Wall clock time and date at job start Sun Mar 29 2020 22:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 119.99927 * 2 1 4 4 H 1.48498 * 109.47083 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47505 * 300.00320 * 3 2 1 6 6 H 1.48499 * 109.46681 * 60.00438 * 3 2 1 7 7 C 1.37878 * 120.00283 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00140 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99578 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.46886 * 180.02562 * 9 7 2 11 11 C 1.34781 * 120.00134 * 180.02562 * 10 9 7 12 12 O 1.21590 * 119.99845 * 359.97438 * 11 10 9 13 13 N 1.34773 * 119.99870 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99601 * 179.72181 * 13 11 10 15 15 H 1.09003 * 110.55038 * 326.81686 * 14 13 11 16 16 C 1.54838 * 110.61404 * 203.96010 * 14 13 11 17 17 C 1.55850 * 103.51682 * 241.49270 * 16 14 13 18 18 H 1.08999 * 115.57949 * 201.10747 * 17 16 14 19 19 C 1.55848 * 105.03324 * 72.47949 * 17 16 14 20 20 C 1.54828 * 103.52151 * 288.27147 * 19 17 16 21 21 C 1.55848 * 110.61623 * 89.68829 * 14 13 11 22 22 H 1.08998 * 115.57949 * 278.15417 * 21 14 13 23 23 N 1.50656 * 101.02817 * 327.00376 * 17 16 14 24 24 H 0.96996 * 120.00299 * 359.97438 * 1 2 3 25 25 H 1.08993 * 109.47512 * 59.99860 * 9 7 2 26 26 H 1.08999 * 109.46892 * 299.99634 * 9 7 2 27 27 H 0.97002 * 120.00119 * 359.97438 * 10 9 7 28 28 H 0.97001 * 120.00366 * 0.02562 * 13 11 10 29 29 H 1.09001 * 110.61287 * 359.97438 * 16 14 13 30 30 H 1.08998 * 110.61585 * 122.98531 * 16 14 13 31 31 H 1.09002 * 110.61502 * 46.78304 * 19 17 16 32 32 H 1.09001 * 110.61220 * 169.60619 * 19 17 16 33 33 H 1.08999 * 110.61172 * 118.50601 * 20 19 17 34 34 H 1.08998 * 110.61546 * 241.33369 * 20 19 17 35 35 H 1.00901 * 110.99517 * 170.23974 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8903 2.3963 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 7 2.2030 -3.6126 -0.0015 11 6 1.7538 -4.8834 -0.0029 12 8 0.5584 -5.1056 -0.0039 13 7 2.6296 -5.9077 -0.0032 14 6 2.1413 -7.2889 0.0014 15 1 1.2101 -7.3637 0.5630 16 6 3.2100 -8.2430 0.5889 17 6 3.5222 -9.2114 -0.5917 18 1 3.9676 -10.1661 -0.3120 19 6 4.3405 -8.3590 -1.6080 20 6 3.2863 -7.3929 -2.2016 21 6 1.9465 -7.8069 -1.4555 22 1 1.0133 -7.5159 -1.9376 23 7 2.1775 -9.2857 -1.2669 24 1 -0.4850 0.8400 0.0004 25 1 0.6247 -2.5563 -0.8919 26 1 0.6240 -2.5575 0.8880 27 1 3.1567 -3.4354 -0.0010 28 1 3.5833 -5.7305 -0.0020 29 1 4.1032 -7.6883 0.8763 30 1 2.8076 -8.7926 1.4398 31 1 5.1264 -7.8027 -1.0972 32 1 4.7648 -8.9931 -2.3865 33 1 3.5496 -6.3576 -1.9849 34 1 3.1877 -7.5457 -3.2763 35 1 2.2451 -9.7576 -2.1561 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001120616919.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:33 Heat of formation + Delta-G solvation = -12.655363 kcal Electronic energy + Delta-G solvation = -17218.422726 eV Core-core repulsion = 14444.538257 eV Total energy + Delta-G solvation = -2773.884468 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.67447 -38.64692 -34.25067 -33.67986 -32.24510 -30.13999 -29.64273 -28.51516 -26.68486 -22.83189 -22.03649 -20.94272 -20.08050 -19.30827 -18.13640 -17.02946 -15.94317 -15.83611 -15.20044 -14.85317 -14.34011 -14.11794 -13.36220 -13.11481 -13.01435 -12.41600 -12.14973 -11.97255 -11.87393 -11.83092 -11.67269 -11.17381 -10.94989 -10.91107 -10.89292 -10.29766 -10.18631 -9.36551 -9.33500 -8.99467 -8.73157 -8.61387 -7.73618 -6.14062 -4.20488 3.24689 3.29240 3.33231 3.38130 3.94520 4.03771 4.34469 4.41931 4.56967 4.73435 4.93233 5.07008 5.11768 5.15596 5.22135 5.26171 5.37970 5.61789 5.64888 5.79208 5.89012 5.99573 6.11057 6.15723 6.32468 6.95873 7.12239 7.15491 7.54256 7.57746 7.59610 7.93211 8.06572 8.78729 8.97218 9.36303 9.50688 10.96272 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.052528 B = 0.004674 C = 0.004533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.925544 B = 5989.075652 C = 6174.862409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.903 3.097 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.541 4.541 8 H 0.062 0.938 9 C 0.267 3.733 10 N -0.730 5.730 11 C 0.692 3.308 12 O -0.599 6.599 13 N -0.747 5.747 14 C 0.170 3.830 15 H 0.096 0.904 16 C -0.121 4.121 17 C 0.047 3.953 18 H 0.112 0.888 19 C -0.154 4.154 20 C -0.155 4.155 21 C 0.040 3.960 22 H 0.119 0.881 23 N -0.648 5.648 24 H 0.265 0.735 25 H 0.024 0.976 26 H 0.024 0.976 27 H 0.385 0.615 28 H 0.389 0.611 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.079 0.921 34 H 0.061 0.939 35 H 0.331 0.669 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.460 -16.405 -2.197 19.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.579 4.579 8 H 0.080 0.920 9 C 0.145 3.855 10 N -0.382 5.382 11 C 0.392 3.608 12 O -0.478 6.478 13 N -0.404 5.404 14 C 0.063 3.937 15 H 0.114 0.886 16 C -0.160 4.160 17 C -0.063 4.063 18 H 0.130 0.870 19 C -0.193 4.193 20 C -0.195 4.195 21 C -0.071 4.071 22 H 0.137 0.863 23 N -0.274 5.274 24 H 0.075 0.925 25 H 0.042 0.958 26 H 0.042 0.958 27 H 0.217 0.783 28 H 0.223 0.777 29 H 0.092 0.908 30 H 0.098 0.902 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.098 0.902 34 H 0.080 0.920 35 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 8.637 -16.617 -1.577 18.794 hybrid contribution 2.025 1.446 -0.854 2.631 sum 10.661 -15.171 -2.432 18.701 Atomic orbital electron populations 1.69986 1.06087 1.27134 1.49074 1.24943 0.94897 0.99384 0.94801 0.86368 0.79785 0.83042 0.77729 1.19702 1.20831 1.20808 1.21266 0.93267 0.90465 1.52939 0.91953 1.18974 0.87793 0.81094 0.97594 1.45726 1.10691 1.04487 1.77316 1.16194 0.85303 0.81065 0.78273 1.90875 1.14211 1.84180 1.58494 1.45299 1.08481 1.04873 1.81753 1.21535 0.97913 0.79422 0.94848 0.88566 1.22923 0.98693 0.96694 0.97647 1.24287 0.89479 0.97721 0.94796 0.87002 1.23329 0.98492 0.98437 0.99076 1.23782 0.95457 1.00703 0.99540 1.25297 0.97496 0.87465 0.96859 0.86341 1.65935 1.25895 1.10753 1.24827 0.92526 0.95768 0.95758 0.78290 0.77698 0.90763 0.90245 0.91087 0.91824 0.90220 0.91987 0.85485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.30 13.29 55.43 0.74 -25.57 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 7 C -0.54 -14.80 9.28 -34.44 -0.32 -15.11 16 8 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 9 C 0.27 7.20 5.43 -5.19 -0.03 7.17 16 10 N -0.73 -15.66 5.55 -66.41 -0.37 -16.03 16 11 C 0.69 14.27 8.57 -86.92 -0.74 13.53 16 12 O -0.60 -15.06 16.01 5.29 0.08 -14.97 16 13 N -0.75 -11.06 3.72 -56.25 -0.21 -11.27 16 14 C 0.17 2.32 3.12 -65.44 -0.20 2.11 16 15 H 0.10 1.59 7.59 -51.93 -0.39 1.19 16 16 C -0.12 -1.23 6.19 -24.24 -0.15 -1.38 16 17 C 0.05 0.42 5.54 -62.55 -0.35 0.07 16 18 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 19 C -0.15 -1.32 6.35 -24.25 -0.15 -1.48 16 20 C -0.16 -1.69 6.31 -22.53 -0.14 -1.83 16 21 C 0.04 0.51 5.62 -60.72 -0.34 0.17 16 22 H 0.12 1.71 8.14 -51.93 -0.42 1.29 16 23 N -0.65 -6.90 7.70 -86.39 -0.67 -7.56 16 24 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 25 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.02 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.39 7.05 8.34 -40.82 -0.34 6.71 16 28 H 0.39 4.65 7.89 -40.82 -0.32 4.33 16 29 H 0.07 0.66 7.36 -51.93 -0.38 0.28 16 30 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.07 0.57 7.81 -51.93 -0.41 0.16 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.96 6.41 -51.93 -0.33 0.62 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.33 3.04 8.69 -39.29 -0.34 2.69 16 LS Contribution 285.96 15.07 4.31 4.31 Total: -1.00 -32.33 285.96 -8.67 -41.00 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -5.01 Total: 9.25 kcal Atomic # 6 Polarization: 7.45 SS G_CDS: -2.53 Total: 4.92 kcal Atomic # 7 Polarization: -59.92 SS G_CDS: -0.51 Total: -60.43 kcal Atomic # 8 Polarization: -15.06 SS G_CDS: 0.08 Total: -14.97 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -32.33 -8.67 -41.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120616919.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.347 kcal (2) G-P(sol) polarization free energy of solvation -32.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds