Wall clock time and date at job start Sun Mar 29 2020 22:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.58285 * 2 1 4 4 C 1.53204 * 109.58717 * 120.41448 * 2 1 3 5 5 N 1.47313 * 108.80670 * 119.79695 * 4 2 1 6 6 C 1.47308 * 110.07785 * 299.14418 * 5 4 2 7 7 C 1.53212 * 108.80569 * 60.85360 * 6 5 4 8 8 N 1.47311 * 108.80031 * 0.02562 * 7 6 5 9 9 C 1.47268 * 110.15877 * 60.81218 * 8 7 6 10 10 C 1.47277 * 110.15432 * 60.80793 * 5 4 2 11 11 H 1.09004 * 109.68767 * 59.04926 * 10 5 4 12 12 C 1.50700 * 109.58186 * 179.38830 * 10 5 4 13 13 O 1.21292 * 120.00149 * 355.90169 * 12 10 5 14 14 N 1.34774 * 119.99896 * 176.17440 * 12 10 5 15 15 C 1.37098 * 119.99941 * 179.72199 * 14 12 10 16 16 H 1.07998 * 120.00113 * 0.02562 * 15 14 12 17 17 C 1.38948 * 119.99764 * 179.97438 * 15 14 12 18 18 N 1.31414 * 120.00177 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99745 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47233 * 0.02562 * 19 17 15 21 21 H 1.48509 * 109.47020 * 120.00396 * 19 17 15 22 22 H 1.48496 * 109.47073 * 240.00112 * 19 17 15 23 23 H 1.09001 * 109.47029 * 180.27404 * 1 2 3 24 24 H 1.09009 * 109.46917 * 300.26505 * 1 2 3 25 25 H 1.08995 * 109.47619 * 60.26647 * 1 2 3 26 26 H 1.09003 * 109.58189 * 239.59521 * 4 2 1 27 27 H 1.09006 * 109.57926 * 359.86610 * 4 2 1 28 28 H 1.09000 * 109.58480 * 180.64776 * 6 5 4 29 29 H 1.08993 * 109.58265 * 300.91915 * 6 5 4 30 30 H 1.09002 * 109.58079 * 240.20511 * 7 6 5 31 31 H 1.09001 * 109.58271 * 119.79816 * 7 6 5 32 32 H 1.08998 * 109.58167 * 179.38950 * 9 8 7 33 33 H 1.08996 * 109.58183 * 58.97704 * 9 8 7 34 34 H 0.97006 * 119.99925 * 359.73174 * 14 12 10 35 35 H 0.97006 * 119.99871 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0436 -0.7307 1.2448 5 7 2.8556 -1.8832 0.8176 6 6 2.0343 -2.8147 0.0253 7 6 1.5206 -2.0840 -1.2195 8 7 2.0241 -0.6997 -1.1990 9 6 3.4967 -0.6949 -1.2196 10 6 4.0099 -1.4251 0.0260 11 1 4.6185 -0.7459 0.6231 12 6 4.8393 -2.6121 -0.3913 13 8 4.5473 -3.7231 -0.0017 14 7 5.9089 -2.4386 -1.1927 15 6 6.6668 -3.5178 -1.5677 16 1 6.4065 -4.5070 -1.2211 17 6 7.7691 -3.3389 -2.3944 18 7 8.0855 -2.1353 -2.8165 19 14 8.8013 -4.8095 -2.9059 20 1 8.2386 -6.0436 -2.3013 21 1 8.7878 -4.9331 -4.3857 22 1 10.1979 -4.6208 -2.4377 23 1 -0.3633 -1.0277 0.0049 24 1 -0.3633 0.5180 0.8877 25 1 -0.3634 0.5096 -0.8923 26 1 2.6557 -0.0529 1.8397 27 1 1.1984 -1.0772 1.8397 28 1 2.6396 -3.6694 -0.2766 29 1 1.1907 -3.1579 0.6241 30 1 0.4306 -2.0768 -1.2151 31 1 1.8810 -2.5902 -2.1150 32 1 3.8587 0.3331 -1.2152 33 1 3.8511 -1.2054 -2.1151 34 1 6.1425 -1.5501 -1.5042 35 1 8.8549 -2.0106 -3.3940 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123545514.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:36:58 Heat of formation + Delta-G solvation = -26.599114 kcal Electronic energy + Delta-G solvation = -18166.108117 eV Core-core repulsion = 15391.619003 eV Total energy + Delta-G solvation = -2774.489115 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.44912 -39.63082 -36.08588 -34.39762 -33.76960 -33.09729 -32.06808 -28.64584 -26.77435 -24.85729 -24.54666 -23.33741 -21.30136 -20.05985 -18.88916 -18.44135 -17.59230 -17.26387 -16.81966 -15.95834 -15.67264 -15.57817 -14.69176 -14.30341 -14.08958 -14.04666 -13.98263 -13.56066 -13.41455 -13.23867 -12.96011 -12.65531 -12.44086 -12.31781 -12.12489 -12.12063 -11.66908 -11.41015 -11.35854 -10.79118 -10.20869 -9.99651 -8.66237 -8.48536 -5.97693 1.34878 1.40774 1.54801 1.98482 2.26067 2.62227 2.96059 3.15218 3.27304 3.70113 3.77216 3.88804 3.94311 4.20064 4.33118 4.37023 4.42121 4.49200 4.60445 4.68537 4.78213 4.83861 4.84725 4.96524 5.06383 5.17412 5.31020 5.39047 5.56953 5.78062 5.94682 6.09031 6.24769 6.57062 7.09839 7.51685 8.07047 8.68647 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.049996 B = 0.006431 C = 0.006207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.908415 B = 4352.995820 C = 4510.096160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.033 3.967 3 H 0.099 0.901 4 C 0.016 3.984 5 N -0.511 5.511 6 C 0.005 3.995 7 C 0.014 3.986 8 N -0.511 5.511 9 C 0.027 3.973 10 C 0.042 3.958 11 H 0.111 0.889 12 C 0.448 3.552 13 O -0.614 6.614 14 N -0.566 5.566 15 C -0.333 4.333 16 H 0.078 0.922 17 C -0.010 4.010 18 N -0.918 5.918 19 Si 0.993 3.007 20 H -0.274 1.274 21 H -0.270 1.270 22 H -0.270 1.270 23 H 0.054 0.946 24 H 0.082 0.918 25 H 0.062 0.938 26 H 0.088 0.912 27 H 0.097 0.903 28 H 0.072 0.928 29 H 0.088 0.912 30 H 0.106 0.894 31 H 0.056 0.944 32 H 0.106 0.894 33 H 0.062 0.938 34 H 0.396 0.604 35 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.242 7.305 3.653 14.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.076 4.076 3 H 0.117 0.883 4 C -0.114 4.114 5 N -0.232 5.232 6 C -0.125 4.125 7 C -0.115 4.115 8 N -0.233 5.233 9 C -0.104 4.104 10 C -0.072 4.072 11 H 0.129 0.871 12 C 0.235 3.765 13 O -0.501 6.501 14 N -0.203 5.203 15 C -0.463 4.463 16 H 0.096 0.904 17 C -0.210 4.210 18 N -0.559 5.559 19 Si 0.817 3.183 20 H -0.199 1.199 21 H -0.195 1.195 22 H -0.195 1.195 23 H 0.073 0.927 24 H 0.101 0.899 25 H 0.081 0.919 26 H 0.106 0.894 27 H 0.115 0.885 28 H 0.091 0.909 29 H 0.106 0.894 30 H 0.124 0.876 31 H 0.074 0.926 32 H 0.124 0.876 33 H 0.081 0.919 34 H 0.230 0.770 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -12.278 6.640 3.793 14.465 hybrid contribution 1.048 -0.437 -0.509 1.244 sum -11.230 6.203 3.284 13.243 Atomic orbital electron populations 1.21842 0.91934 1.02257 1.03081 1.22632 0.97878 0.98609 0.88510 0.88334 1.23171 0.98326 0.92209 0.97649 1.63510 1.07332 1.14793 1.37581 1.23022 0.97738 0.96991 0.94750 1.22881 1.01832 0.88985 0.97846 1.63998 1.06704 1.14277 1.38305 1.22861 0.89135 1.01956 0.96421 1.22143 0.93650 0.94806 0.96602 0.87146 1.20446 0.83254 0.90491 0.82300 1.90422 1.72001 1.27858 1.59808 1.41871 1.24655 1.10210 1.43515 1.19679 1.08370 0.89404 1.28831 0.90410 1.26028 0.98150 1.00622 0.96226 1.69678 1.28803 1.22407 1.34992 0.84874 0.77806 0.77482 0.78182 1.19889 1.19531 1.19507 0.92703 0.89897 0.91885 0.89374 0.88517 0.90938 0.89388 0.87618 0.92573 0.87570 0.91914 0.77020 0.91207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.25 8.63 71.98 0.62 -1.63 16 2 C 0.03 0.73 3.05 44.89 0.14 0.87 16 3 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 4 C 0.02 0.38 5.80 86.29 0.50 0.88 16 5 N -0.51 -17.53 5.03 -870.89 -4.38 -21.91 16 6 C 0.00 0.16 5.69 86.30 0.49 0.65 16 7 C 0.01 0.43 5.75 86.30 0.50 0.93 16 8 N -0.51 -14.55 5.24 -866.44 -4.54 -19.10 16 9 C 0.03 0.88 5.53 86.31 0.48 1.36 16 10 C 0.04 1.56 2.87 44.18 0.13 1.68 16 11 H 0.11 3.78 8.14 -2.39 -0.02 3.76 16 12 C 0.45 21.96 6.54 87.66 0.57 22.53 16 13 O -0.61 -34.73 13.51 -3.07 -0.04 -34.77 16 14 N -0.57 -29.45 4.94 -306.99 -1.52 -30.96 16 15 C -0.33 -19.10 9.68 84.04 0.81 -18.28 16 16 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 17 C -0.01 -0.55 5.50 84.93 0.47 -0.08 16 18 N -0.92 -49.62 13.05 21.66 0.28 -49.34 16 19 Si 0.99 43.16 29.55 68.60 2.03 45.19 16 20 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 21 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 22 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 23 H 0.05 0.96 6.31 -2.39 -0.02 0.94 16 24 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 25 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.10 2.05 7.61 -2.38 -0.02 2.03 16 28 H 0.07 3.20 5.35 -2.39 -0.01 3.19 16 29 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 30 H 0.11 2.56 6.17 -2.39 -0.01 2.55 16 31 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.11 2.94 8.14 -2.39 -0.02 2.92 16 33 H 0.06 2.40 7.38 -2.39 -0.02 2.39 16 34 H 0.40 19.65 7.69 -92.70 -0.71 18.93 16 35 H 0.28 14.02 8.31 -92.70 -0.77 13.25 16 Total: -1.00 -66.19 272.80 -3.08 -69.27 By element: Atomic # 1 Polarization: 32.32 SS G_CDS: 0.38 Total: 32.71 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: 4.70 Total: 8.92 kcal Atomic # 7 Polarization: -111.15 SS G_CDS: -10.16 Total: -121.31 kcal Atomic # 8 Polarization: -34.73 SS G_CDS: -0.04 Total: -34.77 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -66.19 -3.08 -69.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123545514.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.673 kcal (2) G-P(sol) polarization free energy of solvation -66.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds