79214 0.79335 0.79464 1.18984 1.19664 1.18610 1.21269 0.89835 0.94620 1.52718 0.92252 1.18937 0.93077 0.79813 0.95422 1.45118 1.04614 1.09925 1.77812 1.16237 0.82654 0.83927 0.77688 1.90828 1.56196 1.45003 1.60576 1.44914 1.08187 1.05029 1.79939 1.22899 0.79388 0.99154 0.96788 0.90884 1.23953 1.00862 0.99364 0.96155 1.24391 0.93642 0.89850 0.97695 0.85312 1.22648 0.95999 1.02616 0.94042 1.22568 0.92200 1.02623 0.97656 1.24603 0.98706 0.87475 0.95271 0.85608 1.66054 1.10376 1.46416 1.04564 0.91791 0.97242 0.97415 0.75993 0.75615 0.90890 0.92422 0.90129 0.90907 0.91149 0.89626 0.85157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.72 13.96 21.45 0.30 -55.42 16 2 C 0.03 1.59 5.47 84.66 0.46 2.05 16 3 Si 0.94 44.44 27.47 68.60 1.88 46.33 16 4 H -0.26 -12.15 7.11 99.48 0.71 -11.44 16 5 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 6 H -0.26 -12.39 6.54 99.48 0.65 -11.74 16 7 C -0.55 -30.45 9.83 25.60 0.25 -30.20 16 8 H 0.06 3.46 7.84 -2.91 -0.02 3.44 16 9 C 0.25 12.64 4.50 85.63 0.38 13.03 16 10 N -0.72 -29.59 5.55 -482.33 -2.68 -32.27 16 11 C 0.70 27.09 8.57 179.06 1.53 28.63 16 12 O -0.64 -30.67 15.99 -3.97 -0.06 -30.73 16 13 N -0.72 -19.64 5.14 -448.44 -2.31 -21.94 16 14 C 0.12 2.97 2.72 46.97 0.13 3.10 16 15 H 0.07 2.13 7.27 -2.39 -0.02 2.11 16 16 C -0.16 -3.52 6.18 32.57 0.20 -3.32 16 17 C 0.05 0.86 5.59 46.15 0.26 1.12 16 18 H 0.13 1.70 8.14 -2.39 -0.02 1.68 16 19 C -0.12 -1.64 6.43 32.21 0.21 -1.43 16 20 C -0.11 -1.70 6.45 32.21 0.21 -1.49 16 21 C 0.05 0.87 5.12 46.15 0.24 1.11 16 22 H 0.13 2.00 8.14 -2.39 -0.02 1.98 16 23 N -0.65 -10.66 7.71 -433.03 -3.34 -14.00 16 24 H 0.27 15.20 8.31 -92.70 -0.77 14.43 16 25 H 0.01 0.51 7.20 -2.39 -0.02 0.49 16 26 H 0.01 0.41 7.57 -2.39 -0.02 0.40 16 27 H 0.40 14.41 8.34 -92.71 -0.77 13.63 16 28 H 0.41 8.52 8.53 -92.71 -0.79 7.73 16 29 H 0.07 1.65 7.82 -2.39 -0.02 1.63 16 30 H 0.06 1.41 8.01 -2.39 -0.02 1.39 16 31 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.07 1.00 7.82 -2.39 -0.02 0.98 16 33 H 0.07 1.09 7.85 -2.39 -0.02 1.08 16 34 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.33 5.27 8.51 -89.69 -0.76 4.51 16 Total: -1.00 -69.05 285.06 -3.59 -72.64 By element: Atomic # 1 Polarization: 24.07 SS G_CDS: -1.26 Total: 22.81 kcal Atomic # 6 Polarization: 8.72 SS G_CDS: 3.87 Total: 12.59 kcal Atomic # 7 Polarization: -115.61 SS G_CDS: -8.02 Total: -123.63 kcal Atomic # 8 Polarization: -30.67 SS G_CDS: -0.06 Total: -30.73 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 1.88 Total: 46.33 kcal Total: -69.05 -3.59 -72.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120531934.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.086 kcal (2) G-P(sol) polarization free energy of solvation -69.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds