Wall clock time and date at job start Sun Mar 29 2020 22:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46498 * 109.46864 * 2 1 4 4 C 1.36823 * 120.00189 * 265.13365 * 3 2 1 5 5 H 1.07995 * 120.00214 * 143.01393 * 4 3 2 6 6 C 1.39074 * 119.99631 * 323.01510 * 4 3 2 7 7 N 1.31345 * 119.99847 * 156.90431 * 6 4 3 8 8 Si 1.86807 * 120.00271 * 336.90070 * 6 4 3 9 9 H 1.48494 * 109.46944 * 95.78288 * 8 6 4 10 10 H 1.48498 * 109.46911 * 215.78378 * 8 6 4 11 11 H 1.48497 * 109.46990 * 335.78479 * 8 6 4 12 12 C 1.34782 * 120.00084 * 85.13952 * 3 2 1 13 13 O 1.21661 * 119.99935 * 179.97438 * 12 3 2 14 14 C 1.46945 * 119.99902 * 0.26781 * 12 3 2 15 15 C 1.33127 * 120.00075 * 179.72681 * 14 12 3 16 16 C 1.50703 * 120.00033 * 180.02562 * 15 14 12 17 17 H 1.09003 * 110.75221 * 359.29592 * 16 15 14 18 18 C 1.55300 * 110.84743 * 122.77011 * 16 15 14 19 19 C 1.55205 * 100.82489 * 152.17777 * 18 16 15 20 20 O 1.43649 * 105.26303 * 323.81780 * 19 18 16 21 21 C 1.43244 * 109.96932 * 24.28324 * 20 19 18 22 22 H 1.09000 * 109.47005 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.47001 * 299.99616 * 1 2 3 24 24 H 1.09002 * 109.47263 * 59.99732 * 1 2 3 25 25 H 1.08996 * 109.47220 * 240.00178 * 2 1 3 26 26 H 1.08997 * 109.47446 * 119.99841 * 2 1 3 27 27 H 0.97005 * 120.00278 * 179.97438 * 7 6 4 28 28 H 1.08001 * 119.99993 * 359.72922 * 14 12 3 29 29 H 1.08001 * 119.99932 * 0.02562 * 15 14 12 30 30 H 1.08998 * 111.12896 * 270.24210 * 18 16 15 31 31 H 1.08994 * 111.12369 * 34.40582 * 18 16 15 32 32 H 1.08999 * 110.37434 * 204.80057 * 19 18 16 33 33 H 1.08999 * 110.12716 * 82.71157 * 19 18 16 34 34 H 1.08993 * 109.83250 * 238.77397 * 21 20 19 35 35 H 1.08997 * 109.90251 * 117.84139 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3411 1.9928 -1.1806 5 1 2.1256 3.0415 -1.3221 6 6 2.9466 1.2637 -2.1985 7 7 2.8530 1.6715 -3.4435 8 14 3.8932 -0.2954 -1.7949 9 1 3.0090 -1.4736 -1.9821 10 1 5.0672 -0.4092 -2.6971 11 1 4.3557 -0.2426 -0.3848 12 6 2.1496 2.0496 1.1630 13 8 2.5556 3.1965 1.1630 14 6 1.8087 1.3908 2.4315 15 6 1.9436 2.0491 3.5808 16 6 1.5945 1.3733 4.8817 17 1 1.2376 0.3584 4.7062 18 6 2.8105 1.3723 5.8478 19 6 2.0905 1.3499 7.2226 20 8 0.9172 2.1601 7.0483 21 6 0.5484 2.1957 5.6646 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 3.2756 1.1632 -4.1535 28 1 1.4487 0.3726 2.4315 29 1 2.3032 3.0675 3.5807 30 1 3.4233 0.4820 5.7071 31 1 3.4049 2.2785 5.7318 32 1 2.7325 1.7749 7.9941 33 1 1.8103 0.3291 7.4825 34 1 0.5464 3.2260 5.3089 35 1 -0.4407 1.7572 5.5328 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001125488823.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:13 Heat of formation + Delta-G solvation = -79.471531 kcal Electronic energy + Delta-G solvation = -17112.774336 eV Core-core repulsion = 14303.699751 eV Total energy + Delta-G solvation = -2809.074586 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.78641 -40.22440 -37.17408 -35.46675 -34.35588 -31.87553 -31.34850 -29.95406 -27.34407 -24.59740 -24.00256 -23.15554 -21.47601 -20.07878 -18.90193 -18.16226 -17.72101 -17.23297 -16.72541 -16.02338 -15.76519 -15.58797 -14.95261 -14.60433 -14.42962 -14.28896 -14.10050 -13.82636 -13.16151 -12.92008 -12.82692 -12.66605 -12.65598 -12.50038 -12.22340 -11.95321 -11.75523 -11.65644 -11.09898 -10.51877 -10.45722 -10.25117 -9.74836 -8.56669 -6.14723 0.46548 1.17759 1.32534 1.42989 2.14616 2.40690 2.69636 2.92717 3.02389 3.56578 3.70443 3.96149 4.00069 4.12660 4.20689 4.28044 4.36214 4.40285 4.45537 4.54334 4.78792 4.86641 4.92643 4.93336 4.98735 5.00240 5.16811 5.34362 5.41446 5.47909 5.61505 6.00926 6.03560 6.55900 6.91150 7.27444 7.86385 8.60801 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.039679 B = 0.005506 C = 0.005490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.489742 B = 5083.964843 C = 5098.715749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.075 3.925 3 N -0.466 5.466 4 C -0.338 4.338 5 H 0.040 0.960 6 C 0.014 3.986 7 N -0.905 5.905 8 Si 0.948 3.052 9 H -0.234 1.234 10 H -0.286 1.286 11 H -0.259 1.259 12 C 0.474 3.526 13 O -0.631 6.631 14 C -0.194 4.194 15 C -0.069 4.069 16 C -0.089 4.089 17 H 0.117 0.883 18 C -0.147 4.147 19 C 0.049 3.951 20 O -0.407 6.407 21 C 0.058 3.942 22 H 0.098 0.902 23 H 0.064 0.936 24 H 0.035 0.965 25 H 0.062 0.938 26 H 0.104 0.896 27 H 0.282 0.718 28 H 0.158 0.842 29 H 0.101 0.899 30 H 0.106 0.894 31 H 0.072 0.928 32 H 0.096 0.904 33 H 0.080 0.920 34 H 0.062 0.938 35 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.049 -10.697 17.901 21.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.046 4.046 3 N -0.186 5.186 4 C -0.466 4.466 5 H 0.058 0.942 6 C -0.189 4.189 7 N -0.542 5.542 8 Si 0.771 3.229 9 H -0.159 1.159 10 H -0.213 1.213 11 H -0.183 1.183 12 C 0.268 3.732 13 O -0.519 6.519 14 C -0.215 4.215 15 C -0.089 4.089 16 C -0.107 4.107 17 H 0.136 0.864 18 C -0.184 4.184 19 C -0.027 4.027 20 O -0.327 6.327 21 C -0.019 4.019 22 H 0.117 0.883 23 H 0.083 0.917 24 H 0.054 0.946 25 H 0.080 0.920 26 H 0.122 0.878 27 H 0.092 0.908 28 H 0.175 0.825 29 H 0.119 0.881 30 H 0.124 0.876 31 H 0.090 0.910 32 H 0.115 0.885 33 H 0.098 0.902 34 H 0.080 0.920 35 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.945 -10.078 17.799 20.665 hybrid contribution 0.661 0.204 -1.055 1.262 sum -2.283 -9.874 16.744 19.572 Atomic orbital electron populations 1.22093 0.93878 1.03467 1.01901 1.22160 0.96796 0.82879 1.02804 1.43804 1.56676 1.13301 1.04775 1.18621 1.41206 0.96024 0.90786 0.94184 1.26198 0.96265 1.02555 0.93836 1.69855 1.41377 1.42637 1.00316 0.85836 0.78803 0.79079 0.79204 1.15881 1.21320 1.18307 1.19368 0.81388 0.87021 0.85464 1.90604 1.52394 1.20933 1.87973 1.22834 1.05702 1.02031 0.90912 1.23443 0.93541 0.98775 0.93187 1.21931 0.96469 1.00670 0.91665 0.86448 1.23398 0.97205 1.04422 0.93416 1.23618 0.85692 0.96089 0.97295 1.88373 1.46789 1.72100 1.25484 1.23187 0.98130 1.00211 0.80348 0.88333 0.91669 0.94576 0.91955 0.87839 0.90837 0.82469 0.88119 0.87598 0.90958 0.88539 0.90226 0.91981 0.89563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.78 10.13 71.98 0.73 -4.05 16 2 C 0.08 2.79 4.40 86.38 0.38 3.17 16 3 N -0.47 -23.06 2.18 -639.81 -1.40 -24.46 16 4 C -0.34 -20.38 9.36 84.12 0.79 -19.60 16 5 H 0.04 2.85 7.90 -2.91 -0.02 2.83 16 6 C 0.01 0.82 5.26 84.97 0.45 1.26 16 7 N -0.90 -54.16 13.95 21.68 0.30 -53.85 16 8 Si 0.95 41.64 25.07 68.60 1.72 43.36 16 9 H -0.23 -8.79 6.68 99.48 0.66 -8.13 16 10 H -0.29 -12.52 7.11 99.48 0.71 -11.82 16 11 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 12 C 0.47 23.00 7.54 86.52 0.65 23.65 16 13 O -0.63 -37.07 16.08 -4.22 -0.07 -37.14 16 14 C -0.19 -6.45 8.41 23.40 0.20 -6.25 16 15 C -0.07 -1.99 8.28 24.54 0.20 -1.79 16 16 C -0.09 -1.75 3.31 -10.28 -0.03 -1.78 16 17 H 0.12 1.77 7.89 -2.39 -0.02 1.75 16 18 C -0.15 -2.49 6.63 32.14 0.21 -2.27 16 19 C 0.05 0.77 7.78 72.74 0.57 1.33 16 20 O -0.41 -9.09 11.36 -148.98 -1.69 -10.78 16 21 C 0.06 1.19 7.40 72.45 0.54 1.73 16 22 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 23 H 0.06 1.84 7.68 -2.38 -0.02 1.82 16 24 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 25 H 0.06 2.43 3.51 -2.39 -0.01 2.42 16 26 H 0.10 2.95 6.37 -2.39 -0.02 2.94 16 27 H 0.28 15.33 8.31 -92.70 -0.77 14.56 16 28 H 0.16 3.87 6.07 -2.91 -0.02 3.85 16 29 H 0.10 3.48 7.49 -2.91 -0.02 3.46 16 30 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.07 1.40 8.03 -2.39 -0.02 1.38 16 32 H 0.10 1.27 8.14 -2.39 -0.02 1.26 16 33 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.06 1.43 7.81 -2.39 -0.02 1.41 16 35 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -77.46 287.95 4.57 -72.89 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: 1.03 Total: 14.59 kcal Atomic # 6 Polarization: -9.28 SS G_CDS: 4.68 Total: -4.60 kcal Atomic # 7 Polarization: -77.22 SS G_CDS: -1.10 Total: -78.32 kcal Atomic # 8 Polarization: -46.16 SS G_CDS: -1.76 Total: -47.92 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 1.72 Total: 43.36 kcal Total: -77.46 4.57 -72.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001125488823.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.583 kcal (2) G-P(sol) polarization free energy of solvation -77.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds