Wall clock time and date at job start Sun Mar 29 2020 22:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46502 * 109.46936 * 2 1 4 4 C 1.36820 * 119.99952 * 95.41334 * 3 2 1 5 5 H 1.08005 * 120.00038 * 210.73167 * 4 3 2 6 6 C 1.39075 * 120.00297 * 30.72723 * 4 3 2 7 7 N 1.31354 * 119.99449 * 22.11216 * 6 4 3 8 8 Si 1.86791 * 120.00426 * 202.11056 * 6 4 3 9 9 H 1.48497 * 109.47336 * 270.00111 * 8 6 4 10 10 H 1.48501 * 109.47012 * 30.00093 * 8 6 4 11 11 H 1.48500 * 109.47087 * 149.99847 * 8 6 4 12 12 C 1.34774 * 120.00183 * 275.40909 * 3 2 1 13 13 O 1.21659 * 119.99993 * 180.02562 * 12 3 2 14 14 C 1.46952 * 119.99809 * 0.02562 * 12 3 2 15 15 C 1.33126 * 119.99935 * 187.66887 * 14 12 3 16 16 C 1.50708 * 119.99916 * 18.78241 * 15 14 12 17 17 H 1.09001 * 110.45186 * 9.06167 * 16 15 14 18 18 C 1.54501 * 110.51027 * 246.45337 * 16 15 14 19 19 C 1.54476 * 104.06303 * 241.35477 * 18 16 15 20 20 O 1.44427 * 104.80366 * 23.97926 * 19 18 16 21 21 C 1.44424 * 105.27544 * 319.48801 * 20 19 18 22 22 H 1.09005 * 109.47461 * 300.00306 * 1 2 3 23 23 H 1.09003 * 109.46877 * 60.00023 * 1 2 3 24 24 H 1.08995 * 109.47283 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47467 * 240.00356 * 2 1 3 26 26 H 1.09004 * 109.47122 * 119.99486 * 2 1 3 27 27 H 0.97002 * 119.99982 * 179.97438 * 7 6 4 28 28 H 1.07994 * 120.00166 * 7.66384 * 14 12 3 29 29 H 1.07995 * 119.99895 * 198.78249 * 15 14 12 30 30 H 1.08995 * 110.51384 * 359.97438 * 18 16 15 31 31 H 1.09000 * 110.51193 * 122.71249 * 18 16 15 32 32 H 1.08999 * 110.37213 * 142.80878 * 19 18 16 33 33 H 1.09002 * 110.37475 * 265.15084 * 19 18 16 34 34 H 1.08997 * 110.37436 * 281.67976 * 21 20 19 35 35 H 1.09000 * 110.36878 * 159.33762 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3517 1.9890 1.1796 5 1 2.2309 3.0565 1.2901 6 6 2.8459 1.2321 2.2365 7 7 3.3980 0.0628 2.0050 8 14 2.7248 1.8781 3.9849 9 1 3.9412 2.6667 4.3067 10 1 1.5255 2.7446 4.1105 11 1 2.6115 0.7363 4.9277 12 6 2.1391 2.0533 -1.1620 13 8 2.5451 3.2002 -1.1620 14 6 1.7806 1.4007 -2.4289 15 6 2.0419 2.0048 -3.5860 16 6 3.0550 3.1191 -3.6425 17 1 3.5902 3.1956 -2.6959 18 6 2.3671 4.4594 -3.9854 19 6 3.0201 4.8860 -5.3188 20 8 3.4946 3.6555 -5.9077 21 6 4.0423 2.8944 -4.8092 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8901 27 1 3.7431 -0.4650 2.7421 28 1 1.3052 0.4310 -2.4212 29 1 1.5278 1.6964 -4.4843 30 1 1.2944 4.3160 -4.1146 31 1 2.5642 5.1993 -3.2097 32 1 2.2830 5.3580 -5.9684 33 1 3.8533 5.5639 -5.1335 34 1 5.0321 3.2669 -4.5457 35 1 4.0902 1.8365 -5.0673 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001125488885.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:17 Heat of formation + Delta-G solvation = -70.333775 kcal Electronic energy + Delta-G solvation = -17468.140178 eV Core-core repulsion = 14659.461835 eV Total energy + Delta-G solvation = -2808.678343 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.84749 -39.93688 -37.09646 -34.92247 -33.98750 -31.72530 -31.18190 -29.77898 -27.22802 -24.46747 -23.74569 -23.12855 -21.76533 -19.66052 -18.74362 -18.02890 -17.11613 -16.97283 -16.70003 -16.08261 -15.80795 -15.30613 -14.69190 -14.67317 -14.39444 -13.85533 -13.58962 -13.47011 -13.40667 -12.91861 -12.66489 -12.65202 -12.36070 -12.27095 -12.11523 -11.91010 -11.78757 -11.63518 -10.90613 -10.80906 -10.18247 -9.82684 -9.44555 -8.33565 -5.98717 0.55931 1.39422 1.41004 1.53667 2.28563 2.52091 3.08404 3.13324 3.19553 3.79164 3.89451 4.03281 4.13164 4.28928 4.32355 4.38350 4.60263 4.64608 4.67421 4.78725 4.83555 4.85049 4.90420 5.03115 5.16312 5.28864 5.31772 5.42027 5.43714 5.63388 5.73834 5.89196 6.22305 6.57351 7.19906 7.52110 8.12901 8.66026 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.035460 B = 0.006208 C = 0.005749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.431512 B = 4509.319106 C = 4869.135722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.085 3.915 3 N -0.447 5.447 4 C -0.339 4.339 5 H 0.066 0.934 6 C 0.001 3.999 7 N -0.886 5.886 8 Si 0.981 3.019 9 H -0.278 1.278 10 H -0.270 1.270 11 H -0.266 1.266 12 C 0.463 3.537 13 O -0.618 6.618 14 C -0.209 4.209 15 C -0.068 4.068 16 C -0.117 4.117 17 H 0.088 0.912 18 C -0.131 4.131 19 C 0.047 3.953 20 O -0.390 6.390 21 C 0.056 3.944 22 H 0.038 0.962 23 H 0.052 0.948 24 H 0.084 0.916 25 H 0.064 0.936 26 H 0.099 0.901 27 H 0.275 0.725 28 H 0.142 0.858 29 H 0.151 0.849 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.111 0.889 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.461 0.261 -9.528 10.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.038 4.038 3 N -0.164 5.164 4 C -0.467 4.467 5 H 0.084 0.916 6 C -0.202 4.202 7 N -0.524 5.524 8 Si 0.804 3.196 9 H -0.204 1.204 10 H -0.194 1.194 11 H -0.190 1.190 12 C 0.256 3.744 13 O -0.507 6.507 14 C -0.230 4.230 15 C -0.088 4.088 16 C -0.136 4.136 17 H 0.106 0.894 18 C -0.169 4.169 19 C -0.029 4.029 20 O -0.309 6.309 21 C -0.020 4.020 22 H 0.057 0.943 23 H 0.071 0.929 24 H 0.103 0.897 25 H 0.082 0.918 26 H 0.117 0.883 27 H 0.085 0.915 28 H 0.160 0.840 29 H 0.169 0.831 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.129 0.871 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -3.195 0.554 -9.585 10.119 hybrid contribution 0.107 0.260 1.414 1.442 sum -3.088 0.815 -8.171 8.773 Atomic orbital electron populations 1.22096 0.95469 1.02353 1.01125 1.21844 0.94029 0.83702 1.04224 1.43745 1.54815 1.12887 1.04953 1.19414 1.42949 0.93863 0.90459 0.91635 1.26042 0.93999 0.96479 1.03631 1.69899 1.34652 1.14073 1.33765 0.85138 0.78706 0.78264 0.77456 1.20366 1.19422 1.19029 1.19199 0.82390 0.87480 0.85350 1.90480 1.52546 1.20353 1.87330 1.22895 1.06601 1.01288 0.92190 1.23635 0.93538 0.94237 0.97370 1.22040 0.96457 0.94488 1.00565 0.89421 1.22751 1.00633 0.96047 0.97448 1.23563 0.98635 0.87120 0.93597 1.89040 1.79564 1.30964 1.31349 1.23518 0.95655 0.97699 0.85137 0.94310 0.92852 0.89737 0.91798 0.88331 0.91525 0.84011 0.83143 0.90942 0.91931 0.87053 0.91663 0.91784 0.87865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.39 10.04 71.98 0.72 -4.67 16 2 C 0.09 3.71 5.29 86.38 0.46 4.17 16 3 N -0.45 -23.20 2.57 -639.80 -1.65 -24.84 16 4 C -0.34 -19.32 9.05 84.12 0.76 -18.56 16 5 H 0.07 4.01 7.63 -2.91 -0.02 3.98 16 6 C 0.00 0.03 4.97 84.97 0.42 0.45 16 7 N -0.89 -47.35 11.09 21.69 0.24 -47.11 16 8 Si 0.98 42.20 29.61 68.60 2.03 44.23 16 9 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 10 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 11 H -0.27 -10.66 7.11 99.48 0.71 -9.96 16 12 C 0.46 23.06 7.28 86.53 0.63 23.69 16 13 O -0.62 -34.31 13.20 -4.22 -0.06 -34.36 16 14 C -0.21 -7.88 8.70 23.41 0.20 -7.68 16 15 C -0.07 -2.18 8.54 24.54 0.21 -1.97 16 16 C -0.12 -4.01 2.53 -10.52 -0.03 -4.03 16 17 H 0.09 3.85 5.30 -2.39 -0.01 3.83 16 18 C -0.13 -4.01 6.62 31.61 0.21 -3.80 16 19 C 0.05 1.17 7.63 72.48 0.55 1.72 16 20 O -0.39 -10.99 11.65 -148.98 -1.74 -12.73 16 21 C 0.06 1.60 7.17 72.49 0.52 2.12 16 22 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 23 H 0.05 1.76 7.40 -2.39 -0.02 1.74 16 24 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 25 H 0.06 2.51 6.53 -2.39 -0.02 2.50 16 26 H 0.10 4.79 5.09 -2.39 -0.01 4.78 16 27 H 0.27 13.64 8.31 -92.71 -0.77 12.87 16 28 H 0.14 4.56 6.04 -2.91 -0.02 4.54 16 29 H 0.15 3.76 8.06 -2.91 -0.02 3.74 16 30 H 0.07 2.13 7.73 -2.39 -0.02 2.11 16 31 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.10 2.61 7.86 -2.39 -0.02 2.59 16 Total: -1.00 -65.97 286.06 4.57 -61.40 By element: Atomic # 1 Polarization: 20.89 SS G_CDS: 1.08 Total: 21.97 kcal Atomic # 6 Polarization: -13.22 SS G_CDS: 4.66 Total: -8.56 kcal Atomic # 7 Polarization: -70.55 SS G_CDS: -1.41 Total: -71.95 kcal Atomic # 8 Polarization: -45.30 SS G_CDS: -1.79 Total: -47.09 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.23 kcal Total: -65.97 4.57 -61.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001125488885.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.933 kcal (2) G-P(sol) polarization free energy of solvation -65.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds