Wall clock time and date at job start Sun Mar 29 2020 22:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.58155 * 2 1 4 4 C 1.53206 * 109.58181 * 120.41171 * 2 1 3 5 5 N 1.47317 * 108.80265 * 119.80628 * 4 2 1 6 6 C 1.47314 * 110.07746 * 299.13482 * 5 4 2 7 7 C 1.53201 * 108.80440 * 60.85283 * 6 5 4 8 8 N 1.47316 * 108.80256 * 0.02562 * 7 6 5 9 9 C 1.47268 * 110.15790 * 60.80071 * 8 7 6 10 10 C 1.47266 * 110.15881 * 60.80667 * 5 4 2 11 11 H 1.08994 * 109.58382 * 179.24947 * 10 5 4 12 12 C 1.50708 * 109.58235 * 58.97480 * 10 5 4 13 13 O 1.21291 * 119.99876 * 3.74298 * 12 10 5 14 14 N 1.34773 * 120.00024 * 183.74499 * 12 10 5 15 15 C 1.37097 * 120.00278 * 179.97438 * 14 12 10 16 16 H 1.08004 * 119.99339 * 0.02562 * 15 14 12 17 17 C 1.38943 * 120.00210 * 179.97438 * 15 14 12 18 18 N 1.31412 * 120.00012 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99917 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47142 * 180.02562 * 19 17 15 21 21 H 1.48504 * 109.46937 * 299.99770 * 19 17 15 22 22 H 1.48501 * 109.47404 * 59.99715 * 19 17 15 23 23 H 1.09006 * 109.47418 * 180.27061 * 1 2 3 24 24 H 1.08995 * 109.47418 * 300.27132 * 1 2 3 25 25 H 1.08998 * 109.47138 * 60.27314 * 1 2 3 26 26 H 1.09003 * 109.58231 * 0.02562 * 4 2 1 27 27 H 1.09002 * 109.58437 * 239.60252 * 4 2 1 28 28 H 1.09005 * 109.57840 * 180.65155 * 6 5 4 29 29 H 1.09005 * 109.58361 * 301.05392 * 6 5 4 30 30 H 1.09004 * 109.58047 * 119.80350 * 7 6 5 31 31 H 1.08991 * 109.58464 * 240.21399 * 7 6 5 32 32 H 1.09008 * 109.57900 * 179.38825 * 9 8 7 33 33 H 1.08999 * 109.58380 * 58.98264 * 9 8 7 34 34 H 0.97001 * 120.00143 * 0.02562 * 14 12 10 35 35 H 0.97001 * 119.99928 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0434 -0.7307 1.2448 5 7 2.8557 -1.8831 0.8177 6 6 2.0344 -2.8148 0.0254 7 6 1.5207 -2.0842 -1.2193 8 7 2.0240 -0.6998 -1.1989 9 6 3.4965 -0.6948 -1.2192 10 6 4.0100 -1.4250 0.0263 11 1 4.6112 -2.2833 -0.2734 12 6 4.8485 -0.4849 0.8535 13 8 4.5582 -0.2732 2.0120 14 7 5.9209 0.1206 0.3060 15 6 6.6834 0.9762 1.0583 16 1 6.4249 1.1647 2.0899 17 6 7.7893 1.6000 0.4941 18 7 8.1041 1.3702 -0.7609 19 14 8.8287 2.7653 1.5194 20 1 9.9408 3.2961 0.6907 21 1 7.9858 3.8914 1.9958 22 1 9.3853 2.0353 2.6867 23 1 -0.3634 -1.0277 0.0049 24 1 -0.3634 0.5180 0.8875 25 1 -0.3633 0.5096 -0.8924 26 1 1.1983 -1.0796 1.8383 27 1 2.6555 -0.0529 1.8399 28 1 2.6399 -3.6694 -0.2764 29 1 1.1894 -3.1562 0.6234 30 1 1.8810 -2.5905 -2.1148 31 1 0.4308 -2.0769 -1.2149 32 1 3.8584 0.3334 -1.2149 33 1 3.8513 -1.2052 -2.1146 34 1 6.1528 -0.0484 -0.6206 35 1 8.8759 1.8060 -1.1550 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123545515.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:00 Heat of formation + Delta-G solvation = -26.522556 kcal Electronic energy + Delta-G solvation = -18208.702086 eV Core-core repulsion = 15434.216291 eV Total energy + Delta-G solvation = -2774.485795 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.45193 -39.61380 -36.07549 -34.52899 -33.79354 -32.97125 -32.09901 -28.51154 -26.85999 -24.85514 -24.69064 -23.25664 -21.23297 -20.05208 -18.93235 -18.32611 -17.87443 -16.97784 -16.86508 -16.03312 -15.79352 -15.46385 -14.79889 -14.35893 -14.08446 -14.03420 -13.77939 -13.52660 -13.30368 -13.26354 -13.03778 -12.88581 -12.47341 -12.33557 -12.13962 -11.96571 -11.67019 -11.41405 -11.37715 -10.78484 -10.21121 -10.00354 -8.65577 -8.48603 -5.98043 1.37521 1.40005 1.50922 1.98343 2.25791 2.62968 2.95608 3.15109 3.28692 3.71636 3.76901 3.90144 3.91869 4.19848 4.32674 4.36806 4.41654 4.51709 4.62209 4.68935 4.78599 4.82985 4.90863 4.96092 4.99353 5.16237 5.26087 5.38163 5.55990 5.79195 5.94214 6.10050 6.25120 6.56774 7.09182 7.51259 8.06732 8.68107 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.042156 B = 0.006666 C = 0.006551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.039368 B = 4199.436016 C = 4273.418636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.036 3.964 3 H 0.056 0.944 4 C 0.010 3.990 5 N -0.512 5.512 6 C 0.011 3.989 7 C 0.008 3.992 8 N -0.511 5.511 9 C 0.027 3.973 10 C 0.042 3.958 11 H 0.111 0.889 12 C 0.447 3.553 13 O -0.615 6.615 14 N -0.565 5.565 15 C -0.337 4.337 16 H 0.078 0.922 17 C -0.009 4.009 18 N -0.918 5.918 19 Si 0.992 3.008 20 H -0.269 1.269 21 H -0.272 1.272 22 H -0.272 1.272 23 H 0.071 0.929 24 H 0.068 0.932 25 H 0.065 0.935 26 H 0.089 0.911 27 H 0.070 0.930 28 H 0.089 0.911 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.103 0.897 32 H 0.060 0.940 33 H 0.108 0.892 34 H 0.396 0.604 35 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.395 -6.049 -4.171 14.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.075 4.075 3 H 0.075 0.925 4 C -0.120 4.120 5 N -0.234 5.234 6 C -0.118 4.118 7 C -0.121 4.121 8 N -0.233 5.233 9 C -0.104 4.104 10 C -0.072 4.072 11 H 0.129 0.871 12 C 0.234 3.766 13 O -0.501 6.501 14 N -0.202 5.202 15 C -0.466 4.466 16 H 0.096 0.904 17 C -0.210 4.210 18 N -0.558 5.558 19 Si 0.816 3.184 20 H -0.193 1.193 21 H -0.198 1.198 22 H -0.197 1.197 23 H 0.090 0.910 24 H 0.087 0.913 25 H 0.084 0.916 26 H 0.107 0.893 27 H 0.089 0.911 28 H 0.108 0.892 29 H 0.114 0.886 30 H 0.113 0.887 31 H 0.121 0.879 32 H 0.078 0.922 33 H 0.126 0.874 34 H 0.230 0.770 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -12.425 -5.840 -3.532 14.176 hybrid contribution 1.099 0.640 0.143 1.280 sum -11.326 -5.200 -3.388 12.915 Atomic orbital electron populations 1.21797 0.91083 1.02964 1.02648 1.22429 0.98166 0.97349 0.89529 0.92536 1.23134 0.97712 0.93532 0.97598 1.63516 1.07375 1.15303 1.37159 1.23062 0.98266 0.95631 0.94819 1.23086 1.02274 0.87830 0.98904 1.63981 1.06650 1.15587 1.37082 1.22862 0.89201 1.01016 0.97300 1.22140 0.93592 0.98132 0.93339 0.87100 1.20467 0.83298 0.84662 0.88172 1.90417 1.72235 1.67755 1.19718 1.41856 1.24434 1.40060 1.13841 1.19621 1.08182 1.22149 0.96639 0.90381 1.26027 0.98145 0.99520 0.97279 1.69663 1.28715 1.44336 1.13088 0.85001 0.77580 0.77964 0.77867 1.19292 1.19754 1.19712 0.90980 0.91288 0.91556 0.89254 0.91149 0.89243 0.88644 0.88713 0.87900 0.92170 0.87399 0.77021 0.91170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.74 8.63 71.98 0.62 -2.12 16 2 C 0.04 1.08 3.05 44.90 0.14 1.21 16 3 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 4 C 0.01 0.34 5.35 86.29 0.46 0.80 16 5 N -0.51 -17.59 5.03 -870.90 -4.38 -21.97 16 6 C 0.01 0.27 6.13 86.29 0.53 0.80 16 7 C 0.01 0.18 5.75 86.29 0.50 0.67 16 8 N -0.51 -14.55 5.25 -866.47 -4.54 -19.09 16 9 C 0.03 0.89 5.54 86.31 0.48 1.37 16 10 C 0.04 1.56 2.87 44.18 0.13 1.69 16 11 H 0.11 3.79 8.14 -2.39 -0.02 3.77 16 12 C 0.45 22.02 6.55 87.66 0.57 22.59 16 13 O -0.61 -34.88 13.49 -3.06 -0.04 -34.92 16 14 N -0.57 -29.55 4.94 -306.98 -1.52 -31.07 16 15 C -0.34 -19.34 9.68 84.04 0.81 -18.53 16 16 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 17 C -0.01 -0.51 5.50 84.92 0.47 -0.04 16 18 N -0.92 -49.71 13.05 21.66 0.28 -49.42 16 19 Si 0.99 43.22 29.55 68.60 2.03 45.25 16 20 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 21 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 22 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 23 H 0.07 1.31 6.31 -2.38 -0.02 1.29 16 24 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.09 2.68 7.61 -2.39 -0.02 2.66 16 27 H 0.07 3.15 5.34 -2.39 -0.01 3.14 16 28 H 0.09 1.92 8.14 -2.38 -0.02 1.90 16 29 H 0.10 1.96 8.14 -2.38 -0.02 1.94 16 30 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 31 H 0.10 1.80 6.16 -2.39 -0.01 1.79 16 32 H 0.06 2.33 7.39 -2.38 -0.02 2.31 16 33 H 0.11 2.98 8.14 -2.39 -0.02 2.96 16 34 H 0.40 19.73 7.70 -92.71 -0.71 19.01 16 35 H 0.28 14.14 8.31 -92.71 -0.77 13.37 16 Total: -1.00 -66.70 272.80 -3.09 -69.78 By element: Atomic # 1 Polarization: 32.63 SS G_CDS: 0.38 Total: 33.01 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: 4.71 Total: 8.43 kcal Atomic # 7 Polarization: -111.40 SS G_CDS: -10.16 Total: -121.56 kcal Atomic # 8 Polarization: -34.88 SS G_CDS: -0.04 Total: -34.92 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -66.70 -3.09 -69.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123545515.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.262 kcal (2) G-P(sol) polarization free energy of solvation -66.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds