Wall clock time and date at job start Sun Mar 29 2020 22:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.46874 * 2 1 4 4 C 1.50696 * 109.47162 * 239.99957 * 2 1 3 5 5 H 1.07995 * 120.00536 * 240.00156 * 4 2 1 6 6 C 1.37883 * 120.00021 * 60.00187 * 4 2 1 7 7 N 1.31519 * 119.99580 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00390 * 180.02562 * 6 4 2 9 9 H 1.48491 * 109.47176 * 89.99518 * 8 6 4 10 10 H 1.48493 * 109.47152 * 210.00458 * 8 6 4 11 11 H 1.48504 * 109.46776 * 329.99885 * 8 6 4 12 12 N 1.46502 * 109.47004 * 120.00321 * 2 1 3 13 13 C 1.34780 * 119.99851 * 275.27674 * 12 2 1 14 14 O 1.21614 * 119.99897 * 359.72066 * 13 12 2 15 15 C 1.47099 * 119.99842 * 179.72350 * 13 12 2 16 16 C 1.32999 * 119.99757 * 186.58417 * 15 13 12 17 17 C 1.50694 * 120.00018 * 12.12728 * 16 15 13 18 18 H 1.09008 * 110.45911 * 11.96053 * 17 16 15 19 19 C 1.54507 * 110.51090 * 249.35945 * 17 16 15 20 20 C 1.54478 * 104.06256 * 241.35551 * 19 17 16 21 21 O 1.44421 * 104.80584 * 23.97729 * 20 19 17 22 22 C 1.44430 * 105.27577 * 319.49060 * 21 20 19 23 23 H 1.08995 * 109.47247 * 299.99929 * 1 2 3 24 24 H 1.08997 * 109.47022 * 59.99690 * 1 2 3 25 25 H 1.08998 * 109.46874 * 179.97438 * 1 2 3 26 26 H 0.97003 * 119.99745 * 180.02562 * 7 6 4 27 27 H 0.97002 * 120.00076 * 94.99717 * 12 2 1 28 28 H 1.07996 * 120.00003 * 6.58804 * 15 13 12 29 29 H 1.08005 * 119.99825 * 192.12544 * 16 15 13 30 30 H 1.09001 * 110.51600 * 0.02562 * 19 17 16 31 31 H 1.09002 * 110.51557 * 122.70698 * 19 17 16 32 32 H 1.08998 * 110.37168 * 142.80966 * 20 19 17 33 33 H 1.08999 * 110.37473 * 265.14660 * 20 19 17 34 34 H 1.09000 * 110.37090 * 281.68142 * 22 21 20 35 35 H 1.08989 * 110.37632 * 159.33786 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6033 8 14 2.3214 -1.1202 -4.0080 9 1 1.3428 -2.1615 -4.4119 10 1 2.4867 -0.1412 -5.1122 11 1 3.6293 -1.7582 -3.7122 12 7 2.0184 -0.6907 1.1962 13 6 2.1418 -0.0197 2.3585 14 8 1.8526 1.1603 2.4132 15 6 2.6263 -0.7147 3.5611 16 6 2.6245 -0.0910 4.7357 17 6 1.8837 1.2115 4.8960 18 1 1.2401 1.3922 4.0351 19 6 2.8773 2.3798 5.0839 20 6 2.5343 2.9433 6.4807 21 8 1.9097 1.8442 7.1789 22 6 1.0580 1.2074 6.2016 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 0.7082 1.1610 -3.4844 27 1 2.2490 -1.6319 1.1526 28 1 2.9835 -1.7314 3.4900 29 1 3.1540 -0.5180 5.5747 30 1 3.9043 2.0154 5.0603 31 1 2.7232 3.1392 4.3172 32 1 3.4420 3.2545 6.9977 33 1 1.8410 3.7798 6.3927 34 1 0.1383 1.7777 6.0707 35 1 0.8317 0.1851 6.5042 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001145053706.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:56 Heat of formation + Delta-G solvation = -65.976134 kcal Electronic energy + Delta-G solvation = -17036.262342 eV Core-core repulsion = 14227.772961 eV Total energy + Delta-G solvation = -2808.489382 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.70229 -38.61377 -35.11985 -33.69180 -32.41981 -30.79357 -29.21367 -28.32177 -25.27735 -23.50959 -22.45922 -21.03161 -19.97528 -19.22691 -16.95244 -16.44433 -15.90784 -15.61626 -15.19832 -14.86013 -14.28201 -13.82349 -13.65951 -13.24877 -12.76171 -12.46408 -12.36652 -11.79414 -11.60956 -11.37843 -11.10920 -11.02842 -10.91700 -10.72593 -10.53859 -10.31791 -10.23503 -9.84657 -9.11724 -9.04267 -8.70031 -8.50724 -7.87946 -6.13881 -4.23084 1.68670 3.23276 3.30221 3.32445 3.91952 4.05720 4.16129 4.40355 4.79149 4.90281 5.01625 5.18524 5.24266 5.31185 5.46169 5.57927 5.72760 5.75464 5.78194 5.91096 6.20064 6.33975 6.48435 6.70780 6.82169 6.90576 6.98516 7.13760 7.47011 7.56336 7.69158 7.90597 8.13686 8.67065 8.77068 9.13069 9.44750 10.92099 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.054804 B = 0.004685 C = 0.004596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.784496 B = 5974.939000 C = 6090.604679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.263 3.737 3 H 0.049 0.951 4 C -0.534 4.534 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.902 3.098 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.702 5.702 13 C 0.528 3.472 14 O -0.551 6.551 15 C -0.208 4.208 16 C -0.069 4.069 17 C -0.126 4.126 18 H 0.143 0.857 19 C -0.133 4.133 20 C 0.043 3.957 21 O -0.383 6.383 22 C 0.049 3.951 23 H 0.014 0.986 24 H 0.090 0.910 25 H 0.026 0.974 26 H 0.264 0.736 27 H 0.389 0.611 28 H 0.123 0.877 29 H 0.119 0.881 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.057 0.943 34 H 0.061 0.939 35 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.171 -1.166 13.602 13.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.161 3.839 3 H 0.067 0.933 4 C -0.573 4.573 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.348 5.348 13 C 0.316 3.684 14 O -0.434 6.434 15 C -0.229 4.229 16 C -0.089 4.089 17 C -0.144 4.144 18 H 0.160 0.840 19 C -0.171 4.171 20 C -0.034 4.034 21 O -0.302 6.302 22 C -0.027 4.027 23 H 0.033 0.967 24 H 0.108 0.892 25 H 0.045 0.955 26 H 0.074 0.926 27 H 0.222 0.778 28 H 0.141 0.859 29 H 0.137 0.863 30 H 0.088 0.912 31 H 0.101 0.899 32 H 0.105 0.895 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.906 -0.274 13.650 13.785 hybrid contribution 0.479 -1.032 -1.139 1.610 sum 2.385 -1.306 12.511 12.803 Atomic orbital electron populations 1.22071 0.98430 0.99100 1.00871 1.18749 0.91012 0.94026 0.80103 0.93312 1.21227 1.32445 1.13209 0.90381 0.92104 1.24891 0.94813 0.94934 0.99068 1.69905 1.35893 1.22455 1.23878 0.86444 0.79172 0.79278 0.82191 1.20541 1.21055 1.19859 1.46516 1.64197 1.13518 1.10609 1.18575 0.78640 0.87054 0.84133 1.90552 1.52301 1.16096 1.84416 1.22888 1.05544 1.00433 0.93992 1.23449 0.93726 0.95189 0.96505 1.22447 0.98318 0.92794 1.00821 0.84042 1.22800 0.99657 0.97810 0.96826 1.23466 0.97456 0.89966 0.92479 1.89061 1.61242 1.44978 1.34898 1.23569 0.93378 0.98146 0.87635 0.96661 0.89168 0.95511 0.92580 0.77843 0.85904 0.86334 0.91187 0.89912 0.89504 0.92442 0.92039 0.89382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.61 9.26 37.16 0.34 -3.26 16 2 C 0.26 6.64 2.56 -69.08 -0.18 6.46 16 3 H 0.05 1.42 7.58 -51.93 -0.39 1.02 16 4 C -0.53 -14.11 8.73 -34.44 -0.30 -14.41 16 5 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -24.79 11.32 55.43 0.63 -24.16 16 8 Si 0.90 20.55 29.54 -169.99 -5.02 15.53 16 9 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 11 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 12 N -0.70 -14.52 5.07 -56.12 -0.28 -14.81 16 13 C 0.53 10.31 7.56 -12.66 -0.10 10.22 16 14 O -0.55 -12.28 12.80 5.26 0.07 -12.22 16 15 C -0.21 -3.05 10.01 -37.81 -0.38 -3.43 16 16 C -0.07 -0.92 8.58 -36.13 -0.31 -1.23 16 17 C -0.13 -1.80 2.57 -90.21 -0.23 -2.04 16 18 H 0.14 2.48 4.91 -52.71 -0.26 2.22 16 19 C -0.13 -1.78 6.68 -25.16 -0.17 -1.94 16 20 C 0.04 0.50 7.63 37.93 0.29 0.79 16 21 O -0.38 -5.17 11.65 -35.23 -0.41 -5.58 16 22 C 0.05 0.62 7.17 37.93 0.27 0.89 16 23 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 24 H 0.09 2.42 6.07 -51.93 -0.32 2.11 16 25 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 27 H 0.39 6.99 8.52 -40.82 -0.35 6.64 16 28 H 0.12 1.46 8.06 -52.49 -0.42 1.03 16 29 H 0.12 1.32 8.06 -52.48 -0.42 0.89 16 30 H 0.07 0.91 7.73 -51.93 -0.40 0.50 16 31 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.09 0.99 7.86 -51.94 -0.41 0.58 16 LS Contribution 291.44 15.07 4.39 4.39 Total: -1.00 -29.67 291.44 -6.53 -36.20 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -5.05 Total: 6.92 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: -0.85 Total: -6.28 kcal Atomic # 7 Polarization: -39.31 SS G_CDS: 0.34 Total: -38.97 kcal Atomic # 8 Polarization: -17.46 SS G_CDS: -0.34 Total: -17.80 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -29.67 -6.53 -36.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001145053706.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.774 kcal (2) G-P(sol) polarization free energy of solvation -29.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds