Wall clock time and date at job start Sun Mar 29 2020 22:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 113.99930 * 2 1 4 4 C 1.53002 * 109.47351 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47066 * 179.97438 * 4 3 2 6 6 C 1.34948 * 126.03348 * 125.00298 * 5 4 3 7 7 C 1.35325 * 107.74277 * 179.97438 * 6 5 4 8 8 C 1.50700 * 126.03919 * 179.97438 * 7 6 5 9 9 N 1.46494 * 109.47189 * 89.99617 * 8 7 6 10 10 C 1.46493 * 120.00332 * 270.00031 * 9 8 7 11 11 C 1.36937 * 119.99867 * 89.99938 * 9 8 7 12 12 H 1.08002 * 120.00132 * 22.37063 * 11 9 8 13 13 C 1.38814 * 120.00171 * 202.37465 * 11 9 8 14 14 N 1.31614 * 120.00202 * 11.33390 * 13 11 9 15 15 Si 1.86797 * 119.99861 * 191.33943 * 13 11 9 16 16 H 1.48511 * 109.47243 * 59.99851 * 15 13 11 17 17 H 1.48507 * 109.46984 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47489 * 299.99569 * 15 13 11 19 19 C 1.39872 * 107.91964 * 359.97438 * 7 6 5 20 20 N 1.30839 * 108.20060 * 359.97438 * 19 7 6 21 21 H 1.09000 * 109.47157 * 60.00338 * 1 2 3 22 22 H 1.09004 * 109.47218 * 180.02562 * 1 2 3 23 23 H 1.09009 * 109.47413 * 300.00085 * 1 2 3 24 24 H 1.09000 * 109.47582 * 59.99688 * 3 2 1 25 25 H 1.09006 * 109.47103 * 299.99833 * 3 2 1 26 26 H 1.09000 * 109.47107 * 59.99306 * 4 3 2 27 27 H 1.09006 * 109.46806 * 299.99924 * 4 3 2 28 28 H 1.07994 * 126.13279 * 0.25457 * 6 5 4 29 29 H 1.08993 * 109.46863 * 209.99953 * 8 7 6 30 30 H 1.08999 * 109.46691 * 329.99655 * 8 7 6 31 31 H 1.09000 * 109.47158 * 94.19698 * 10 9 8 32 32 H 1.09002 * 109.47517 * 214.19795 * 10 9 8 33 33 H 1.09004 * 109.47417 * 334.19740 * 10 9 8 34 34 H 0.96995 * 120.00555 * 180.02562 * 14 13 11 35 35 H 1.07996 * 125.89882 * 179.97438 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 4.1312 2.5231 -0.0013 6 6 5.0263 2.9940 0.8921 7 6 5.3266 4.2666 0.5434 8 6 6.2850 5.1804 1.2628 9 7 7.6292 5.0156 0.7041 10 6 8.5403 4.0175 1.2696 11 6 8.0341 5.7946 -0.3468 12 1 7.5497 6.7413 -0.5354 13 6 9.0671 5.3675 -1.1698 14 7 9.5072 4.1300 -1.0853 15 14 9.8328 6.5492 -2.3973 16 1 10.4080 7.7112 -1.6732 17 1 10.9079 5.8537 -3.1496 18 1 8.7916 7.0223 -3.3447 19 6 4.5901 4.5840 -0.6026 20 7 3.8739 3.5393 -0.9304 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 1.6886 1.8465 0.8899 25 1 1.6886 1.8464 -0.8900 26 1 3.8567 0.6439 -0.8908 27 1 3.8574 0.6437 0.8892 28 1 5.4338 2.4510 1.7319 29 1 5.9640 6.2145 1.1381 30 1 6.2991 4.9297 2.3234 31 1 8.4600 3.0899 0.7029 32 1 9.5639 4.3883 1.2165 33 1 8.2748 3.8316 2.3104 34 1 10.2292 3.8316 -1.6601 35 1 4.6094 5.5283 -1.1263 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001139782352.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:07 Heat of formation + Delta-G solvation = 62.090183 kcal Electronic energy + Delta-G solvation = -16864.860726 eV Core-core repulsion = 14094.217468 eV Total energy + Delta-G solvation = -2770.643258 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.54822 -38.09980 -35.49283 -33.46563 -31.43841 -29.64739 -28.95402 -26.59972 -25.80630 -24.94418 -23.20855 -21.25923 -20.19670 -19.35957 -17.02134 -16.55837 -16.33138 -15.75305 -15.34864 -14.74062 -14.26966 -13.75524 -13.53521 -13.39625 -12.97601 -12.79150 -12.24695 -12.01303 -11.72109 -11.51596 -11.41914 -10.88696 -10.79408 -10.66213 -10.37681 -10.04091 -9.92263 -9.80810 -9.72801 -8.80842 -8.46201 -7.71131 -6.66210 -5.63418 -3.07554 2.46634 2.75753 3.43943 3.48906 3.49804 3.58664 3.77354 4.59880 4.70499 4.83929 5.08727 5.13298 5.19240 5.37470 5.40712 5.43851 5.54438 5.65929 5.75866 5.88028 6.11280 6.28975 6.57020 6.74431 6.82547 6.84610 6.98311 7.33506 7.46559 7.61180 7.81350 7.88900 8.31856 8.49428 9.33312 9.96992 10.46060 11.41829 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.040091 B = 0.004944 C = 0.004822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.238150 B = 5662.630932 C = 5804.772123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.393 6.393 3 C 0.053 3.947 4 C 0.145 3.855 5 N -0.384 5.384 6 C 0.046 3.954 7 C -0.218 4.218 8 C 0.216 3.784 9 N -0.594 5.594 10 C 0.166 3.834 11 C -0.248 4.248 12 H 0.069 0.931 13 C 0.001 3.999 14 N -0.909 5.909 15 Si 0.903 3.097 16 H -0.285 1.285 17 H -0.292 1.292 18 H -0.284 1.284 19 C 0.069 3.931 20 N -0.314 5.314 21 H 0.043 0.957 22 H 0.087 0.913 23 H 0.041 0.959 24 H 0.053 0.947 25 H 0.064 0.936 26 H 0.086 0.914 27 H 0.098 0.902 28 H 0.163 0.837 29 H 0.052 0.948 30 H 0.043 0.957 31 H 0.025 0.975 32 H 0.044 0.956 33 H -0.005 1.005 34 H 0.251 0.749 35 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.053 -5.468 5.114 15.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.311 6.311 3 C -0.024 4.024 4 C 0.022 3.978 5 N -0.170 5.170 6 C -0.099 4.099 7 C -0.232 4.232 8 C 0.088 3.912 9 N -0.316 5.316 10 C 0.021 3.979 11 C -0.378 4.378 12 H 0.086 0.914 13 C -0.197 4.197 14 N -0.554 5.554 15 Si 0.733 3.267 16 H -0.211 1.211 17 H -0.218 1.218 18 H -0.210 1.210 19 C -0.118 4.118 20 N -0.136 5.136 21 H 0.061 0.939 22 H 0.105 0.895 23 H 0.060 0.940 24 H 0.071 0.929 25 H 0.083 0.917 26 H 0.104 0.896 27 H 0.116 0.884 28 H 0.180 0.820 29 H 0.071 0.929 30 H 0.061 0.939 31 H 0.043 0.957 32 H 0.063 0.937 33 H 0.013 0.987 34 H 0.061 0.939 35 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -14.664 -6.342 4.223 16.525 hybrid contribution 0.918 0.887 -0.389 1.335 sum -13.746 -5.454 3.834 15.278 Atomic orbital electron populations 1.22742 0.80485 1.02760 1.00208 1.87780 1.20160 1.27577 1.95578 1.22716 0.93334 0.84680 1.01713 1.21160 0.91716 0.80378 1.04527 1.48196 1.35260 1.11246 1.22306 1.22173 0.95436 0.95745 0.96528 1.21472 1.03948 0.96806 1.00994 1.19264 0.83360 0.95015 0.93586 1.44089 1.07880 1.42575 1.37043 1.20761 0.93575 0.92757 0.90784 1.19178 1.15633 0.98229 1.04789 0.91357 1.25022 1.00966 0.95700 0.98009 1.70054 1.29694 1.14669 1.41029 0.86362 0.78856 0.80265 0.81208 1.21120 1.21787 1.20995 1.23686 0.94707 0.97414 0.95992 1.77156 1.25936 0.96976 1.13505 0.93871 0.89455 0.94009 0.92856 0.91739 0.89592 0.88367 0.82009 0.92948 0.93877 0.95684 0.93725 0.98664 0.93896 0.80700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.40 16 2 O -0.39 -4.62 10.70 -35.23 -0.38 -5.00 16 3 C 0.05 0.65 6.13 37.16 0.23 0.88 16 4 C 0.14 1.95 6.88 -4.04 -0.03 1.93 16 5 N -0.38 -6.68 3.68 -61.36 -0.23 -6.90 16 6 C 0.05 0.82 11.36 -17.22 -0.20 0.62 16 7 C -0.22 -4.36 5.68 -105.05 -0.60 -4.96 16 8 C 0.22 4.45 6.19 -5.20 -0.03 4.42 16 9 N -0.59 -15.01 2.91 -182.51 -0.53 -15.54 16 10 C 0.17 4.13 9.01 59.84 0.54 4.67 16 11 C -0.25 -6.86 9.67 -15.06 -0.15 -7.00 16 12 H 0.07 1.82 7.84 -52.49 -0.41 1.41 16 13 C 0.00 0.03 5.13 -17.43 -0.09 -0.06 16 14 N -0.91 -27.10 10.59 55.49 0.59 -26.51 16 15 Si 0.90 22.23 29.57 -169.99 -5.03 17.20 16 16 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 17 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 18 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 19 C 0.07 1.37 11.96 -17.36 -0.21 1.16 16 20 N -0.31 -6.15 12.42 30.62 0.38 -5.76 16 21 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 22 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 23 H 0.04 0.31 8.14 -51.92 -0.42 -0.11 16 24 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 27 H 0.10 1.10 8.07 -51.93 -0.42 0.69 16 28 H 0.16 2.45 8.06 -52.49 -0.42 2.03 16 29 H 0.05 1.03 8.03 -51.93 -0.42 0.62 16 30 H 0.04 0.79 7.86 -51.93 -0.41 0.38 16 31 H 0.02 0.68 7.42 -51.93 -0.39 0.29 16 32 H 0.04 1.19 7.19 -51.93 -0.37 0.82 16 33 H -0.01 -0.11 7.84 -51.93 -0.41 -0.52 16 34 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 35 H 0.18 3.21 8.06 -52.49 -0.42 2.79 16 LS Contribution 301.74 15.07 4.55 4.55 Total: -1.00 -32.55 301.74 -5.40 -37.95 By element: Atomic # 1 Polarization: 2.31 SS G_CDS: -5.34 Total: -3.03 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: 0.58 Total: 3.04 kcal Atomic # 7 Polarization: -54.93 SS G_CDS: 0.21 Total: -54.72 kcal Atomic # 8 Polarization: -4.62 SS G_CDS: -0.38 Total: -5.00 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.03 Total: 17.20 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -32.55 -5.40 -37.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139782352.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.038 kcal (2) G-P(sol) polarization free energy of solvation -32.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds