Wall clock time and date at job start Sun Mar 29 2020 22:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46500 * 119.99891 * 2 1 4 4 C 1.50709 * 109.46628 * 269.99811 * 3 2 1 5 5 H 1.07995 * 119.99936 * 359.97438 * 4 3 2 6 6 C 1.37878 * 119.99578 * 180.02562 * 4 3 2 7 7 N 1.31514 * 120.00345 * 359.97438 * 6 4 3 8 8 Si 1.86802 * 119.99783 * 179.97438 * 6 4 3 9 9 H 1.48497 * 109.47118 * 59.99790 * 8 6 4 10 10 H 1.48501 * 109.47123 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.46997 * 299.99576 * 8 6 4 12 12 C 1.34776 * 120.00288 * 179.97438 * 2 1 3 13 13 O 1.21616 * 120.00152 * 179.97438 * 12 2 1 14 14 C 1.47106 * 119.99887 * 0.02562 * 12 2 1 15 15 C 1.32988 * 119.99691 * 187.22727 * 14 12 2 16 16 C 1.50702 * 120.00352 * 15.11408 * 15 14 12 17 17 H 1.08999 * 110.45519 * 11.95499 * 16 15 14 18 18 C 1.54516 * 110.50830 * 249.35526 * 16 15 14 19 19 C 1.54476 * 104.05993 * 241.35285 * 18 16 15 20 20 O 1.44425 * 104.80754 * 23.97672 * 19 18 16 21 21 C 1.44423 * 105.27261 * 319.49227 * 20 19 18 22 22 H 1.08999 * 109.47343 * 270.00344 * 1 2 3 23 23 H 1.09000 * 109.47571 * 30.00651 * 1 2 3 24 24 H 1.09001 * 109.46651 * 150.00477 * 1 2 3 25 25 H 1.08997 * 109.47499 * 29.99141 * 3 2 1 26 26 H 1.08994 * 109.47532 * 150.00009 * 3 2 1 27 27 H 0.96996 * 119.99947 * 180.02562 * 7 6 4 28 28 H 1.08001 * 119.99961 * 7.22766 * 14 12 2 29 29 H 1.08000 * 120.00099 * 195.37919 * 15 14 12 30 30 H 1.08997 * 110.50917 * 359.97438 * 18 16 15 31 31 H 1.08997 * 110.50635 * 122.70899 * 18 16 15 32 32 H 1.09005 * 110.37296 * 142.81515 * 19 18 16 33 33 H 1.09005 * 110.37107 * 265.03296 * 19 18 16 34 34 H 1.09003 * 110.36974 * 281.66990 * 21 20 19 35 35 H 1.09006 * 110.37010 * 159.34419 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7037 -1.4209 5 1 2.0981 1.0956 -2.2417 6 6 3.1268 2.8774 -1.6729 7 7 3.5541 3.6176 -0.6734 8 14 3.4388 3.4162 -3.4341 9 1 2.1415 3.5939 -4.1345 10 1 4.1812 4.7023 -3.4342 11 1 4.2413 2.3808 -4.1337 12 6 2.1389 -1.1672 0.0005 13 8 3.3551 -1.1671 0.0001 14 6 1.4034 -2.4412 0.0005 15 6 2.0605 -3.5882 0.1459 16 6 3.4823 -3.5841 0.6454 17 1 3.7461 -2.6012 1.0358 18 6 4.4537 -3.9969 -0.4831 19 6 5.1228 -5.2833 0.0495 20 8 4.1846 -5.8173 1.0090 21 6 3.6795 -4.6700 1.7262 22 1 -0.3634 0.0001 1.0276 23 1 -0.3634 0.8899 -0.5139 24 1 -0.3633 -0.8901 -0.5138 25 1 1.6084 2.0284 0.5137 26 1 3.1498 1.1385 0.5138 27 1 4.0309 4.4434 -0.8507 28 1 0.3299 -2.4449 -0.1176 29 1 1.5766 -4.5224 -0.0980 30 1 3.9054 -4.2043 -1.4020 31 1 5.1991 -3.2191 -0.6487 32 1 5.2806 -5.9932 -0.7625 33 1 6.0699 -5.0457 0.5341 34 1 4.4042 -4.3382 2.4698 35 1 2.7284 -4.9087 2.2023 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001142405415.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:02 Heat of formation + Delta-G solvation = -76.525186 kcal Electronic energy + Delta-G solvation = -17170.067285 eV Core-core repulsion = 14361.120462 eV Total energy + Delta-G solvation = -2808.946823 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.01707 -39.97410 -36.74314 -35.05306 -34.70505 -31.91385 -30.19679 -29.40359 -27.33582 -25.63217 -23.82674 -22.87658 -21.59456 -19.48295 -18.69194 -18.08916 -17.20341 -17.08338 -16.72394 -16.22089 -15.93767 -15.71682 -14.76573 -14.55706 -14.12851 -13.91375 -13.80055 -13.47532 -13.44822 -13.13329 -12.84154 -12.72436 -12.53285 -12.39979 -12.19927 -11.84275 -11.75094 -11.68320 -10.84437 -10.65476 -10.38849 -10.01507 -9.33038 -8.22913 -6.38452 0.47065 1.35566 1.39490 1.47175 2.29666 2.48255 2.53992 3.05926 3.06789 3.70228 3.83442 3.90886 4.00674 4.25372 4.28735 4.41541 4.57568 4.58810 4.73558 4.77344 4.83381 4.85226 4.96299 5.00441 5.12227 5.19747 5.24795 5.33762 5.56406 5.65776 5.84937 5.87694 6.05629 6.69464 6.83949 7.27902 7.52585 8.83489 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.030413 B = 0.005798 C = 0.005266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.436899 B = 4828.476756 C = 5316.104969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.609 5.609 3 C 0.260 3.740 4 C -0.543 4.543 5 H 0.051 0.949 6 C 0.008 3.992 7 N -0.929 5.929 8 Si 0.967 3.033 9 H -0.260 1.260 10 H -0.277 1.277 11 H -0.278 1.278 12 C 0.518 3.482 13 O -0.584 6.584 14 C -0.219 4.219 15 C -0.045 4.045 16 C -0.128 4.128 17 H 0.095 0.905 18 C -0.134 4.134 19 C 0.047 3.953 20 O -0.390 6.390 21 C 0.056 3.944 22 H 0.068 0.932 23 H 0.063 0.937 24 H 0.096 0.904 25 H 0.021 0.979 26 H -0.001 1.001 27 H 0.267 0.733 28 H 0.164 0.836 29 H 0.160 0.840 30 H 0.073 0.927 31 H 0.059 0.941 32 H 0.109 0.891 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.319 -15.765 1.827 16.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.340 5.340 3 C 0.138 3.862 4 C -0.581 4.581 5 H 0.070 0.930 6 C -0.191 4.191 7 N -0.569 5.569 8 Si 0.791 3.209 9 H -0.185 1.185 10 H -0.202 1.202 11 H -0.204 1.204 12 C 0.310 3.690 13 O -0.467 6.467 14 C -0.240 4.240 15 C -0.065 4.065 16 C -0.146 4.146 17 H 0.113 0.887 18 C -0.172 4.172 19 C -0.029 4.029 20 O -0.309 6.309 21 C -0.021 4.021 22 H 0.087 0.913 23 H 0.082 0.918 24 H 0.114 0.886 25 H 0.039 0.961 26 H 0.017 0.983 27 H 0.076 0.924 28 H 0.181 0.819 29 H 0.177 0.823 30 H 0.092 0.908 31 H 0.078 0.922 32 H 0.127 0.873 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -4.703 -15.770 1.913 16.567 hybrid contribution 0.490 1.238 -0.766 1.537 sum -4.213 -14.532 1.147 15.173 Atomic orbital electron populations 1.21949 0.78077 1.03895 1.02452 1.48147 1.08367 1.06499 1.70960 1.18732 0.91085 0.80435 0.95953 1.21669 1.36898 1.06564 0.93015 0.93041 1.25860 0.94873 0.96382 1.01993 1.70043 1.38895 1.14810 1.33109 0.85474 0.78847 0.77379 0.79150 1.18486 1.20224 1.20356 1.19415 0.87357 0.85510 0.76739 1.90620 1.15845 1.87712 1.52557 1.22906 1.01547 0.90731 1.08787 1.23793 0.94477 0.98161 0.90065 1.22208 0.94002 1.01678 0.96715 0.88688 1.22767 0.98302 0.97526 0.98619 1.23531 0.92269 0.94748 0.92354 1.89050 1.59970 1.30107 1.51754 1.23560 1.00300 0.84531 0.93681 0.91310 0.91790 0.88602 0.96076 0.98298 0.92369 0.81888 0.82290 0.90826 0.92209 0.87254 0.91832 0.91840 0.87211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.38 10.20 127.77 1.30 3.68 16 2 N -0.61 -26.37 2.86 -855.44 -2.44 -28.82 16 3 C 0.26 14.25 5.16 85.64 0.44 14.69 16 4 C -0.54 -31.75 9.39 25.60 0.24 -31.50 16 5 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 6 C 0.01 0.46 5.46 84.65 0.46 0.92 16 7 N -0.93 -56.70 13.29 21.45 0.28 -56.41 16 8 Si 0.97 45.21 29.54 68.60 2.03 47.24 16 9 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 10 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 11 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 12 C 0.52 21.67 7.41 86.57 0.64 22.31 16 13 O -0.58 -29.28 12.81 -4.08 -0.05 -29.33 16 14 C -0.22 -6.26 9.23 23.43 0.22 -6.04 16 15 C -0.05 -1.14 8.56 24.52 0.21 -0.93 16 16 C -0.13 -3.70 2.52 -10.52 -0.03 -3.72 16 17 H 0.10 3.57 5.17 -2.48 -0.01 3.56 16 18 C -0.13 -3.76 6.59 31.61 0.21 -3.55 16 19 C 0.05 1.08 7.63 72.48 0.55 1.63 16 20 O -0.39 -9.73 11.65 -148.98 -1.74 -11.46 16 21 C 0.06 1.31 7.17 72.48 0.52 1.83 16 22 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 23 H 0.06 2.05 8.07 -2.39 -0.02 2.03 16 24 H 0.10 2.19 6.02 -2.39 -0.01 2.17 16 25 H 0.02 1.18 8.07 -2.39 -0.02 1.16 16 26 H 0.00 -0.07 7.42 -2.39 -0.02 -0.09 16 27 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 28 H 0.16 3.34 6.16 -2.91 -0.02 3.32 16 29 H 0.16 2.83 8.06 -2.91 -0.02 2.81 16 30 H 0.07 1.97 7.73 -2.39 -0.02 1.96 16 31 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.11 1.99 8.14 -2.38 -0.02 1.97 16 33 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 34 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.11 2.11 7.86 -2.38 -0.02 2.09 16 Total: -1.00 -73.23 292.17 3.92 -69.32 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: 1.07 Total: 10.16 kcal Atomic # 6 Polarization: -5.46 SS G_CDS: 4.77 Total: -0.69 kcal Atomic # 7 Polarization: -83.07 SS G_CDS: -2.16 Total: -85.23 kcal Atomic # 8 Polarization: -39.00 SS G_CDS: -1.79 Total: -40.79 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -73.23 3.92 -69.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142405415.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.208 kcal (2) G-P(sol) polarization free energy of solvation -73.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds