Wall clock time and date at job start Sun Mar 29 2020 22:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46502 * 109.46936 * 2 1 4 4 C 1.36820 * 119.99952 * 95.41334 * 3 2 1 5 5 H 1.08005 * 120.00038 * 210.73167 * 4 3 2 6 6 C 1.39075 * 120.00297 * 30.72723 * 4 3 2 7 7 N 1.31354 * 119.99449 * 22.11216 * 6 4 3 8 8 Si 1.86791 * 120.00426 * 202.11056 * 6 4 3 9 9 H 1.48497 * 109.47336 * 270.00111 * 8 6 4 10 10 H 1.48501 * 109.47012 * 30.00093 * 8 6 4 11 11 H 1.48500 * 109.47087 * 149.99847 * 8 6 4 12 12 C 1.34774 * 120.00183 * 275.40909 * 3 2 1 13 13 O 1.21659 * 119.99993 * 180.02562 * 12 3 2 14 14 C 1.46952 * 119.99809 * 0.02562 * 12 3 2 15 15 C 1.33126 * 119.99935 * 187.66887 * 14 12 3 16 16 C 1.50708 * 119.99916 * 18.78241 * 15 14 12 17 17 H 1.09001 * 110.45186 * 9.06167 * 16 15 14 18 18 C 1.54501 * 110.51027 * 246.45337 * 16 15 14 19 19 C 1.54476 * 104.06303 * 241.35477 * 18 16 15 20 20 O 1.44427 * 104.80366 * 23.97926 * 19 18 16 21 21 C 1.44424 * 105.27544 * 319.48801 * 20 19 18 22 22 H 1.09005 * 109.47461 * 300.00306 * 1 2 3 23 23 H 1.09003 * 109.46877 * 60.00023 * 1 2 3 24 24 H 1.08995 * 109.47283 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47467 * 240.00356 * 2 1 3 26 26 H 1.09004 * 109.47122 * 119.99486 * 2 1 3 27 27 H 0.97002 * 119.99982 * 179.97438 * 7 6 4 28 28 H 1.07994 * 120.00166 * 7.66384 * 14 12 3 29 29 H 1.07995 * 119.99895 * 198.78249 * 15 14 12 30 30 H 1.08995 * 110.51384 * 359.97438 * 18 16 15 31 31 H 1.09000 * 110.51193 * 122.71249 * 18 16 15 32 32 H 1.08999 * 110.37213 * 142.80878 * 19 18 16 33 33 H 1.09002 * 110.37475 * 265.15084 * 19 18 16 34 34 H 1.08997 * 110.37436 * 281.67976 * 21 20 19 35 35 H 1.09000 * 110.36878 * 159.33762 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3517 1.9890 1.1796 5 1 2.2309 3.0565 1.2901 6 6 2.8459 1.2321 2.2365 7 7 3.3980 0.0628 2.0050 8 14 2.7248 1.8781 3.9849 9 1 3.9412 2.6667 4.3067 10 1 1.5255 2.7446 4.1105 11 1 2.6115 0.7363 4.9277 12 6 2.1391 2.0533 -1.1620 13 8 2.5451 3.2002 -1.1620 14 6 1.7806 1.4007 -2.4289 15 6 2.0419 2.0048 -3.5860 16 6 3.0550 3.1191 -3.6425 17 1 3.5902 3.1956 -2.6959 18 6 2.3671 4.4594 -3.9854 19 6 3.0201 4.8860 -5.3188 20 8 3.4946 3.6555 -5.9077 21 6 4.0423 2.8944 -4.8092 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8901 27 1 3.7431 -0.4650 2.7421 28 1 1.3052 0.4310 -2.4212 29 1 1.5278 1.6964 -4.4843 30 1 1.2944 4.3160 -4.1146 31 1 2.5642 5.1993 -3.2097 32 1 2.2830 5.3580 -5.9684 33 1 3.8533 5.5639 -5.1335 34 1 5.0321 3.2669 -4.5457 35 1 4.0902 1.8365 -5.0673 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001125488885.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:18 Heat of formation + Delta-G solvation = -51.957329 kcal Electronic energy + Delta-G solvation = -17467.343315 eV Core-core repulsion = 14659.461835 eV Total energy + Delta-G solvation = -2807.881481 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.36017 -38.36384 -35.29070 -33.40642 -32.08000 -30.36658 -29.48141 -28.49954 -25.34815 -22.95143 -22.30547 -21.64323 -20.30116 -17.97660 -16.87762 -16.42124 -15.69358 -15.65138 -14.94908 -14.71942 -14.13657 -13.60230 -13.14387 -13.08454 -12.82020 -12.48124 -12.10735 -11.84447 -11.68716 -11.33418 -11.13286 -11.10623 -10.97144 -10.57416 -10.43782 -10.36079 -10.28591 -10.05799 -9.61151 -9.01112 -8.56544 -8.10404 -7.52673 -6.37433 -3.93274 2.07591 3.15742 3.22877 3.28745 4.11188 4.25204 4.35380 4.90160 5.06121 5.10607 5.16835 5.28071 5.44407 5.55873 5.68761 5.85459 5.91832 5.96035 6.01178 6.10518 6.15249 6.24593 6.33826 6.45213 6.53585 6.65216 6.88887 6.92496 7.03253 7.25099 7.30634 7.56811 8.20831 8.50177 9.16189 9.40728 10.02395 10.63632 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.035460 B = 0.006208 C = 0.005749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.431512 B = 4509.319106 C = 4869.135722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.086 3.914 3 N -0.429 5.429 4 C -0.303 4.303 5 H 0.095 0.905 6 C 0.032 3.968 7 N -0.866 5.866 8 Si 0.919 3.081 9 H -0.277 1.277 10 H -0.269 1.269 11 H -0.282 1.282 12 C 0.474 3.526 13 O -0.582 6.582 14 C -0.185 4.185 15 C -0.100 4.100 16 C -0.106 4.106 17 H 0.130 0.870 18 C -0.132 4.132 19 C 0.042 3.958 20 O -0.384 6.384 21 C 0.049 3.951 22 H 0.055 0.945 23 H 0.042 0.958 24 H 0.050 0.950 25 H 0.048 0.952 26 H 0.122 0.878 27 H 0.269 0.731 28 H 0.117 0.883 29 H 0.112 0.888 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.055 0.945 34 H 0.059 0.941 35 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.721 0.943 -8.085 8.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.038 4.038 3 N -0.145 5.145 4 C -0.431 4.431 5 H 0.113 0.887 6 C -0.171 4.171 7 N -0.505 5.505 8 Si 0.745 3.255 9 H -0.202 1.202 10 H -0.194 1.194 11 H -0.207 1.207 12 C 0.266 3.734 13 O -0.469 6.469 14 C -0.206 4.206 15 C -0.121 4.121 16 C -0.124 4.124 17 H 0.148 0.852 18 C -0.170 4.170 19 C -0.034 4.034 20 O -0.303 6.303 21 C -0.027 4.027 22 H 0.074 0.926 23 H 0.061 0.939 24 H 0.069 0.931 25 H 0.067 0.933 26 H 0.139 0.861 27 H 0.079 0.921 28 H 0.135 0.865 29 H 0.130 0.870 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.103 0.897 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.448 1.261 -8.132 8.586 hybrid contribution -0.179 -0.016 1.070 1.085 sum -2.628 1.246 -7.063 7.638 Atomic orbital electron populations 1.22212 0.98198 1.00288 1.01515 1.21780 0.91791 0.85496 1.04699 1.43503 1.54116 1.11681 1.05235 1.19508 1.40607 0.94590 0.88361 0.88717 1.25338 0.94944 0.96285 1.00569 1.69827 1.34697 1.13387 1.32563 0.86056 0.79096 0.78474 0.81862 1.20248 1.19386 1.20742 1.18346 0.83514 0.87674 0.83898 1.90499 1.51248 1.18691 1.86456 1.23030 1.03794 0.99664 0.94080 1.23223 0.95813 0.96271 0.96812 1.22082 0.95782 0.93088 1.01410 0.85234 1.22793 1.00342 0.97349 0.96494 1.23465 0.97782 0.87533 0.94651 1.89044 1.79510 1.30353 1.31405 1.23572 0.96254 0.96671 0.86234 0.92563 0.93860 0.93136 0.93334 0.86053 0.92071 0.86515 0.87040 0.91344 0.90182 0.89732 0.92683 0.92266 0.89388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.00 10.04 37.16 0.37 -2.63 16 2 C 0.09 1.89 5.29 -4.04 -0.02 1.87 16 3 N -0.43 -10.83 2.57 -116.21 -0.30 -11.13 16 4 C -0.30 -8.29 9.05 -15.02 -0.14 -8.42 16 5 H 0.10 2.72 7.63 -52.48 -0.40 2.31 16 6 C 0.03 0.84 4.97 -17.45 -0.09 0.75 16 7 N -0.87 -22.87 11.09 55.50 0.62 -22.25 16 8 Si 0.92 20.25 29.61 -169.99 -5.03 15.22 16 9 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 10 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 11 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 12 C 0.47 11.53 7.28 -12.73 -0.09 11.44 16 13 O -0.58 -15.43 13.20 5.23 0.07 -15.36 16 14 C -0.18 -3.59 8.70 -37.83 -0.33 -3.92 16 15 C -0.10 -1.74 8.54 -36.08 -0.31 -2.04 16 16 C -0.11 -1.85 2.53 -90.20 -0.23 -2.08 16 17 H 0.13 2.75 5.30 -51.93 -0.28 2.47 16 18 C -0.13 -2.09 6.62 -25.17 -0.17 -2.25 16 19 C 0.04 0.58 7.63 37.93 0.29 0.87 16 20 O -0.38 -6.00 11.65 -35.23 -0.41 -6.41 16 21 C 0.05 0.75 7.17 37.94 0.27 1.02 16 22 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 23 H 0.04 0.75 7.40 -51.93 -0.38 0.37 16 24 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.05 0.98 6.53 -51.93 -0.34 0.64 16 26 H 0.12 2.92 5.09 -51.93 -0.26 2.66 16 27 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 28 H 0.12 2.02 6.04 -52.49 -0.32 1.70 16 29 H 0.11 1.65 8.06 -52.49 -0.42 1.22 16 30 H 0.07 1.06 7.73 -51.93 -0.40 0.66 16 31 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 32 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.09 1.24 7.86 -51.93 -0.41 0.83 16 LS Contribution 286.06 15.07 4.31 4.31 Total: -1.00 -29.47 286.06 -6.07 -35.54 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -4.88 Total: 5.48 kcal Atomic # 6 Polarization: -4.96 SS G_CDS: -0.43 Total: -5.39 kcal Atomic # 7 Polarization: -33.70 SS G_CDS: 0.32 Total: -33.38 kcal Atomic # 8 Polarization: -21.43 SS G_CDS: -0.34 Total: -21.77 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.03 Total: 15.22 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -29.47 -6.07 -35.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001125488885.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.422 kcal (2) G-P(sol) polarization free energy of solvation -29.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds