Wall clock time and date at job start Sun Mar 29 2020 22:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46498 * 109.46864 * 2 1 4 4 C 1.36823 * 120.00189 * 265.13365 * 3 2 1 5 5 H 1.07995 * 120.00214 * 143.01393 * 4 3 2 6 6 C 1.39074 * 119.99631 * 323.01510 * 4 3 2 7 7 N 1.31345 * 119.99847 * 156.90431 * 6 4 3 8 8 Si 1.86807 * 120.00271 * 336.90070 * 6 4 3 9 9 H 1.48494 * 109.46944 * 95.78288 * 8 6 4 10 10 H 1.48498 * 109.46911 * 215.78378 * 8 6 4 11 11 H 1.48497 * 109.46990 * 335.78479 * 8 6 4 12 12 C 1.34782 * 120.00084 * 85.13952 * 3 2 1 13 13 O 1.21661 * 119.99935 * 179.97438 * 12 3 2 14 14 C 1.46945 * 119.99902 * 0.26781 * 12 3 2 15 15 C 1.33127 * 120.00075 * 179.72681 * 14 12 3 16 16 C 1.50703 * 120.00033 * 180.02562 * 15 14 12 17 17 H 1.09003 * 110.75221 * 359.29592 * 16 15 14 18 18 C 1.55300 * 110.84743 * 122.77011 * 16 15 14 19 19 C 1.55205 * 100.82489 * 152.17777 * 18 16 15 20 20 O 1.43649 * 105.26303 * 323.81780 * 19 18 16 21 21 C 1.43244 * 109.96932 * 24.28324 * 20 19 18 22 22 H 1.09000 * 109.47005 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.47001 * 299.99616 * 1 2 3 24 24 H 1.09002 * 109.47263 * 59.99732 * 1 2 3 25 25 H 1.08996 * 109.47220 * 240.00178 * 2 1 3 26 26 H 1.08997 * 109.47446 * 119.99841 * 2 1 3 27 27 H 0.97005 * 120.00278 * 179.97438 * 7 6 4 28 28 H 1.08001 * 119.99993 * 359.72922 * 14 12 3 29 29 H 1.08001 * 119.99932 * 0.02562 * 15 14 12 30 30 H 1.08998 * 111.12896 * 270.24210 * 18 16 15 31 31 H 1.08994 * 111.12369 * 34.40582 * 18 16 15 32 32 H 1.08999 * 110.37434 * 204.80057 * 19 18 16 33 33 H 1.08999 * 110.12716 * 82.71157 * 19 18 16 34 34 H 1.08993 * 109.83250 * 238.77397 * 21 20 19 35 35 H 1.08997 * 109.90251 * 117.84139 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3411 1.9928 -1.1806 5 1 2.1256 3.0415 -1.3221 6 6 2.9466 1.2637 -2.1985 7 7 2.8530 1.6715 -3.4435 8 14 3.8932 -0.2954 -1.7949 9 1 3.0090 -1.4736 -1.9821 10 1 5.0672 -0.4092 -2.6971 11 1 4.3557 -0.2426 -0.3848 12 6 2.1496 2.0496 1.1630 13 8 2.5556 3.1965 1.1630 14 6 1.8087 1.3908 2.4315 15 6 1.9436 2.0491 3.5808 16 6 1.5945 1.3733 4.8817 17 1 1.2376 0.3584 4.7062 18 6 2.8105 1.3723 5.8478 19 6 2.0905 1.3499 7.2226 20 8 0.9172 2.1601 7.0483 21 6 0.5484 2.1957 5.6646 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 3.2756 1.1632 -4.1535 28 1 1.4487 0.3726 2.4315 29 1 2.3032 3.0675 3.5807 30 1 3.4233 0.4820 5.7071 31 1 3.4049 2.2785 5.7318 32 1 2.7325 1.7749 7.9941 33 1 1.8103 0.3291 7.4825 34 1 0.5464 3.2260 5.3089 35 1 -0.4407 1.7572 5.5328 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001125488823.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:14 Heat of formation + Delta-G solvation = -56.466728 kcal Electronic energy + Delta-G solvation = -17111.776773 eV Core-core repulsion = 14303.699751 eV Total energy + Delta-G solvation = -2808.077023 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.55235 -38.74924 -35.35693 -34.19698 -32.34876 -30.77421 -29.75439 -28.95362 -25.47586 -23.08352 -22.73114 -22.20863 -20.24283 -18.52127 -16.97413 -16.64288 -16.52347 -15.69037 -15.60761 -14.78101 -14.29239 -13.90105 -13.42446 -13.31667 -13.23473 -12.72896 -12.39890 -12.23396 -11.85394 -11.79022 -11.68743 -11.48945 -11.29422 -11.02076 -10.81737 -10.75878 -10.14466 -9.92079 -9.65740 -9.14057 -8.90527 -8.55515 -7.78592 -6.46293 -3.97032 1.88611 3.00489 3.19537 3.24011 3.76388 4.09370 4.19582 4.33160 4.52126 4.70555 4.85732 4.99177 5.08916 5.10298 5.27342 5.45222 5.53203 5.55279 5.64854 5.69989 5.80597 5.81603 5.88006 5.92847 6.10043 6.22228 6.39168 6.70854 6.74931 6.81487 6.87578 7.52193 8.26535 8.50058 8.94244 9.28308 9.78388 10.65514 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.039679 B = 0.005506 C = 0.005490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.489742 B = 5083.964843 C = 5098.715749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.085 3.915 3 N -0.454 5.454 4 C -0.313 4.313 5 H 0.106 0.894 6 C 0.061 3.939 7 N -0.857 5.857 8 Si 0.874 3.126 9 H -0.274 1.274 10 H -0.286 1.286 11 H -0.263 1.263 12 C 0.483 3.517 13 O -0.572 6.572 14 C -0.176 4.176 15 C -0.105 4.105 16 C -0.093 4.093 17 H 0.089 0.911 18 C -0.148 4.148 19 C 0.051 3.949 20 O -0.387 6.387 21 C 0.059 3.941 22 H 0.054 0.946 23 H 0.053 0.947 24 H 0.067 0.933 25 H 0.073 0.927 26 H 0.062 0.938 27 H 0.275 0.725 28 H 0.116 0.884 29 H 0.127 0.873 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.059 0.941 34 H 0.076 0.924 35 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.861 -6.821 15.183 16.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.039 4.039 3 N -0.174 5.174 4 C -0.441 4.441 5 H 0.124 0.876 6 C -0.146 4.146 7 N -0.493 5.493 8 Si 0.702 3.298 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.187 1.187 12 C 0.274 3.726 13 O -0.456 6.456 14 C -0.198 4.198 15 C -0.126 4.126 16 C -0.112 4.112 17 H 0.107 0.893 18 C -0.186 4.186 19 C -0.026 4.026 20 O -0.307 6.307 21 C -0.018 4.018 22 H 0.073 0.927 23 H 0.072 0.928 24 H 0.086 0.914 25 H 0.091 0.909 26 H 0.080 0.920 27 H 0.085 0.915 28 H 0.134 0.866 29 H 0.145 0.855 30 H 0.104 0.896 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.077 0.923 34 H 0.094 0.906 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.725 -6.171 15.074 16.515 hybrid contribution 0.633 -1.178 -0.320 1.375 sum -2.092 -7.349 14.754 16.615 Atomic orbital electron populations 1.22141 0.96087 1.00969 1.02833 1.21845 0.94835 0.85737 1.01441 1.43680 1.56220 1.11435 1.06057 1.19058 1.38842 0.98016 0.88141 0.87624 1.25388 0.96266 0.98232 0.94672 1.69745 1.40278 1.40191 0.99054 0.86985 0.80417 0.82819 0.79622 1.20125 1.21214 1.18731 1.18304 0.83055 0.87662 0.83562 1.90646 1.50015 1.18160 1.86807 1.23053 1.02476 1.00227 0.93994 1.23231 0.97570 1.00086 0.91695 1.21865 0.95536 0.99832 0.93965 0.89305 1.23366 0.97717 1.03922 0.93582 1.23425 0.86476 0.95221 0.97430 1.88387 1.45637 1.71230 1.25411 1.23185 0.97375 1.00761 0.80467 0.92699 0.92837 0.91423 0.90862 0.92000 0.91473 0.86615 0.85538 0.89640 0.89788 0.89762 0.92283 0.90584 0.91154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.72 10.13 37.16 0.38 -2.35 16 2 C 0.08 1.69 4.40 -4.04 -0.02 1.67 16 3 N -0.45 -11.12 2.18 -116.21 -0.25 -11.37 16 4 C -0.31 -8.92 9.36 -15.01 -0.14 -9.06 16 5 H 0.11 3.39 7.90 -52.49 -0.41 2.97 16 6 C 0.06 1.68 5.26 -17.45 -0.09 1.59 16 7 N -0.86 -24.60 13.95 55.50 0.77 -23.83 16 8 Si 0.87 20.42 25.07 -169.99 -4.26 16.16 16 9 H -0.27 -5.91 6.68 56.52 0.38 -5.53 16 10 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 11 H -0.26 -6.14 7.11 56.52 0.40 -5.74 16 12 C 0.48 11.54 7.54 -12.73 -0.10 11.45 16 13 O -0.57 -15.91 16.08 5.22 0.08 -15.82 16 14 C -0.18 -3.14 8.41 -37.84 -0.32 -3.46 16 15 C -0.11 -1.63 8.28 -36.09 -0.30 -1.93 16 16 C -0.09 -1.10 3.31 -89.83 -0.30 -1.40 16 17 H 0.09 0.94 7.89 -51.93 -0.41 0.53 16 18 C -0.15 -1.53 6.63 -24.34 -0.16 -1.69 16 19 C 0.05 0.49 7.78 38.33 0.30 0.79 16 20 O -0.39 -4.87 11.36 -35.23 -0.40 -5.27 16 21 C 0.06 0.69 7.40 37.88 0.28 0.97 16 22 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.05 0.84 7.68 -51.93 -0.40 0.44 16 24 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 25 H 0.07 1.55 3.51 -51.93 -0.18 1.36 16 26 H 0.06 1.05 6.37 -51.93 -0.33 0.72 16 27 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 28 H 0.12 1.73 6.07 -52.49 -0.32 1.41 16 29 H 0.13 2.17 7.49 -52.49 -0.39 1.78 16 30 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.08 0.90 8.03 -51.93 -0.42 0.49 16 32 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.08 0.92 7.81 -51.93 -0.41 0.52 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 287.95 15.07 4.34 4.34 Total: -1.00 -32.27 287.95 -5.15 -37.42 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -4.97 Total: 1.78 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: -0.47 Total: -3.41 kcal Atomic # 7 Polarization: -35.72 SS G_CDS: 0.52 Total: -35.20 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: -0.32 Total: -21.09 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -4.26 Total: 16.16 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -32.27 -5.15 -37.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001125488823.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.042 kcal (2) G-P(sol) polarization free energy of solvation -32.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds