Wall clock time and date at job start Sun Mar 29 2020 22:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.58285 * 2 1 4 4 C 1.53204 * 109.58717 * 120.41448 * 2 1 3 5 5 N 1.47313 * 108.80670 * 119.79695 * 4 2 1 6 6 C 1.47308 * 110.07785 * 299.14418 * 5 4 2 7 7 C 1.53212 * 108.80569 * 60.85360 * 6 5 4 8 8 N 1.47311 * 108.80031 * 0.02562 * 7 6 5 9 9 C 1.47268 * 110.15877 * 60.81218 * 8 7 6 10 10 C 1.47277 * 110.15432 * 60.80793 * 5 4 2 11 11 H 1.09004 * 109.68767 * 59.04926 * 10 5 4 12 12 C 1.50700 * 109.58186 * 179.38830 * 10 5 4 13 13 O 1.21292 * 120.00149 * 355.90169 * 12 10 5 14 14 N 1.34774 * 119.99896 * 176.17440 * 12 10 5 15 15 C 1.37098 * 119.99941 * 179.72199 * 14 12 10 16 16 H 1.07998 * 120.00113 * 0.02562 * 15 14 12 17 17 C 1.38948 * 119.99764 * 179.97438 * 15 14 12 18 18 N 1.31414 * 120.00177 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99745 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47233 * 0.02562 * 19 17 15 21 21 H 1.48509 * 109.47020 * 120.00396 * 19 17 15 22 22 H 1.48496 * 109.47073 * 240.00112 * 19 17 15 23 23 H 1.09001 * 109.47029 * 180.27404 * 1 2 3 24 24 H 1.09009 * 109.46917 * 300.26505 * 1 2 3 25 25 H 1.08995 * 109.47619 * 60.26647 * 1 2 3 26 26 H 1.09003 * 109.58189 * 239.59521 * 4 2 1 27 27 H 1.09006 * 109.57926 * 359.86610 * 4 2 1 28 28 H 1.09000 * 109.58480 * 180.64776 * 6 5 4 29 29 H 1.08993 * 109.58265 * 300.91915 * 6 5 4 30 30 H 1.09002 * 109.58079 * 240.20511 * 7 6 5 31 31 H 1.09001 * 109.58271 * 119.79816 * 7 6 5 32 32 H 1.08998 * 109.58167 * 179.38950 * 9 8 7 33 33 H 1.08996 * 109.58183 * 58.97704 * 9 8 7 34 34 H 0.97006 * 119.99925 * 359.73174 * 14 12 10 35 35 H 0.97006 * 119.99871 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0436 -0.7307 1.2448 5 7 2.8556 -1.8832 0.8176 6 6 2.0343 -2.8147 0.0253 7 6 1.5206 -2.0840 -1.2195 8 7 2.0241 -0.6997 -1.1990 9 6 3.4967 -0.6949 -1.2196 10 6 4.0099 -1.4251 0.0260 11 1 4.6185 -0.7459 0.6231 12 6 4.8393 -2.6121 -0.3913 13 8 4.5473 -3.7231 -0.0017 14 7 5.9089 -2.4386 -1.1927 15 6 6.6668 -3.5178 -1.5677 16 1 6.4065 -4.5070 -1.2211 17 6 7.7691 -3.3389 -2.3944 18 7 8.0855 -2.1353 -2.8165 19 14 8.8013 -4.8095 -2.9059 20 1 8.2386 -6.0436 -2.3013 21 1 8.7878 -4.9331 -4.3857 22 1 10.1979 -4.6208 -2.4377 23 1 -0.3633 -1.0277 0.0049 24 1 -0.3633 0.5180 0.8877 25 1 -0.3634 0.5096 -0.8923 26 1 2.6557 -0.0529 1.8397 27 1 1.1984 -1.0772 1.8397 28 1 2.6396 -3.6694 -0.2766 29 1 1.1907 -3.1579 0.6241 30 1 0.4306 -2.0768 -1.2151 31 1 1.8810 -2.5902 -2.1150 32 1 3.8587 0.3331 -1.2152 33 1 3.8511 -1.2054 -2.1151 34 1 6.1425 -1.5501 -1.5042 35 1 8.8549 -2.0106 -3.3940 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123545514.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:36:58 Heat of formation + Delta-G solvation = -2.079867 kcal Electronic energy + Delta-G solvation = -18165.044883 eV Core-core repulsion = 15391.619003 eV Total energy + Delta-G solvation = -2773.425880 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.11549 -37.79131 -34.12737 -33.07223 -32.33408 -31.49727 -30.52844 -27.39247 -24.94441 -23.58589 -23.12752 -22.10661 -19.60321 -18.10563 -17.42408 -17.06506 -16.32190 -15.77697 -14.98040 -14.25977 -14.02603 -13.86517 -13.48867 -12.89782 -12.83857 -12.72662 -12.51903 -12.29286 -11.95514 -11.58174 -11.47398 -11.26288 -11.07772 -10.86674 -10.41802 -10.34366 -10.24535 -10.16486 -9.55054 -9.45610 -8.32492 -7.98128 -7.34548 -6.44217 -3.85204 3.14833 3.25991 3.32945 3.82458 3.88319 4.12912 4.35159 4.71752 4.81679 4.95676 5.14582 5.26189 5.30906 5.32704 5.52888 5.55460 5.58916 5.74605 5.79818 5.88465 5.92813 6.08071 6.09189 6.09886 6.17999 6.29850 6.53647 6.88202 6.98663 7.37924 7.45729 7.53328 8.03635 8.58279 9.15090 9.50618 10.01887 10.73296 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.049996 B = 0.006431 C = 0.006207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.908415 B = 4352.995820 C = 4510.096160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.033 3.967 3 H 0.084 0.916 4 C 0.014 3.986 5 N -0.489 5.489 6 C 0.001 3.999 7 C 0.008 3.992 8 N -0.511 5.511 9 C 0.019 3.981 10 C 0.032 3.968 11 H 0.097 0.903 12 C 0.451 3.549 13 O -0.577 6.577 14 N -0.559 5.559 15 C -0.300 4.300 16 H 0.104 0.896 17 C 0.024 3.976 18 N -0.900 5.900 19 Si 0.929 3.071 20 H -0.268 1.268 21 H -0.281 1.281 22 H -0.281 1.281 23 H 0.056 0.944 24 H 0.059 0.941 25 H 0.060 0.940 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.119 0.881 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.392 0.608 35 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.231 5.839 3.323 13.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.077 4.077 3 H 0.102 0.898 4 C -0.116 4.116 5 N -0.209 5.209 6 C -0.129 4.129 7 C -0.122 4.122 8 N -0.233 5.233 9 C -0.112 4.112 10 C -0.082 4.082 11 H 0.115 0.885 12 C 0.236 3.764 13 O -0.461 6.461 14 N -0.195 5.195 15 C -0.429 4.429 16 H 0.122 0.878 17 C -0.178 4.178 18 N -0.541 5.541 19 Si 0.756 3.244 20 H -0.192 1.192 21 H -0.207 1.207 22 H -0.207 1.207 23 H 0.075 0.925 24 H 0.078 0.922 25 H 0.079 0.921 26 H 0.094 0.906 27 H 0.098 0.902 28 H 0.137 0.863 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.097 0.903 32 H 0.100 0.900 33 H 0.109 0.891 34 H 0.226 0.774 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.254 5.138 3.462 12.847 hybrid contribution 0.790 0.013 -0.458 0.913 sum -10.464 5.152 3.004 12.044 Atomic orbital electron populations 1.21864 0.94040 1.02006 1.01778 1.22470 0.96242 0.98584 0.90444 0.89768 1.23033 0.98161 0.93416 0.96991 1.63558 1.06813 1.12829 1.37730 1.23199 0.98055 0.98116 0.93499 1.22950 1.00380 0.89061 0.99820 1.63955 1.08043 1.14607 1.36647 1.22988 0.87856 1.01467 0.98842 1.22275 0.93536 0.97163 0.95232 0.88526 1.19491 0.83781 0.89341 0.83784 1.90437 1.71230 1.25664 1.58800 1.41849 1.24164 1.10663 1.42802 1.19748 1.06667 0.89528 1.26980 0.87844 1.25264 0.97760 0.97856 0.96942 1.69622 1.28367 1.21086 1.34993 0.85802 0.79272 0.81067 0.78216 1.19214 1.20731 1.20717 0.92456 0.92241 0.92094 0.90595 0.90185 0.86342 0.91354 0.90436 0.90342 0.89977 0.89091 0.77406 0.91854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 8.63 37.15 0.32 -1.14 16 2 C 0.03 0.42 3.05 -67.36 -0.21 0.22 16 3 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 4 C 0.01 0.20 5.80 -3.49 -0.02 0.18 16 5 N -0.49 -8.65 5.03 -226.62 -1.14 -9.79 16 6 C 0.00 0.01 5.69 -3.49 -0.02 -0.01 16 7 C 0.01 0.12 5.75 -3.49 -0.02 0.10 16 8 N -0.51 -7.77 5.24 -225.21 -1.18 -8.95 16 9 C 0.02 0.32 5.53 -3.50 -0.02 0.30 16 10 C 0.03 0.60 2.87 -68.54 -0.20 0.40 16 11 H 0.10 1.71 8.14 -51.93 -0.42 1.29 16 12 C 0.45 10.67 6.54 -10.99 -0.07 10.60 16 13 O -0.58 -15.54 13.51 5.55 0.07 -15.47 16 14 N -0.56 -14.02 4.94 -10.96 -0.05 -14.08 16 15 C -0.30 -8.28 9.68 -14.93 -0.14 -8.42 16 16 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 17 C 0.02 0.63 5.50 -17.47 -0.10 0.53 16 18 N -0.90 -24.27 13.05 55.50 0.72 -23.55 16 19 Si 0.93 20.92 29.55 -169.99 -5.02 15.90 16 20 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 21 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 22 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 23 H 0.06 0.62 6.31 -51.93 -0.33 0.29 16 24 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.08 1.00 7.61 -51.93 -0.40 0.61 16 28 H 0.12 2.50 5.35 -51.93 -0.28 2.22 16 29 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 30 H 0.08 1.03 6.17 -51.93 -0.32 0.71 16 31 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.09 1.71 7.38 -51.93 -0.38 1.33 16 34 H 0.39 9.47 7.69 -40.82 -0.31 9.16 16 35 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 272.80 15.07 4.11 4.11 Total: -1.00 -29.94 272.80 -7.87 -37.81 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -4.91 Total: 11.26 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: -0.47 Total: 2.75 kcal Atomic # 7 Polarization: -54.71 SS G_CDS: -1.65 Total: -56.37 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: 0.07 Total: -15.47 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -29.94 -7.87 -37.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123545514.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.733 kcal (2) G-P(sol) polarization free energy of solvation -29.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds