Wall clock time and date at job start Sun Mar 29 2020 22:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 113.99930 * 2 1 4 4 C 1.53002 * 109.47351 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47066 * 179.97438 * 4 3 2 6 6 C 1.34948 * 126.03348 * 125.00298 * 5 4 3 7 7 C 1.35325 * 107.74277 * 179.97438 * 6 5 4 8 8 C 1.50700 * 126.03919 * 179.97438 * 7 6 5 9 9 N 1.46494 * 109.47189 * 89.99617 * 8 7 6 10 10 C 1.46493 * 120.00332 * 270.00031 * 9 8 7 11 11 C 1.36937 * 119.99867 * 89.99938 * 9 8 7 12 12 H 1.08002 * 120.00132 * 22.37063 * 11 9 8 13 13 C 1.38814 * 120.00171 * 202.37465 * 11 9 8 14 14 N 1.31614 * 120.00202 * 11.33390 * 13 11 9 15 15 Si 1.86797 * 119.99861 * 191.33943 * 13 11 9 16 16 H 1.48511 * 109.47243 * 59.99851 * 15 13 11 17 17 H 1.48507 * 109.46984 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47489 * 299.99569 * 15 13 11 19 19 C 1.39872 * 107.91964 * 359.97438 * 7 6 5 20 20 N 1.30839 * 108.20060 * 359.97438 * 19 7 6 21 21 H 1.09000 * 109.47157 * 60.00338 * 1 2 3 22 22 H 1.09004 * 109.47218 * 180.02562 * 1 2 3 23 23 H 1.09009 * 109.47413 * 300.00085 * 1 2 3 24 24 H 1.09000 * 109.47582 * 59.99688 * 3 2 1 25 25 H 1.09006 * 109.47103 * 299.99833 * 3 2 1 26 26 H 1.09000 * 109.47107 * 59.99306 * 4 3 2 27 27 H 1.09006 * 109.46806 * 299.99924 * 4 3 2 28 28 H 1.07994 * 126.13279 * 0.25457 * 6 5 4 29 29 H 1.08993 * 109.46863 * 209.99953 * 8 7 6 30 30 H 1.08999 * 109.46691 * 329.99655 * 8 7 6 31 31 H 1.09000 * 109.47158 * 94.19698 * 10 9 8 32 32 H 1.09002 * 109.47517 * 214.19795 * 10 9 8 33 33 H 1.09004 * 109.47417 * 334.19740 * 10 9 8 34 34 H 0.96995 * 120.00555 * 180.02562 * 14 13 11 35 35 H 1.07996 * 125.89882 * 179.97438 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 4.1312 2.5231 -0.0013 6 6 5.0263 2.9940 0.8921 7 6 5.3266 4.2666 0.5434 8 6 6.2850 5.1804 1.2628 9 7 7.6292 5.0156 0.7041 10 6 8.5403 4.0175 1.2696 11 6 8.0341 5.7946 -0.3468 12 1 7.5497 6.7413 -0.5354 13 6 9.0671 5.3675 -1.1698 14 7 9.5072 4.1300 -1.0853 15 14 9.8328 6.5492 -2.3973 16 1 10.4080 7.7112 -1.6732 17 1 10.9079 5.8537 -3.1496 18 1 8.7916 7.0223 -3.3447 19 6 4.5901 4.5840 -0.6026 20 7 3.8739 3.5393 -0.9304 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 1.6886 1.8465 0.8899 25 1 1.6886 1.8464 -0.8900 26 1 3.8567 0.6439 -0.8908 27 1 3.8574 0.6437 0.8892 28 1 5.4338 2.4510 1.7319 29 1 5.9640 6.2145 1.1381 30 1 6.2991 4.9297 2.3234 31 1 8.4600 3.0899 0.7029 32 1 9.5639 4.3883 1.2165 33 1 8.2748 3.8316 2.3104 34 1 10.2292 3.8316 -1.6601 35 1 4.6094 5.5283 -1.1263 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001139782352.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:07 Heat of formation + Delta-G solvation = 40.780753 kcal Electronic energy + Delta-G solvation = -16865.784772 eV Core-core repulsion = 14094.217468 eV Total energy + Delta-G solvation = -2771.567304 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.97195 -38.98840 -37.35992 -34.76779 -33.33423 -31.18306 -30.28145 -27.92461 -27.43552 -26.47584 -24.36233 -23.13433 -21.55877 -20.85588 -18.60813 -18.13367 -17.29375 -16.93284 -16.62513 -16.31276 -15.58391 -15.36548 -15.13609 -14.86968 -14.59236 -14.16835 -13.73202 -13.44074 -12.99761 -12.83888 -12.70931 -12.51662 -12.47249 -12.33802 -12.16218 -11.97660 -11.82184 -11.30969 -10.76893 -10.56377 -10.22647 -9.20963 -8.67927 -7.74884 -5.20223 1.05527 1.49098 1.50393 1.55333 1.56765 2.03666 2.58882 2.82185 3.40717 3.66695 3.88891 4.01367 4.07774 4.15011 4.22590 4.45991 4.46741 4.57749 4.61622 4.65035 4.80689 4.86013 4.94985 5.04178 5.20647 5.41843 5.46916 5.70468 5.80679 5.85478 6.02463 6.27237 6.41708 6.86018 7.24827 7.98741 8.41091 9.28582 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.040091 B = 0.004944 C = 0.004822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.238150 B = 5662.630932 C = 5804.772123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.407 6.407 3 C 0.065 3.935 4 C 0.137 3.863 5 N -0.380 5.380 6 C 0.057 3.943 7 C -0.246 4.246 8 C 0.217 3.783 9 N -0.610 5.610 10 C 0.180 3.820 11 C -0.250 4.250 12 H 0.074 0.926 13 C -0.056 4.056 14 N -0.942 5.942 15 Si 0.963 3.037 16 H -0.276 1.276 17 H -0.300 1.300 18 H -0.278 1.278 19 C 0.051 3.949 20 N -0.334 5.334 21 H 0.046 0.954 22 H 0.106 0.894 23 H 0.052 0.948 24 H 0.059 0.941 25 H 0.050 0.950 26 H 0.082 0.918 27 H 0.126 0.874 28 H 0.193 0.807 29 H 0.057 0.943 30 H 0.070 0.930 31 H -0.005 1.005 32 H 0.015 0.985 33 H 0.034 0.966 34 H 0.243 0.757 35 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.245 -5.745 6.085 17.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.325 6.325 3 C -0.013 4.013 4 C 0.016 3.984 5 N -0.164 5.164 6 C -0.089 4.089 7 C -0.260 4.260 8 C 0.091 3.909 9 N -0.332 5.332 10 C 0.035 3.965 11 C -0.380 4.380 12 H 0.091 0.909 13 C -0.251 4.251 14 N -0.590 5.590 15 Si 0.792 3.208 16 H -0.202 1.202 17 H -0.226 1.226 18 H -0.204 1.204 19 C -0.135 4.135 20 N -0.156 5.156 21 H 0.064 0.936 22 H 0.124 0.876 23 H 0.071 0.929 24 H 0.078 0.922 25 H 0.068 0.932 26 H 0.100 0.900 27 H 0.144 0.856 28 H 0.210 0.790 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.014 0.986 32 H 0.034 0.966 33 H 0.053 0.947 34 H 0.052 0.948 35 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -15.915 -6.608 5.203 18.001 hybrid contribution 1.141 0.902 -0.614 1.579 sum -14.774 -5.706 4.589 16.489 Atomic orbital electron populations 1.22980 0.78705 1.04305 1.00915 1.87754 1.22084 1.27023 1.95661 1.22487 0.92441 0.85032 1.01319 1.21469 0.92625 0.78578 1.05747 1.48466 1.34758 1.11885 1.21337 1.22621 0.94300 0.95210 0.96796 1.21392 1.05161 0.97797 1.01628 1.19356 0.81251 0.95599 0.94717 1.44321 1.10083 1.42244 1.36593 1.20496 0.92313 0.91209 0.92438 1.19546 1.15086 0.98694 1.04720 0.90853 1.25727 1.02044 0.97098 1.00195 1.70236 1.30282 1.16312 1.42136 0.85405 0.77770 0.78501 0.79172 1.20206 1.22631 1.20444 1.23875 0.95212 0.97945 0.96418 1.77106 1.26445 0.97501 1.14549 0.93557 0.87568 0.92917 0.92235 0.93157 0.89974 0.85557 0.78977 0.92494 0.91199 0.98620 0.96649 0.94718 0.94807 0.80362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 113.37 1.25 1.64 16 2 O -0.41 -8.75 10.70 -148.98 -1.59 -10.34 16 3 C 0.06 1.47 6.13 71.98 0.44 1.91 16 4 C 0.14 3.41 6.88 86.38 0.59 4.01 16 5 N -0.38 -12.51 3.68 -348.05 -1.28 -13.79 16 6 C 0.06 1.89 11.36 83.54 0.95 2.84 16 7 C -0.25 -9.47 5.68 -20.14 -0.11 -9.59 16 8 C 0.22 8.55 6.19 85.63 0.53 9.08 16 9 N -0.61 -30.26 2.91 -731.34 -2.13 -32.38 16 10 C 0.18 8.86 9.01 127.77 1.15 10.02 16 11 C -0.25 -13.71 9.67 84.03 0.81 -12.89 16 12 H 0.07 3.86 7.84 -2.91 -0.02 3.84 16 13 C -0.06 -3.21 5.13 84.86 0.44 -2.78 16 14 N -0.94 -57.10 10.59 21.65 0.23 -56.87 16 15 Si 0.96 46.03 29.57 68.60 2.03 48.06 16 16 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 17 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 18 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 19 C 0.05 2.02 11.96 85.24 1.02 3.03 16 20 N -0.33 -12.81 12.42 -57.02 -0.71 -13.52 16 21 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 22 H 0.11 1.14 8.14 -2.38 -0.02 1.12 16 23 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 24 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.05 1.28 8.14 -2.38 -0.02 1.26 16 26 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 27 H 0.13 2.44 8.07 -2.38 -0.02 2.42 16 28 H 0.19 5.11 8.06 -2.91 -0.02 5.09 16 29 H 0.06 2.16 8.03 -2.39 -0.02 2.14 16 30 H 0.07 2.35 7.86 -2.39 -0.02 2.33 16 31 H 0.00 -0.25 7.42 -2.39 -0.02 -0.27 16 32 H 0.01 0.80 7.19 -2.39 -0.02 0.79 16 33 H 0.03 1.39 7.84 -2.38 -0.02 1.38 16 34 H 0.24 14.49 8.31 -92.71 -0.77 13.72 16 35 H 0.18 6.58 8.06 -2.91 -0.02 6.56 16 Total: -1.00 -69.32 301.74 4.67 -64.65 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: 1.05 Total: 6.93 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: 7.07 Total: 7.27 kcal Atomic # 7 Polarization: -112.68 SS G_CDS: -3.89 Total: -116.57 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: -1.59 Total: -10.34 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Total: -69.32 4.67 -64.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139782352.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.430 kcal (2) G-P(sol) polarization free energy of solvation -69.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds