Wall clock time and date at job start Sun Mar 29 2020 22:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 119.99927 * 2 1 4 4 H 1.48498 * 109.47083 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47505 * 300.00320 * 3 2 1 6 6 H 1.48499 * 109.46681 * 60.00438 * 3 2 1 7 7 C 1.37878 * 120.00283 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00140 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99578 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.46886 * 180.02562 * 9 7 2 11 11 C 1.34781 * 120.00134 * 180.02562 * 10 9 7 12 12 O 1.21590 * 119.99845 * 359.97438 * 11 10 9 13 13 N 1.34773 * 119.99870 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99601 * 179.72181 * 13 11 10 15 15 H 1.09003 * 110.55038 * 326.81686 * 14 13 11 16 16 C 1.54838 * 110.61404 * 203.96010 * 14 13 11 17 17 C 1.55850 * 103.51682 * 241.49270 * 16 14 13 18 18 H 1.08999 * 115.57949 * 201.10747 * 17 16 14 19 19 C 1.55848 * 105.03324 * 72.47949 * 17 16 14 20 20 C 1.54828 * 103.52151 * 288.27147 * 19 17 16 21 21 C 1.55848 * 110.61623 * 89.68829 * 14 13 11 22 22 H 1.08998 * 115.57949 * 278.15417 * 21 14 13 23 23 N 1.50656 * 101.02817 * 327.00376 * 17 16 14 24 24 H 0.96996 * 120.00299 * 359.97438 * 1 2 3 25 25 H 1.08993 * 109.47512 * 59.99860 * 9 7 2 26 26 H 1.08999 * 109.46892 * 299.99634 * 9 7 2 27 27 H 0.97002 * 120.00119 * 359.97438 * 10 9 7 28 28 H 0.97001 * 120.00366 * 0.02562 * 13 11 10 29 29 H 1.09001 * 110.61287 * 359.97438 * 16 14 13 30 30 H 1.08998 * 110.61585 * 122.98531 * 16 14 13 31 31 H 1.09002 * 110.61502 * 46.78304 * 19 17 16 32 32 H 1.09001 * 110.61220 * 169.60619 * 19 17 16 33 33 H 1.08999 * 110.61172 * 118.50601 * 20 19 17 34 34 H 1.08998 * 110.61546 * 241.33369 * 20 19 17 35 35 H 1.00901 * 110.99517 * 170.23974 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8903 2.3963 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 7 2.2030 -3.6126 -0.0015 11 6 1.7538 -4.8834 -0.0029 12 8 0.5584 -5.1056 -0.0039 13 7 2.6296 -5.9077 -0.0032 14 6 2.1413 -7.2889 0.0014 15 1 1.2101 -7.3637 0.5630 16 6 3.2100 -8.2430 0.5889 17 6 3.5222 -9.2114 -0.5917 18 1 3.9676 -10.1661 -0.3120 19 6 4.3405 -8.3590 -1.6080 20 6 3.2863 -7.3929 -2.2016 21 6 1.9465 -7.8069 -1.4555 22 1 1.0133 -7.5159 -1.9376 23 7 2.1775 -9.2857 -1.2669 24 1 -0.4850 0.8400 0.0004 25 1 0.6247 -2.5563 -0.8919 26 1 0.6240 -2.5575 0.8880 27 1 3.1567 -3.4354 -0.0010 28 1 3.5833 -5.7305 -0.0020 29 1 4.1032 -7.6883 0.8763 30 1 2.8076 -8.7926 1.4398 31 1 5.1264 -7.8027 -1.0972 32 1 4.7648 -8.9931 -2.3865 33 1 3.5496 -6.3576 -1.9849 34 1 3.1877 -7.5457 -3.2763 35 1 2.2451 -9.7576 -2.1561 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120616919.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:33 Heat of formation + Delta-G solvation = -38.704937 kcal Electronic energy + Delta-G solvation = -17219.552320 eV Core-core repulsion = 14444.538257 eV Total energy + Delta-G solvation = -2775.014063 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.75336 -40.20610 -36.17167 -35.19977 -34.25785 -31.06217 -30.47571 -29.88372 -28.45005 -24.77215 -23.05191 -22.26024 -21.38884 -20.29434 -19.84131 -18.21160 -17.78610 -17.16254 -16.63457 -16.45988 -15.71312 -15.56954 -14.99322 -14.40721 -14.23602 -14.03832 -13.78878 -13.33930 -13.01552 -12.84907 -12.75453 -12.68308 -12.60275 -12.21038 -12.01712 -11.85757 -11.44132 -11.23870 -11.05928 -10.81135 -10.21437 -9.78910 -9.54726 -8.27925 -6.44435 1.43877 1.45539 1.58645 1.87898 2.25038 2.39920 3.07260 3.13722 3.55031 3.59350 3.69947 3.86011 4.09763 4.26964 4.27685 4.35378 4.53824 4.71063 4.88828 5.02016 5.02970 5.09030 5.14723 5.16924 5.25342 5.27696 5.42771 5.50016 5.66450 5.74538 5.85964 6.26941 6.36557 6.67886 7.25179 7.33372 7.74921 8.84809 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.052528 B = 0.004674 C = 0.004533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.925544 B = 5989.075652 C = 6174.862409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.987 3.013 4 H -0.252 1.252 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.553 4.553 8 H 0.084 0.916 9 C 0.285 3.715 10 N -0.723 5.723 11 C 0.691 3.309 12 O -0.649 6.649 13 N -0.718 5.718 14 C 0.161 3.839 15 H 0.059 0.941 16 C -0.114 4.114 17 C 0.056 3.944 18 H 0.141 0.859 19 C -0.145 4.145 20 C -0.152 4.152 21 C 0.031 3.969 22 H 0.088 0.912 23 N -0.655 5.655 24 H 0.269 0.731 25 H -0.016 1.016 26 H -0.016 1.016 27 H 0.404 0.596 28 H 0.409 0.591 29 H 0.095 0.905 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.995 -16.999 -2.256 22.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.810 3.190 4 H -0.176 1.176 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.591 4.591 8 H 0.102 0.898 9 C 0.162 3.838 10 N -0.376 5.376 11 C 0.390 3.610 12 O -0.532 6.532 13 N -0.375 5.375 14 C 0.055 3.945 15 H 0.077 0.923 16 C -0.152 4.152 17 C -0.053 4.053 18 H 0.159 0.841 19 C -0.184 4.184 20 C -0.192 4.192 21 C -0.081 4.081 22 H 0.106 0.894 23 N -0.282 5.282 24 H 0.077 0.923 25 H 0.002 0.998 26 H 0.002 0.998 27 H 0.239 0.761 28 H 0.246 0.754 29 H 0.113 0.887 30 H 0.101 0.899 31 H 0.103 0.897 32 H 0.099 0.901 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 12.261 -17.274 -1.642 21.247 hybrid contribution 0.864 1.522 -0.841 1.942 sum 13.124 -15.752 -2.483 20.653 Atomic orbital electron populations 1.70151 1.08331 1.28500 1.50068 1.26073 0.95761 1.03902 0.93876 0.85083 0.79059 0.77223 0.77650 1.17586 1.20490 1.20464 1.21628 0.94308 0.90417 1.52742 0.89774 1.18400 0.88133 0.83440 0.93849 1.45288 1.10811 1.03803 1.77741 1.16365 0.85196 0.81634 0.77766 1.90843 1.16881 1.84917 1.60534 1.45010 1.08636 1.04123 1.79756 1.21678 0.98048 0.79088 0.95732 0.92272 1.22936 0.97962 0.96104 0.98220 1.24433 0.88470 0.98693 0.93746 0.84139 1.23301 0.97758 0.97972 0.99349 1.23748 0.94981 1.00702 0.99733 1.25102 0.97523 0.89312 0.96133 0.89376 1.65898 1.27634 1.09012 1.25682 0.92256 0.99785 0.99804 0.76055 0.75369 0.88680 0.89854 0.89660 0.90090 0.91470 0.91675 0.84354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.87 13.29 21.45 0.28 -56.58 16 2 C 0.00 0.19 5.46 84.66 0.46 0.65 16 3 Si 0.99 42.47 29.54 68.60 2.03 44.50 16 4 H -0.25 -9.98 7.11 99.48 0.71 -9.27 16 5 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 6 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 7 C -0.55 -30.38 9.28 25.60 0.24 -30.14 16 8 H 0.08 4.16 7.60 -2.91 -0.02 4.14 16 9 C 0.29 16.08 5.43 85.63 0.46 16.55 16 10 N -0.72 -31.57 5.55 -482.29 -2.68 -34.24 16 11 C 0.69 29.38 8.57 179.05 1.53 30.92 16 12 O -0.65 -34.66 16.01 -4.00 -0.06 -34.72 16 13 N -0.72 -20.99 3.72 -450.13 -1.68 -22.67 16 14 C 0.16 4.38 3.12 46.60 0.15 4.53 16 15 H 0.06 2.06 7.59 -2.39 -0.02 2.05 16 16 C -0.11 -2.01 6.19 32.21 0.20 -1.81 16 17 C 0.06 0.80 5.54 46.15 0.26 1.06 16 18 H 0.14 1.33 8.14 -2.39 -0.02 1.31 16 19 C -0.15 -1.93 6.35 32.20 0.20 -1.72 16 20 C -0.15 -3.05 6.31 33.32 0.21 -2.84 16 21 C 0.03 0.79 5.62 47.22 0.27 1.06 16 22 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 23 N -0.65 -12.93 7.70 -427.24 -3.29 -16.22 16 24 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 25 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 26 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 27 H 0.40 14.40 8.34 -92.71 -0.77 13.62 16 28 H 0.41 8.91 7.89 -92.71 -0.73 8.18 16 29 H 0.09 1.32 7.36 -2.39 -0.02 1.30 16 30 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.08 0.95 7.81 -2.39 -0.02 0.93 16 32 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.07 1.50 6.41 -2.39 -0.02 1.49 16 34 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.34 5.61 8.69 -89.69 -0.78 4.83 16 Total: -1.00 -74.10 285.96 -2.58 -76.68 By element: Atomic # 1 Polarization: 26.18 SS G_CDS: -1.16 Total: 25.02 kcal Atomic # 6 Polarization: 14.26 SS G_CDS: 3.98 Total: 18.24 kcal Atomic # 7 Polarization: -122.36 SS G_CDS: -7.36 Total: -129.72 kcal Atomic # 8 Polarization: -34.66 SS G_CDS: -0.06 Total: -34.72 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Total: -74.10 -2.58 -76.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120616919.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.979 kcal (2) G-P(sol) polarization free energy of solvation -74.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds