Wall clock time and date at job start Sun Mar 29 2020 22:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.58155 * 2 1 4 4 C 1.53206 * 109.58181 * 120.41171 * 2 1 3 5 5 N 1.47317 * 108.80265 * 119.80628 * 4 2 1 6 6 C 1.47314 * 110.07746 * 299.13482 * 5 4 2 7 7 C 1.53201 * 108.80440 * 60.85283 * 6 5 4 8 8 N 1.47316 * 108.80256 * 0.02562 * 7 6 5 9 9 C 1.47268 * 110.15790 * 60.80071 * 8 7 6 10 10 C 1.47266 * 110.15881 * 60.80667 * 5 4 2 11 11 H 1.08994 * 109.58382 * 179.24947 * 10 5 4 12 12 C 1.50708 * 109.58235 * 58.97480 * 10 5 4 13 13 O 1.21291 * 119.99876 * 3.74298 * 12 10 5 14 14 N 1.34773 * 120.00024 * 183.74499 * 12 10 5 15 15 C 1.37097 * 120.00278 * 179.97438 * 14 12 10 16 16 H 1.08004 * 119.99339 * 0.02562 * 15 14 12 17 17 C 1.38943 * 120.00210 * 179.97438 * 15 14 12 18 18 N 1.31412 * 120.00012 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99917 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47142 * 180.02562 * 19 17 15 21 21 H 1.48504 * 109.46937 * 299.99770 * 19 17 15 22 22 H 1.48501 * 109.47404 * 59.99715 * 19 17 15 23 23 H 1.09006 * 109.47418 * 180.27061 * 1 2 3 24 24 H 1.08995 * 109.47418 * 300.27132 * 1 2 3 25 25 H 1.08998 * 109.47138 * 60.27314 * 1 2 3 26 26 H 1.09003 * 109.58231 * 0.02562 * 4 2 1 27 27 H 1.09002 * 109.58437 * 239.60252 * 4 2 1 28 28 H 1.09005 * 109.57840 * 180.65155 * 6 5 4 29 29 H 1.09005 * 109.58361 * 301.05392 * 6 5 4 30 30 H 1.09004 * 109.58047 * 119.80350 * 7 6 5 31 31 H 1.08991 * 109.58464 * 240.21399 * 7 6 5 32 32 H 1.09008 * 109.57900 * 179.38825 * 9 8 7 33 33 H 1.08999 * 109.58380 * 58.98264 * 9 8 7 34 34 H 0.97001 * 120.00143 * 0.02562 * 14 12 10 35 35 H 0.97001 * 119.99928 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0434 -0.7307 1.2448 5 7 2.8557 -1.8831 0.8177 6 6 2.0344 -2.8148 0.0254 7 6 1.5207 -2.0842 -1.2193 8 7 2.0240 -0.6998 -1.1989 9 6 3.4965 -0.6948 -1.2192 10 6 4.0100 -1.4250 0.0263 11 1 4.6112 -2.2833 -0.2734 12 6 4.8485 -0.4849 0.8535 13 8 4.5582 -0.2732 2.0120 14 7 5.9209 0.1206 0.3060 15 6 6.6834 0.9762 1.0583 16 1 6.4249 1.1647 2.0899 17 6 7.7893 1.6000 0.4941 18 7 8.1041 1.3702 -0.7609 19 14 8.8287 2.7653 1.5194 20 1 9.9408 3.2961 0.6907 21 1 7.9858 3.8914 1.9958 22 1 9.3853 2.0353 2.6867 23 1 -0.3634 -1.0277 0.0049 24 1 -0.3634 0.5180 0.8875 25 1 -0.3633 0.5096 -0.8924 26 1 1.1983 -1.0796 1.8383 27 1 2.6555 -0.0529 1.8399 28 1 2.6399 -3.6694 -0.2764 29 1 1.1894 -3.1562 0.6234 30 1 1.8810 -2.5905 -2.1148 31 1 0.4308 -2.0769 -1.2149 32 1 3.8584 0.3334 -1.2149 33 1 3.8513 -1.2052 -2.1146 34 1 6.1528 -0.0484 -0.6206 35 1 8.8759 1.8060 -1.1550 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123545515.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:00 Heat of formation + Delta-G solvation = -1.933924 kcal Electronic energy + Delta-G solvation = -18207.635843 eV Core-core repulsion = 15434.216291 eV Total energy + Delta-G solvation = -2773.419552 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.11132 -37.76141 -34.09112 -33.21433 -32.27095 -31.34374 -30.68411 -27.20831 -25.00519 -23.54524 -23.30814 -22.00560 -19.50922 -18.09083 -17.55472 -16.75518 -16.61403 -15.65007 -15.01323 -14.28827 -14.03513 -13.77579 -13.50950 -13.10609 -12.82377 -12.65439 -12.35004 -12.16550 -11.89379 -11.80845 -11.53777 -11.19490 -10.98238 -10.70985 -10.46822 -10.37942 -10.25103 -10.21375 -9.54688 -9.43855 -8.32422 -7.98164 -7.33999 -6.43972 -3.85117 3.18533 3.24883 3.28981 3.82817 3.88999 4.12798 4.35678 4.78536 4.83416 5.03572 5.08503 5.21200 5.29300 5.42203 5.45548 5.64073 5.69510 5.70440 5.78215 5.91452 5.96504 6.01853 6.08601 6.16720 6.23167 6.30973 6.53872 6.88665 6.99982 7.38859 7.45629 7.53027 8.03257 8.58427 9.14927 9.50586 10.02010 10.73389 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.042156 B = 0.006666 C = 0.006551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.039368 B = 4199.436016 C = 4273.418636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.034 3.966 3 H 0.086 0.914 4 C 0.005 3.995 5 N -0.489 5.489 6 C 0.010 3.990 7 C 0.006 3.994 8 N -0.511 5.511 9 C 0.019 3.981 10 C 0.032 3.968 11 H 0.097 0.903 12 C 0.450 3.550 13 O -0.577 6.577 14 N -0.558 5.558 15 C -0.302 4.302 16 H 0.103 0.897 17 C 0.025 3.975 18 N -0.900 5.900 19 Si 0.931 3.069 20 H -0.284 1.284 21 H -0.274 1.274 22 H -0.273 1.273 23 H 0.053 0.947 24 H 0.060 0.940 25 H 0.058 0.942 26 H 0.070 0.930 27 H 0.119 0.881 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.393 0.607 35 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.226 -5.036 -3.076 12.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.076 4.076 3 H 0.104 0.896 4 C -0.124 4.124 5 N -0.210 5.210 6 C -0.120 4.120 7 C -0.124 4.124 8 N -0.233 5.233 9 C -0.111 4.111 10 C -0.082 4.082 11 H 0.115 0.885 12 C 0.235 3.765 13 O -0.462 6.462 14 N -0.194 5.194 15 C -0.431 4.431 16 H 0.121 0.879 17 C -0.177 4.177 18 N -0.541 5.541 19 Si 0.758 3.242 20 H -0.209 1.209 21 H -0.199 1.199 22 H -0.199 1.199 23 H 0.072 0.928 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.089 0.911 27 H 0.137 0.863 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.099 0.901 32 H 0.108 0.892 33 H 0.101 0.899 34 H 0.226 0.774 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.239 -4.809 -2.408 12.460 hybrid contribution 0.782 0.364 -0.225 0.892 sum -10.457 -4.445 -2.633 11.664 Atomic orbital electron populations 1.21867 0.94248 1.01585 1.01843 1.22487 0.95787 0.99132 0.90237 0.89585 1.23322 0.98116 0.93971 0.96995 1.63564 1.06815 1.14776 1.35843 1.22919 0.98086 0.96350 0.94636 1.22944 1.00989 0.89819 0.98687 1.63951 1.08026 1.13665 1.37620 1.22985 0.87872 1.02811 0.97480 1.22270 0.93498 0.98963 0.93470 0.88531 1.19492 0.83801 0.84986 0.88174 1.90433 1.71475 1.66558 1.17703 1.41830 1.23937 1.39759 1.13864 1.19653 1.06474 1.19970 0.97009 0.87942 1.25258 0.97735 0.98611 0.96145 1.69603 1.28326 1.43924 1.12209 0.85919 0.78996 0.80103 0.79215 1.20932 1.19895 1.19868 0.92767 0.92114 0.92246 0.91128 0.86329 0.90547 0.90455 0.90537 0.90123 0.89171 0.89901 0.77397 0.91739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 8.63 37.16 0.32 -1.35 16 2 C 0.03 0.52 3.05 -67.36 -0.21 0.32 16 3 H 0.09 1.47 8.14 -51.93 -0.42 1.04 16 4 C 0.01 0.09 5.35 -3.49 -0.02 0.07 16 5 N -0.49 -8.67 5.03 -226.62 -1.14 -9.81 16 6 C 0.01 0.14 6.13 -3.49 -0.02 0.12 16 7 C 0.01 0.07 5.75 -3.49 -0.02 0.05 16 8 N -0.51 -7.79 5.25 -225.22 -1.18 -8.97 16 9 C 0.02 0.32 5.54 -3.50 -0.02 0.30 16 10 C 0.03 0.60 2.87 -68.54 -0.20 0.40 16 11 H 0.10 1.71 8.14 -51.93 -0.42 1.29 16 12 C 0.45 10.67 6.55 -10.98 -0.07 10.60 16 13 O -0.58 -15.55 13.49 5.55 0.07 -15.48 16 14 N -0.56 -14.02 4.94 -10.96 -0.05 -14.08 16 15 C -0.30 -8.34 9.68 -14.94 -0.14 -8.48 16 16 H 0.10 2.97 7.16 -52.48 -0.38 2.59 16 17 C 0.02 0.65 5.50 -17.47 -0.10 0.56 16 18 N -0.90 -24.27 13.05 55.50 0.72 -23.55 16 19 Si 0.93 20.95 29.55 -169.99 -5.02 15.93 16 20 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 21 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 22 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 23 H 0.05 0.61 6.31 -51.93 -0.33 0.28 16 24 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.07 1.10 7.61 -51.93 -0.40 0.71 16 27 H 0.12 2.52 5.34 -51.93 -0.28 2.24 16 28 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.08 0.91 6.16 -51.93 -0.32 0.59 16 32 H 0.09 1.70 7.39 -51.92 -0.38 1.32 16 33 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.39 9.48 7.70 -40.82 -0.31 9.17 16 35 H 0.27 6.98 8.31 -40.82 -0.34 6.65 16 LS Contribution 272.80 15.07 4.11 4.11 Total: -1.00 -29.91 272.80 -7.87 -37.78 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: -4.91 Total: 11.46 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: -0.47 Total: 2.59 kcal Atomic # 7 Polarization: -54.75 SS G_CDS: -1.65 Total: -56.40 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: 0.07 Total: -15.48 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -29.91 -7.87 -37.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123545515.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.850 kcal (2) G-P(sol) polarization free energy of solvation -29.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds