Wall clock time and date at job start Sun Mar 29 2020 22:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.46874 * 2 1 4 4 C 1.50696 * 109.47162 * 239.99957 * 2 1 3 5 5 H 1.07995 * 120.00536 * 240.00156 * 4 2 1 6 6 C 1.37883 * 120.00021 * 60.00187 * 4 2 1 7 7 N 1.31519 * 119.99580 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00390 * 180.02562 * 6 4 2 9 9 H 1.48491 * 109.47176 * 89.99518 * 8 6 4 10 10 H 1.48493 * 109.47152 * 210.00458 * 8 6 4 11 11 H 1.48504 * 109.46776 * 329.99885 * 8 6 4 12 12 N 1.46502 * 109.47004 * 120.00321 * 2 1 3 13 13 C 1.34780 * 119.99851 * 275.27674 * 12 2 1 14 14 O 1.21614 * 119.99897 * 359.72066 * 13 12 2 15 15 C 1.47099 * 119.99842 * 179.72350 * 13 12 2 16 16 C 1.32999 * 119.99757 * 186.58417 * 15 13 12 17 17 C 1.50694 * 120.00018 * 12.12728 * 16 15 13 18 18 H 1.09008 * 110.45911 * 11.96053 * 17 16 15 19 19 C 1.54507 * 110.51090 * 249.35945 * 17 16 15 20 20 C 1.54478 * 104.06256 * 241.35551 * 19 17 16 21 21 O 1.44421 * 104.80584 * 23.97729 * 20 19 17 22 22 C 1.44430 * 105.27577 * 319.49060 * 21 20 19 23 23 H 1.08995 * 109.47247 * 299.99929 * 1 2 3 24 24 H 1.08997 * 109.47022 * 59.99690 * 1 2 3 25 25 H 1.08998 * 109.46874 * 179.97438 * 1 2 3 26 26 H 0.97003 * 119.99745 * 180.02562 * 7 6 4 27 27 H 0.97002 * 120.00076 * 94.99717 * 12 2 1 28 28 H 1.07996 * 120.00003 * 6.58804 * 15 13 12 29 29 H 1.08005 * 119.99825 * 192.12544 * 16 15 13 30 30 H 1.09001 * 110.51600 * 0.02562 * 19 17 16 31 31 H 1.09002 * 110.51557 * 122.70698 * 19 17 16 32 32 H 1.08998 * 110.37168 * 142.80966 * 20 19 17 33 33 H 1.08999 * 110.37473 * 265.14660 * 20 19 17 34 34 H 1.09000 * 110.37090 * 281.68142 * 22 21 20 35 35 H 1.08989 * 110.37632 * 159.33786 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6033 8 14 2.3214 -1.1202 -4.0080 9 1 1.3428 -2.1615 -4.4119 10 1 2.4867 -0.1412 -5.1122 11 1 3.6293 -1.7582 -3.7122 12 7 2.0184 -0.6907 1.1962 13 6 2.1418 -0.0197 2.3585 14 8 1.8526 1.1603 2.4132 15 6 2.6263 -0.7147 3.5611 16 6 2.6245 -0.0910 4.7357 17 6 1.8837 1.2115 4.8960 18 1 1.2401 1.3922 4.0351 19 6 2.8773 2.3798 5.0839 20 6 2.5343 2.9433 6.4807 21 8 1.9097 1.8442 7.1789 22 6 1.0580 1.2074 6.2016 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 0.7082 1.1610 -3.4844 27 1 2.2490 -1.6319 1.1526 28 1 2.9835 -1.7314 3.4900 29 1 3.1540 -0.5180 5.5747 30 1 3.9043 2.0154 5.0603 31 1 2.7232 3.1392 4.3172 32 1 3.4420 3.2545 6.9977 33 1 1.8410 3.7798 6.3927 34 1 0.1383 1.7777 6.0707 35 1 0.8317 0.1851 6.5042 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001145053706.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:56 Heat of formation + Delta-G solvation = -86.256648 kcal Electronic energy + Delta-G solvation = -17037.141771 eV Core-core repulsion = 14227.772961 eV Total energy + Delta-G solvation = -2809.368811 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.99464 -39.93675 -36.88451 -34.97448 -34.30957 -32.02613 -30.79016 -29.57844 -27.34630 -24.87621 -23.58744 -22.41165 -21.54765 -20.75006 -18.58809 -17.77209 -17.22271 -17.01005 -16.76860 -16.09096 -15.89113 -15.36743 -14.91641 -14.65129 -14.36234 -13.97515 -13.65869 -13.52288 -13.01590 -12.90872 -12.74365 -12.68123 -12.37874 -12.28106 -12.13534 -11.93918 -11.71449 -11.10273 -10.85511 -10.64167 -10.34126 -10.04256 -9.62139 -8.17998 -6.35409 0.48816 1.44719 1.45344 1.55963 2.36554 2.47097 2.75478 3.07995 3.12622 3.73222 3.86741 3.98615 4.12940 4.27422 4.32748 4.59000 4.61293 4.75453 4.78188 4.83987 4.87054 4.92650 5.09486 5.12064 5.23997 5.33883 5.41194 5.58762 5.71680 5.72704 5.89149 5.94820 6.11394 6.73038 7.03264 7.32911 7.61336 8.88246 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.054804 B = 0.004685 C = 0.004596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.784496 B = 5974.939000 C = 6090.604679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.270 3.730 3 H -0.001 1.001 4 C -0.548 4.548 5 H 0.072 0.928 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.972 3.028 9 H -0.271 1.271 10 H -0.286 1.286 11 H -0.264 1.264 12 N -0.703 5.703 13 C 0.519 3.481 14 O -0.587 6.587 15 C -0.217 4.217 16 C -0.046 4.046 17 C -0.135 4.135 18 H 0.107 0.893 19 C -0.133 4.133 20 C 0.046 3.954 21 O -0.392 6.392 22 C 0.054 3.946 23 H 0.013 0.987 24 H 0.065 0.935 25 H 0.038 0.962 26 H 0.265 0.735 27 H 0.404 0.596 28 H 0.159 0.841 29 H 0.156 0.844 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.109 0.891 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.223 -2.939 14.868 15.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.167 3.833 3 H 0.017 0.983 4 C -0.586 4.586 5 H 0.090 0.910 6 C -0.186 4.186 7 N -0.556 5.556 8 Si 0.797 3.203 9 H -0.196 1.196 10 H -0.212 1.212 11 H -0.189 1.189 12 N -0.351 5.351 13 C 0.310 3.690 14 O -0.471 6.471 15 C -0.238 4.238 16 C -0.066 4.066 17 C -0.154 4.154 18 H 0.125 0.875 19 C -0.171 4.171 20 C -0.030 4.030 21 O -0.311 6.311 22 C -0.022 4.022 23 H 0.032 0.968 24 H 0.084 0.916 25 H 0.057 0.943 26 H 0.074 0.926 27 H 0.239 0.761 28 H 0.177 0.823 29 H 0.174 0.826 30 H 0.093 0.907 31 H 0.082 0.918 32 H 0.127 0.873 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 2.968 -2.074 14.945 15.377 hybrid contribution 0.132 -0.380 -1.455 1.509 sum 3.100 -2.455 13.490 14.058 Atomic orbital electron populations 1.21882 0.98328 0.99330 0.99537 1.18316 0.91056 0.91923 0.82053 0.98342 1.21564 1.32571 1.13529 0.90935 0.90992 1.25803 0.94878 0.95561 1.02334 1.70056 1.37030 1.23952 1.24587 0.85337 0.78969 0.78038 0.77951 1.19635 1.21212 1.18856 1.46274 1.64813 1.14160 1.09836 1.19431 0.77636 0.86865 0.85057 1.90569 1.53529 1.17931 1.85105 1.22818 1.07087 1.01988 0.91903 1.23769 0.91866 0.93921 0.97038 1.22378 0.98517 0.93989 1.00480 0.87549 1.22772 0.99697 0.97158 0.97507 1.23548 0.98507 0.89614 0.91358 1.89052 1.61404 1.45436 1.35184 1.23564 0.92954 0.99235 0.86481 0.96801 0.91611 0.94279 0.92566 0.76097 0.82329 0.82644 0.90657 0.91848 0.87270 0.91852 0.91923 0.87580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.70 9.26 71.98 0.67 -6.04 16 2 C 0.27 14.04 2.56 44.25 0.11 14.15 16 3 H 0.00 -0.08 7.58 -2.39 -0.02 -0.10 16 4 C -0.55 -29.08 8.73 25.60 0.22 -28.86 16 5 H 0.07 3.57 7.74 -2.91 -0.02 3.55 16 6 C 0.01 0.76 5.30 84.66 0.45 1.21 16 7 N -0.92 -52.74 11.32 21.45 0.24 -52.49 16 8 Si 0.97 41.94 29.54 68.60 2.03 43.97 16 9 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 10 H -0.29 -12.33 7.11 99.48 0.71 -11.62 16 11 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 12 N -0.70 -29.16 5.07 -449.70 -2.28 -31.43 16 13 C 0.52 20.35 7.56 86.57 0.65 21.00 16 14 O -0.59 -27.18 12.80 -4.08 -0.05 -27.24 16 15 C -0.22 -5.92 10.01 23.43 0.23 -5.68 16 16 C -0.05 -1.12 8.58 24.52 0.21 -0.91 16 17 C -0.14 -3.75 2.57 -10.53 -0.03 -3.78 16 18 H 0.11 3.83 4.91 -14.82 -0.07 3.75 16 19 C -0.13 -3.46 6.68 31.61 0.21 -3.25 16 20 C 0.05 0.99 7.63 72.48 0.55 1.55 16 21 O -0.39 -9.60 11.65 -148.98 -1.74 -11.34 16 22 C 0.05 1.26 7.17 72.49 0.52 1.78 16 23 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 24 H 0.07 3.66 6.07 -2.39 -0.01 3.65 16 25 H 0.04 1.82 8.14 -2.39 -0.02 1.81 16 26 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16 27 H 0.40 14.09 8.52 -92.71 -0.79 13.30 16 28 H 0.16 3.16 8.06 -2.91 -0.02 3.13 16 29 H 0.16 2.71 8.06 -2.91 -0.02 2.68 16 30 H 0.07 1.84 7.73 -2.39 -0.02 1.82 16 31 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.11 2.08 7.86 -2.39 -0.02 2.06 16 Total: -1.00 -65.68 291.44 2.24 -63.44 By element: Atomic # 1 Polarization: 23.68 SS G_CDS: 0.23 Total: 23.91 kcal Atomic # 6 Polarization: -12.62 SS G_CDS: 3.81 Total: -8.82 kcal Atomic # 7 Polarization: -81.89 SS G_CDS: -2.04 Total: -83.93 kcal Atomic # 8 Polarization: -36.78 SS G_CDS: -1.79 Total: -38.57 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal Total: -65.68 2.24 -63.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001145053706.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.817 kcal (2) G-P(sol) polarization free energy of solvation -65.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds