Wall clock time and date at job start Sun Mar 29 2020 22:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46500 * 119.99891 * 2 1 4 4 C 1.50709 * 109.46628 * 269.99811 * 3 2 1 5 5 H 1.07995 * 119.99936 * 359.97438 * 4 3 2 6 6 C 1.37878 * 119.99578 * 180.02562 * 4 3 2 7 7 N 1.31514 * 120.00345 * 359.97438 * 6 4 3 8 8 Si 1.86802 * 119.99783 * 179.97438 * 6 4 3 9 9 H 1.48497 * 109.47118 * 59.99790 * 8 6 4 10 10 H 1.48501 * 109.47123 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.46997 * 299.99576 * 8 6 4 12 12 C 1.34776 * 120.00288 * 179.97438 * 2 1 3 13 13 O 1.21616 * 120.00152 * 179.97438 * 12 2 1 14 14 C 1.47106 * 119.99887 * 0.02562 * 12 2 1 15 15 C 1.32988 * 119.99691 * 187.22727 * 14 12 2 16 16 C 1.50702 * 120.00352 * 15.11408 * 15 14 12 17 17 H 1.08999 * 110.45519 * 11.95499 * 16 15 14 18 18 C 1.54516 * 110.50830 * 249.35526 * 16 15 14 19 19 C 1.54476 * 104.05993 * 241.35285 * 18 16 15 20 20 O 1.44425 * 104.80754 * 23.97672 * 19 18 16 21 21 C 1.44423 * 105.27261 * 319.49227 * 20 19 18 22 22 H 1.08999 * 109.47343 * 270.00344 * 1 2 3 23 23 H 1.09000 * 109.47571 * 30.00651 * 1 2 3 24 24 H 1.09001 * 109.46651 * 150.00477 * 1 2 3 25 25 H 1.08997 * 109.47499 * 29.99141 * 3 2 1 26 26 H 1.08994 * 109.47532 * 150.00009 * 3 2 1 27 27 H 0.96996 * 119.99947 * 180.02562 * 7 6 4 28 28 H 1.08001 * 119.99961 * 7.22766 * 14 12 2 29 29 H 1.08000 * 120.00099 * 195.37919 * 15 14 12 30 30 H 1.08997 * 110.50917 * 359.97438 * 18 16 15 31 31 H 1.08997 * 110.50635 * 122.70899 * 18 16 15 32 32 H 1.09005 * 110.37296 * 142.81515 * 19 18 16 33 33 H 1.09005 * 110.37107 * 265.03296 * 19 18 16 34 34 H 1.09003 * 110.36974 * 281.66990 * 21 20 19 35 35 H 1.09006 * 110.37010 * 159.34419 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7037 -1.4209 5 1 2.0981 1.0956 -2.2417 6 6 3.1268 2.8774 -1.6729 7 7 3.5541 3.6176 -0.6734 8 14 3.4388 3.4162 -3.4341 9 1 2.1415 3.5939 -4.1345 10 1 4.1812 4.7023 -3.4342 11 1 4.2413 2.3808 -4.1337 12 6 2.1389 -1.1672 0.0005 13 8 3.3551 -1.1671 0.0001 14 6 1.4034 -2.4412 0.0005 15 6 2.0605 -3.5882 0.1459 16 6 3.4823 -3.5841 0.6454 17 1 3.7461 -2.6012 1.0358 18 6 4.4537 -3.9969 -0.4831 19 6 5.1228 -5.2833 0.0495 20 8 4.1846 -5.8173 1.0090 21 6 3.6795 -4.6700 1.7262 22 1 -0.3634 0.0001 1.0276 23 1 -0.3634 0.8899 -0.5139 24 1 -0.3633 -0.8901 -0.5138 25 1 1.6084 2.0284 0.5137 26 1 3.1498 1.1385 0.5138 27 1 4.0309 4.4434 -0.8507 28 1 0.3299 -2.4449 -0.1176 29 1 1.5766 -4.5224 -0.0980 30 1 3.9054 -4.2043 -1.4020 31 1 5.1991 -3.2191 -0.6487 32 1 5.2806 -5.9932 -0.7625 33 1 6.0699 -5.0457 0.5341 34 1 4.4042 -4.3382 2.4698 35 1 2.7284 -4.9087 2.2023 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001142405415.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:02 Heat of formation + Delta-G solvation = -54.684010 kcal Electronic energy + Delta-G solvation = -17169.120180 eV Core-core repulsion = 14361.120462 eV Total energy + Delta-G solvation = -2807.999718 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.68461 -38.64479 -35.08665 -33.75526 -32.61528 -30.70910 -28.87491 -27.73131 -25.83619 -23.84925 -22.64625 -21.50660 -20.27653 -18.01354 -16.80883 -16.47873 -15.96532 -15.83756 -15.20621 -14.77932 -14.38281 -14.17277 -13.50741 -13.09879 -12.65086 -12.49943 -12.30950 -12.12080 -11.86777 -11.58991 -11.30459 -11.20812 -10.93878 -10.73288 -10.60943 -10.53456 -10.14281 -9.80884 -9.63553 -9.03542 -8.59949 -8.44139 -7.59969 -6.04985 -4.09939 1.70590 3.31151 3.35427 3.38525 3.92154 4.06745 4.07895 4.44597 4.81019 4.93172 5.03594 5.18359 5.27372 5.29595 5.36870 5.52829 5.68432 5.74840 5.77880 5.80654 5.94054 5.95072 6.21322 6.27726 6.35476 6.52365 6.70530 6.92688 7.10529 7.43995 7.54619 7.91432 8.22600 8.43516 8.89374 9.10273 9.55214 11.02923 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.030413 B = 0.005798 C = 0.005266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.436899 B = 4828.476756 C = 5316.104969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.597 5.597 3 C 0.245 3.755 4 C -0.526 4.526 5 H 0.056 0.944 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.531 3.469 13 O -0.537 6.537 14 C -0.210 4.210 15 C -0.069 4.069 16 C -0.118 4.118 17 H 0.133 0.867 18 C -0.133 4.133 19 C 0.043 3.957 20 O -0.383 6.383 21 C 0.050 3.950 22 H 0.044 0.956 23 H 0.073 0.927 24 H 0.059 0.941 25 H 0.032 0.968 26 H 0.044 0.956 27 H 0.264 0.736 28 H 0.126 0.874 29 H 0.120 0.880 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.057 0.943 34 H 0.061 0.939 35 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.811 -13.816 2.791 14.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.328 5.328 3 C 0.125 3.875 4 C -0.565 4.565 5 H 0.074 0.926 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.211 1.211 11 H -0.202 1.202 12 C 0.321 3.679 13 O -0.418 6.418 14 C -0.230 4.230 15 C -0.089 4.089 16 C -0.136 4.136 17 H 0.150 0.850 18 C -0.171 4.171 19 C -0.034 4.034 20 O -0.302 6.302 21 C -0.027 4.027 22 H 0.063 0.937 23 H 0.091 0.909 24 H 0.077 0.923 25 H 0.050 0.950 26 H 0.062 0.938 27 H 0.073 0.927 28 H 0.143 0.857 29 H 0.137 0.863 30 H 0.089 0.911 31 H 0.103 0.897 32 H 0.105 0.895 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.149 -13.803 2.869 14.445 hybrid contribution -0.032 0.668 -1.135 1.317 sum -3.181 -13.135 1.734 13.625 Atomic orbital electron populations 1.21674 0.81483 1.02540 1.00419 1.48118 1.06203 1.07931 1.70558 1.19290 0.92557 0.78140 0.97477 1.21398 1.36559 1.06276 0.92273 0.92561 1.24932 0.95350 0.96371 0.97418 1.69921 1.38368 1.14369 1.30786 0.86560 0.78366 0.77815 0.84685 1.20258 1.21146 1.20203 1.18444 0.87447 0.84071 0.77950 1.90624 1.13584 1.86863 1.50730 1.22983 1.00106 0.93543 1.06409 1.23446 0.95463 0.97114 0.92899 1.22259 0.92841 1.02741 0.95726 0.84974 1.22803 0.98723 0.97083 0.98481 1.23475 0.92547 0.95440 0.91927 1.89058 1.59699 1.29886 1.51510 1.23559 0.99118 0.85540 0.94479 0.93739 0.90867 0.92251 0.95033 0.93780 0.92657 0.85676 0.86254 0.91134 0.89739 0.89499 0.92430 0.92037 0.89357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.33 10.20 59.85 0.61 1.94 16 2 N -0.60 -12.76 2.86 -184.36 -0.53 -13.29 16 3 C 0.24 6.41 5.16 -5.19 -0.03 6.39 16 4 C -0.53 -14.98 9.39 -34.44 -0.32 -15.30 16 5 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 6 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 7 N -0.90 -26.61 13.29 55.43 0.74 -25.88 16 8 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 9 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 C 0.53 11.00 7.41 -12.66 -0.09 10.91 16 13 O -0.54 -12.82 12.81 5.26 0.07 -12.75 16 14 C -0.21 -3.24 9.23 -37.81 -0.35 -3.59 16 15 C -0.07 -0.97 8.56 -36.13 -0.31 -1.28 16 16 C -0.12 -1.75 2.52 -90.20 -0.23 -1.97 16 17 H 0.13 2.38 5.17 -51.94 -0.27 2.11 16 18 C -0.13 -1.89 6.59 -25.16 -0.17 -2.06 16 19 C 0.04 0.52 7.63 37.93 0.29 0.81 16 20 O -0.38 -5.28 11.65 -35.23 -0.41 -5.69 16 21 C 0.05 0.63 7.17 37.93 0.27 0.91 16 22 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 24 H 0.06 0.78 6.02 -51.93 -0.31 0.47 16 25 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 26 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 27 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 28 H 0.13 1.56 6.16 -52.49 -0.32 1.24 16 29 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 30 H 0.07 0.99 7.73 -51.93 -0.40 0.59 16 31 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 32 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.09 0.99 7.86 -51.93 -0.41 0.58 16 LS Contribution 292.17 15.07 4.40 4.40 Total: -1.00 -32.28 292.17 -6.19 -38.47 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: -5.02 Total: -0.54 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: -0.42 Total: -1.59 kcal Atomic # 7 Polarization: -39.38 SS G_CDS: 0.21 Total: -39.17 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: -0.34 Total: -18.44 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -32.28 -6.19 -38.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142405415.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.216 kcal (2) G-P(sol) polarization free energy of solvation -32.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds