Wall clock time and date at job start Sun Mar 29 2020 22:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.69233 * 2 1 4 4 C 1.53214 * 109.58042 * 239.66464 * 2 1 3 5 5 N 1.47318 * 108.80122 * 240.20825 * 4 2 1 6 6 C 1.47306 * 110.07959 * 299.13835 * 5 4 2 7 7 C 1.53208 * 108.80698 * 60.85177 * 6 5 4 8 8 N 1.47307 * 109.58510 * 120.34634 * 2 1 3 9 9 C 1.47551 * 110.23645 * 58.97841 * 8 2 1 10 10 C 1.47274 * 110.15311 * 60.80761 * 5 4 2 11 11 H 1.08994 * 109.58476 * 179.24666 * 10 5 4 12 12 C 1.50708 * 109.58320 * 58.97467 * 10 5 4 13 13 O 1.21297 * 119.99782 * 3.79145 * 12 10 5 14 14 N 1.34773 * 119.99957 * 183.79616 * 12 10 5 15 15 C 1.37097 * 120.00148 * 180.02562 * 14 12 10 16 16 H 1.08009 * 119.99569 * 359.97438 * 15 14 12 17 17 C 1.38949 * 120.00132 * 179.97438 * 15 14 12 18 18 N 1.31405 * 120.00191 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99683 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47160 * 179.97438 * 19 17 15 21 21 H 1.48497 * 109.47480 * 300.00130 * 19 17 15 22 22 H 1.48504 * 109.47242 * 60.00640 * 19 17 15 23 23 H 1.08999 * 109.46546 * 299.65650 * 1 2 3 24 24 H 1.08997 * 109.47157 * 59.65480 * 1 2 3 25 25 H 1.08998 * 109.47016 * 179.65580 * 1 2 3 26 26 H 1.08997 * 109.58437 * 120.41834 * 4 2 1 27 27 H 1.09002 * 109.58365 * 0.02562 * 4 2 1 28 28 H 1.09005 * 109.58235 * 180.64820 * 6 5 4 29 29 H 1.09002 * 109.58128 * 301.05193 * 6 5 4 30 30 H 1.08997 * 109.58080 * 119.80394 * 7 6 5 31 31 H 1.09003 * 109.58323 * 240.07810 * 7 6 5 32 32 H 1.08997 * 109.62148 * 300.99005 * 9 8 2 33 33 H 1.09000 * 109.69830 * 180.48597 * 9 8 2 34 34 H 0.96997 * 119.99972 * 359.97438 * 14 12 10 35 35 H 0.96997 * 120.00051 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8973 1.0263 0.0000 4 6 2.0435 -0.7291 -1.2459 5 7 2.8554 -1.8823 -0.8203 6 6 4.0101 -1.4234 -0.0292 7 6 3.4968 -0.6941 1.2166 8 7 2.0238 -0.7012 1.1977 9 6 1.5227 -2.0888 1.2196 10 6 2.0360 -2.8151 -0.0282 11 1 2.6418 -3.6706 0.2703 12 6 0.8673 -3.2874 -0.8543 13 8 0.7649 -2.9429 -2.0128 14 7 -0.0640 -4.0925 -0.3058 15 6 -1.1269 -4.5226 -1.0573 16 1 -1.2180 -4.2159 -2.0890 17 6 -2.0868 -5.3531 -0.4919 18 7 -1.9756 -5.7266 0.7630 19 14 -3.5353 -5.9385 -1.5159 20 1 -4.4089 -6.8070 -0.6866 21 1 -4.3113 -4.7653 -1.9920 22 1 -3.0369 -6.7092 -2.6833 23 1 -0.3632 0.5085 0.8931 24 1 -0.3633 0.5192 -0.8868 25 1 -0.3633 -1.0276 -0.0062 26 1 2.6558 -0.0506 -1.8399 27 1 1.1983 -1.0764 -1.8403 28 1 4.6112 -2.2816 0.2716 29 1 4.6156 -0.7426 -0.6276 30 1 3.8532 -1.2044 2.1114 31 1 3.8593 0.3339 1.2135 32 1 0.4327 -2.0844 1.2173 33 1 1.8859 -2.5965 2.1131 34 1 0.0181 -4.3682 0.6206 35 1 -2.6459 -6.3060 1.1577 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123545513.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:36:56 Heat of formation + Delta-G solvation = -25.786577 kcal Electronic energy + Delta-G solvation = -18402.464900 eV Core-core repulsion = 15628.011019 eV Total energy + Delta-G solvation = -2774.453880 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.46523 -39.52568 -36.04488 -34.53257 -33.65974 -33.12401 -32.12129 -28.17013 -27.12365 -24.92573 -24.76927 -22.99529 -21.32575 -20.02778 -18.98215 -18.35371 -17.54861 -17.21883 -16.69730 -16.01435 -15.71390 -15.47904 -14.82073 -14.38220 -14.19838 -13.97905 -13.91115 -13.48684 -13.38122 -13.19508 -12.84755 -12.79653 -12.44925 -12.37624 -12.14038 -12.04983 -11.66215 -11.42425 -11.35446 -10.77073 -10.17587 -9.97753 -8.64520 -8.46707 -5.95608 1.38267 1.40690 1.51261 2.01077 2.26715 2.63892 2.97421 3.17088 3.29601 3.71432 3.80332 3.88424 3.93890 4.19943 4.35391 4.37508 4.43316 4.50116 4.56941 4.70793 4.77592 4.84872 4.87750 4.91257 5.05745 5.14555 5.24051 5.40209 5.58543 5.78183 5.95625 6.10573 6.27385 6.58957 7.11553 7.53773 8.09301 8.70049 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.039955 B = 0.007173 C = 0.007132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.625336 B = 3902.504045 C = 3925.051453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.044 3.956 3 H 0.107 0.893 4 C 0.004 3.996 5 N -0.512 5.512 6 C 0.010 3.990 7 C 0.012 3.988 8 N -0.512 5.512 9 C 0.023 3.977 10 C 0.041 3.959 11 H 0.108 0.892 12 C 0.452 3.548 13 O -0.613 6.613 14 N -0.567 5.567 15 C -0.332 4.332 16 H 0.078 0.922 17 C -0.010 4.010 18 N -0.918 5.918 19 Si 0.991 3.009 20 H -0.270 1.270 21 H -0.272 1.272 22 H -0.273 1.273 23 H 0.068 0.932 24 H 0.064 0.936 25 H 0.027 0.973 26 H 0.085 0.915 27 H 0.079 0.921 28 H 0.088 0.912 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.099 0.901 32 H 0.068 0.932 33 H 0.104 0.896 34 H 0.395 0.605 35 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.877 9.102 4.132 13.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.066 4.066 3 H 0.125 0.875 4 C -0.125 4.125 5 N -0.234 5.234 6 C -0.119 4.119 7 C -0.117 4.117 8 N -0.233 5.233 9 C -0.108 4.108 10 C -0.073 4.073 11 H 0.126 0.874 12 C 0.239 3.761 13 O -0.499 6.499 14 N -0.203 5.203 15 C -0.462 4.462 16 H 0.096 0.904 17 C -0.210 4.210 18 N -0.559 5.559 19 Si 0.814 3.186 20 H -0.194 1.194 21 H -0.197 1.197 22 H -0.198 1.198 23 H 0.087 0.913 24 H 0.083 0.917 25 H 0.047 0.953 26 H 0.104 0.896 27 H 0.097 0.903 28 H 0.107 0.893 29 H 0.113 0.887 30 H 0.113 0.887 31 H 0.117 0.883 32 H 0.087 0.913 33 H 0.122 0.878 34 H 0.229 0.771 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 8.691 9.202 3.488 13.129 hybrid contribution -0.837 -0.785 -0.149 1.157 sum 7.855 8.417 3.339 11.987 Atomic orbital electron populations 1.21821 0.94690 1.00838 1.02203 1.22430 0.95871 0.98919 0.89376 0.87512 1.23213 0.99358 0.92145 0.97814 1.63518 1.08378 1.14316 1.37181 1.23076 0.92806 1.01136 0.94869 1.23028 0.86783 1.02988 0.98922 1.64035 1.09382 1.12732 1.37195 1.22958 1.01075 0.89748 0.97016 1.22132 0.94119 0.97590 0.93457 0.87439 1.20369 0.85070 0.82567 0.88083 1.90420 1.78840 1.61004 1.19631 1.41852 1.21309 1.43338 1.13814 1.19590 1.01598 1.28424 0.96568 0.90384 1.25997 1.01229 0.96537 0.97237 1.69659 1.37305 1.35843 1.13049 0.85028 0.77394 0.78285 0.77876 1.19413 1.19732 1.19809 0.91260 0.91726 0.95339 0.89636 0.90276 0.89321 0.88670 0.88653 0.88303 0.91308 0.87808 0.77130 0.91250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.48 8.64 71.98 0.62 -3.85 16 2 C 0.04 1.29 3.05 44.91 0.14 1.42 16 3 H 0.11 2.57 8.14 -2.38 -0.02 2.56 16 4 C 0.00 0.14 5.35 86.29 0.46 0.61 16 5 N -0.51 -17.49 5.03 -870.87 -4.38 -21.87 16 6 C 0.01 0.25 6.13 86.30 0.53 0.77 16 7 C 0.01 0.26 6.13 86.29 0.53 0.79 16 8 N -0.51 -14.30 5.25 -865.76 -4.54 -18.84 16 9 C 0.02 0.73 5.19 86.26 0.45 1.18 16 10 C 0.04 1.51 2.86 44.18 0.13 1.64 16 11 H 0.11 3.69 8.14 -2.39 -0.02 3.68 16 12 C 0.45 21.90 5.78 87.66 0.51 22.41 16 13 O -0.61 -34.16 13.49 -3.08 -0.04 -34.20 16 14 N -0.57 -29.27 4.93 -306.97 -1.51 -30.78 16 15 C -0.33 -18.90 9.68 84.04 0.81 -18.08 16 16 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 17 C -0.01 -0.53 5.50 84.93 0.47 -0.06 16 18 N -0.92 -49.51 13.05 21.66 0.28 -49.22 16 19 Si 0.99 43.08 29.55 68.60 2.03 45.11 16 20 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 21 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 22 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 23 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 24 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 25 H 0.03 1.13 5.54 -2.39 -0.01 1.12 16 26 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 27 H 0.08 3.44 4.81 -2.39 -0.01 3.43 16 28 H 0.09 1.91 8.14 -2.38 -0.02 1.89 16 29 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.07 2.62 5.45 -2.39 -0.01 2.61 16 33 H 0.10 2.88 8.14 -2.39 -0.02 2.86 16 34 H 0.39 19.56 7.69 -92.71 -0.71 18.85 16 35 H 0.28 14.07 8.31 -92.71 -0.77 13.30 16 Total: -1.00 -65.38 271.32 -3.14 -68.52 By element: Atomic # 1 Polarization: 34.08 SS G_CDS: 0.38 Total: 34.46 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: 4.64 Total: 6.83 kcal Atomic # 7 Polarization: -110.56 SS G_CDS: -10.15 Total: -120.71 kcal Atomic # 8 Polarization: -34.16 SS G_CDS: -0.04 Total: -34.20 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -65.38 -3.14 -68.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123545513.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.737 kcal (2) G-P(sol) polarization free energy of solvation -65.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds