Wall clock time and date at job start Sun Mar 29 2020 22:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.69233 * 2 1 4 4 C 1.53214 * 109.58042 * 239.66464 * 2 1 3 5 5 N 1.47318 * 108.80122 * 240.20825 * 4 2 1 6 6 C 1.47306 * 110.07959 * 299.13835 * 5 4 2 7 7 C 1.53208 * 108.80698 * 60.85177 * 6 5 4 8 8 N 1.47307 * 109.58510 * 120.34634 * 2 1 3 9 9 C 1.47551 * 110.23645 * 58.97841 * 8 2 1 10 10 C 1.47274 * 110.15311 * 60.80761 * 5 4 2 11 11 H 1.08994 * 109.58476 * 179.24666 * 10 5 4 12 12 C 1.50708 * 109.58320 * 58.97467 * 10 5 4 13 13 O 1.21297 * 119.99782 * 3.79145 * 12 10 5 14 14 N 1.34773 * 119.99957 * 183.79616 * 12 10 5 15 15 C 1.37097 * 120.00148 * 180.02562 * 14 12 10 16 16 H 1.08009 * 119.99569 * 359.97438 * 15 14 12 17 17 C 1.38949 * 120.00132 * 179.97438 * 15 14 12 18 18 N 1.31405 * 120.00191 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99683 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47160 * 179.97438 * 19 17 15 21 21 H 1.48497 * 109.47480 * 300.00130 * 19 17 15 22 22 H 1.48504 * 109.47242 * 60.00640 * 19 17 15 23 23 H 1.08999 * 109.46546 * 299.65650 * 1 2 3 24 24 H 1.08997 * 109.47157 * 59.65480 * 1 2 3 25 25 H 1.08998 * 109.47016 * 179.65580 * 1 2 3 26 26 H 1.08997 * 109.58437 * 120.41834 * 4 2 1 27 27 H 1.09002 * 109.58365 * 0.02562 * 4 2 1 28 28 H 1.09005 * 109.58235 * 180.64820 * 6 5 4 29 29 H 1.09002 * 109.58128 * 301.05193 * 6 5 4 30 30 H 1.08997 * 109.58080 * 119.80394 * 7 6 5 31 31 H 1.09003 * 109.58323 * 240.07810 * 7 6 5 32 32 H 1.08997 * 109.62148 * 300.99005 * 9 8 2 33 33 H 1.09000 * 109.69830 * 180.48597 * 9 8 2 34 34 H 0.96997 * 119.99972 * 359.97438 * 14 12 10 35 35 H 0.96997 * 120.00051 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8973 1.0263 0.0000 4 6 2.0435 -0.7291 -1.2459 5 7 2.8554 -1.8823 -0.8203 6 6 4.0101 -1.4234 -0.0292 7 6 3.4968 -0.6941 1.2166 8 7 2.0238 -0.7012 1.1977 9 6 1.5227 -2.0888 1.2196 10 6 2.0360 -2.8151 -0.0282 11 1 2.6418 -3.6706 0.2703 12 6 0.8673 -3.2874 -0.8543 13 8 0.7649 -2.9429 -2.0128 14 7 -0.0640 -4.0925 -0.3058 15 6 -1.1269 -4.5226 -1.0573 16 1 -1.2180 -4.2159 -2.0890 17 6 -2.0868 -5.3531 -0.4919 18 7 -1.9756 -5.7266 0.7630 19 14 -3.5353 -5.9385 -1.5159 20 1 -4.4089 -6.8070 -0.6866 21 1 -4.3113 -4.7653 -1.9920 22 1 -3.0369 -6.7092 -2.6833 23 1 -0.3632 0.5085 0.8931 24 1 -0.3633 0.5192 -0.8868 25 1 -0.3633 -1.0276 -0.0062 26 1 2.6558 -0.0506 -1.8399 27 1 1.1983 -1.0764 -1.8403 28 1 4.6112 -2.2816 0.2716 29 1 4.6156 -0.7426 -0.6276 30 1 3.8532 -1.2044 2.1114 31 1 3.8593 0.3339 1.2135 32 1 0.4327 -2.0844 1.2173 33 1 1.8859 -2.5965 2.1131 34 1 0.0181 -4.3682 0.6206 35 1 -2.6459 -6.3060 1.1577 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123545513.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:36:57 Heat of formation + Delta-G solvation = -1.572464 kcal Electronic energy + Delta-G solvation = -18401.414897 eV Core-core repulsion = 15628.011019 eV Total energy + Delta-G solvation = -2773.403878 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.11963 -37.69568 -34.08061 -33.22602 -32.08450 -31.61767 -30.54996 -26.86673 -25.25942 -23.49816 -23.38664 -21.78184 -19.59921 -18.07499 -17.56574 -16.93489 -16.17928 -15.77383 -14.99824 -14.28400 -13.91758 -13.79106 -13.46568 -13.14875 -12.75483 -12.71348 -12.39125 -12.16459 -11.64163 -11.58896 -11.51983 -11.10156 -11.03880 -10.64804 -10.46835 -10.37828 -10.24415 -10.19999 -9.53915 -9.43652 -8.31346 -7.98108 -7.33964 -6.43919 -3.85036 3.18395 3.24844 3.28826 3.83009 3.89127 4.13109 4.35969 4.78495 4.84213 5.04669 5.12381 5.24546 5.28365 5.50888 5.59482 5.65546 5.67885 5.74733 5.79649 5.96302 6.03526 6.07466 6.11805 6.27768 6.33086 6.50020 6.60100 6.91699 6.99755 7.37957 7.47229 7.53144 8.03245 8.58446 9.15020 9.50540 10.02013 10.73425 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.039955 B = 0.007173 C = 0.007132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.625336 B = 3902.504045 C = 3925.051453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.039 3.961 3 H 0.079 0.921 4 C 0.002 3.998 5 N -0.489 5.489 6 C 0.009 3.991 7 C 0.010 3.990 8 N -0.512 5.512 9 C 0.014 3.986 10 C 0.032 3.968 11 H 0.096 0.904 12 C 0.452 3.548 13 O -0.576 6.576 14 N -0.559 5.559 15 C -0.301 4.301 16 H 0.103 0.897 17 C 0.025 3.975 18 N -0.900 5.900 19 Si 0.930 3.070 20 H -0.284 1.284 21 H -0.273 1.273 22 H -0.274 1.274 23 H 0.056 0.944 24 H 0.060 0.940 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.123 0.877 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.095 0.905 33 H 0.081 0.919 34 H 0.392 0.608 35 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.680 8.240 3.049 11.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.072 4.072 3 H 0.097 0.903 4 C -0.127 4.127 5 N -0.210 5.210 6 C -0.121 4.121 7 C -0.120 4.120 8 N -0.234 5.234 9 C -0.116 4.116 10 C -0.082 4.082 11 H 0.114 0.886 12 C 0.237 3.763 13 O -0.461 6.461 14 N -0.195 5.195 15 C -0.430 4.430 16 H 0.121 0.879 17 C -0.177 4.177 18 N -0.540 5.540 19 Si 0.757 3.243 20 H -0.209 1.209 21 H -0.199 1.199 22 H -0.199 1.199 23 H 0.075 0.925 24 H 0.079 0.921 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.141 0.859 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.113 0.887 33 H 0.100 0.900 34 H 0.226 0.774 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.472 8.332 2.380 11.442 hybrid contribution -0.528 -0.566 0.221 0.805 sum 6.944 7.766 2.601 10.738 Atomic orbital electron populations 1.21881 0.93521 1.03227 1.01398 1.22442 0.96798 0.97800 0.90119 0.90316 1.23366 1.00382 0.91823 0.97145 1.63572 1.07557 1.13985 1.35874 1.22944 0.94388 1.00136 0.94650 1.22890 0.88947 1.01415 0.98774 1.64001 1.07434 1.14175 1.37765 1.23092 1.02514 0.88629 0.97363 1.22263 0.95921 0.96541 0.93493 0.88618 1.19466 0.84516 0.84180 0.88151 1.90437 1.77778 1.60183 1.17659 1.41836 1.21132 1.42638 1.13871 1.19642 0.99656 1.26738 0.96989 0.87949 1.25251 0.99321 0.97040 0.96129 1.69597 1.36504 1.35759 1.12179 0.85930 0.80424 0.78723 0.79222 1.20948 1.19891 1.19896 0.92496 0.92137 0.91429 0.91433 0.85914 0.90499 0.90399 0.90410 0.90589 0.88676 0.90047 0.77429 0.91748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 8.64 37.16 0.32 -1.99 16 2 C 0.04 0.60 3.05 -67.38 -0.21 0.39 16 3 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 4 C 0.00 0.04 5.35 -3.48 -0.02 0.02 16 5 N -0.49 -8.68 5.03 -226.61 -1.14 -9.82 16 6 C 0.01 0.12 6.13 -3.49 -0.02 0.10 16 7 C 0.01 0.13 6.13 -3.49 -0.02 0.11 16 8 N -0.51 -7.84 5.25 -225.00 -1.18 -9.02 16 9 C 0.01 0.24 5.19 -3.34 -0.02 0.22 16 10 C 0.03 0.60 2.86 -68.53 -0.20 0.40 16 11 H 0.10 1.70 8.14 -51.93 -0.42 1.28 16 12 C 0.45 10.58 5.78 -10.98 -0.06 10.52 16 13 O -0.58 -15.34 13.49 5.54 0.07 -15.27 16 14 N -0.56 -13.90 4.93 -10.96 -0.05 -13.95 16 15 C -0.30 -8.23 9.68 -14.93 -0.14 -8.37 16 16 H 0.10 2.94 7.16 -52.48 -0.38 2.56 16 17 C 0.02 0.65 5.50 -17.47 -0.10 0.55 16 18 N -0.90 -24.11 13.05 55.50 0.72 -23.39 16 19 Si 0.93 20.86 29.55 -169.99 -5.02 15.83 16 20 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 21 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 22 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 23 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 24 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.07 1.31 5.54 -51.93 -0.29 1.02 16 26 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.12 2.58 4.81 -51.93 -0.25 2.33 16 28 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.09 1.78 5.45 -51.93 -0.28 1.50 16 33 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.39 9.42 7.69 -40.82 -0.31 9.10 16 35 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 271.32 15.07 4.09 4.09 Total: -1.00 -29.54 271.32 -7.85 -37.38 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: -4.87 Total: 12.20 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: -0.46 Total: 1.94 kcal Atomic # 7 Polarization: -54.53 SS G_CDS: -1.65 Total: -56.18 kcal Atomic # 8 Polarization: -15.34 SS G_CDS: 0.07 Total: -15.27 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -29.54 -7.85 -37.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123545513.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.811 kcal (2) G-P(sol) polarization free energy of solvation -29.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds