Wall clock time and date at job start Sun Mar 29 2020 22:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.46943 * 2 1 4 4 C 1.50702 * 109.47349 * 239.99820 * 2 1 3 5 5 H 1.07996 * 120.00092 * 246.46121 * 4 2 1 6 6 C 1.37876 * 119.99785 * 66.45354 * 4 2 1 7 7 N 1.31523 * 120.00158 * 14.68712 * 6 4 2 8 8 Si 1.86800 * 120.00101 * 194.68407 * 6 4 2 9 9 H 1.48493 * 109.47374 * 94.97932 * 8 6 4 10 10 H 1.48504 * 109.47118 * 214.98442 * 8 6 4 11 11 H 1.48503 * 109.47106 * 334.97813 * 8 6 4 12 12 N 1.46498 * 109.47353 * 119.99521 * 2 1 3 13 13 C 1.34773 * 120.00248 * 275.00523 * 12 2 1 14 14 O 1.21614 * 120.00120 * 359.97438 * 13 12 2 15 15 C 1.47101 * 119.99993 * 180.02562 * 13 12 2 16 16 C 1.32993 * 120.00285 * 174.04818 * 15 13 12 17 17 C 1.50708 * 119.99722 * 340.86595 * 16 15 13 18 18 H 1.09000 * 110.80356 * 346.72963 * 17 16 15 19 19 C 1.54811 * 110.90303 * 110.35752 * 17 16 15 20 20 C 1.54104 * 104.18366 * 139.11467 * 19 17 16 21 21 O 1.43740 * 107.29259 * 2.02508 * 20 19 17 22 22 C 1.44372 * 106.97805 * 333.48890 * 21 20 19 23 23 H 1.08999 * 109.47031 * 61.85632 * 1 2 3 24 24 H 1.08998 * 109.46557 * 181.85839 * 1 2 3 25 25 H 1.09000 * 109.46779 * 301.85561 * 1 2 3 26 26 H 0.96997 * 119.99802 * 180.02562 * 7 6 4 27 27 H 0.97006 * 119.99308 * 95.00008 * 12 2 1 28 28 H 1.07998 * 120.00119 * 354.04250 * 15 13 12 29 29 H 1.08000 * 120.00185 * 160.86663 * 16 15 13 30 30 H 1.08998 * 110.49281 * 20.43550 * 19 17 16 31 31 H 1.09000 * 110.48288 * 257.78658 * 19 17 16 32 32 H 1.09004 * 109.87910 * 121.45333 * 20 19 17 33 33 H 1.08999 * 109.87576 * 242.60256 * 20 19 17 34 34 H 1.09003 * 110.62020 * 281.55624 * 22 21 20 35 35 H 1.09002 * 110.62154 * 158.56453 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5646 -1.6453 -1.1348 6 6 1.8125 -0.1670 -2.4783 7 7 1.4316 1.0868 -2.5918 8 14 2.0556 -1.2113 -4.0080 9 1 0.7538 -1.7935 -4.4219 10 1 2.5908 -0.3653 -5.1050 11 1 3.0157 -2.3051 -3.7131 12 7 2.0184 -0.6905 1.1962 13 6 2.1471 -0.0181 2.3571 14 8 1.8582 1.1619 2.4116 15 6 2.6380 -0.7114 3.5581 16 6 2.8777 -0.0243 4.6713 17 6 3.0698 1.4691 4.6083 18 1 3.2156 1.7977 3.5793 19 6 1.8754 2.2076 5.2601 20 6 2.5286 3.3577 6.0510 21 8 3.9446 3.2892 5.8136 22 6 4.2541 1.9134 5.5040 23 1 -0.3633 0.4847 -0.9062 24 1 -0.3632 -1.0271 0.0333 25 1 -0.3633 0.5424 0.8729 26 1 1.2766 1.4690 -3.4697 27 1 2.2491 -1.6317 1.1526 28 1 2.8038 -1.7783 3.5358 29 1 2.9346 -0.5366 5.6203 30 1 1.3354 1.5408 5.9323 31 1 1.2073 2.6023 4.4947 32 1 2.1402 4.3147 5.7024 33 1 2.3250 3.2382 7.1151 34 1 4.2930 1.3145 6.4139 35 1 5.1950 1.8451 4.9579 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001145053709.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:58 Heat of formation + Delta-G solvation = -69.932033 kcal Electronic energy + Delta-G solvation = -17027.437643 eV Core-core repulsion = 14218.776721 eV Total energy + Delta-G solvation = -2808.660922 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.63273 -38.59914 -35.09982 -33.80479 -32.37543 -30.80051 -29.29036 -28.41504 -25.22732 -23.43073 -22.43336 -21.14021 -20.05169 -19.13266 -17.00639 -16.50599 -15.90933 -15.56321 -15.05636 -14.85847 -14.15636 -13.98352 -13.64356 -13.14425 -12.86556 -12.45567 -12.37888 -11.92772 -11.70131 -11.39172 -11.09588 -11.04702 -11.00518 -10.78043 -10.59154 -10.37018 -10.17962 -9.66205 -9.18392 -9.11369 -8.71164 -8.46192 -7.88266 -6.16994 -4.19337 1.59165 3.24287 3.32008 3.33640 3.92329 4.00377 4.18080 4.41509 4.80959 4.89398 5.06902 5.14764 5.16584 5.31602 5.34817 5.50426 5.67068 5.77023 5.78731 5.90172 6.24013 6.37383 6.41272 6.70922 6.77772 6.85903 6.92567 7.04019 7.41235 7.57249 7.66209 7.83502 8.04811 8.69209 8.80021 9.14482 9.45652 10.92091 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.043524 B = 0.004881 C = 0.004780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.167966 B = 5735.330282 C = 5856.320694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.260 3.740 3 H 0.058 0.942 4 C -0.540 4.540 5 H 0.061 0.939 6 C 0.071 3.929 7 N -0.878 5.878 8 Si 0.895 3.105 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.273 1.273 12 N -0.703 5.703 13 C 0.526 3.474 14 O -0.549 6.549 15 C -0.202 4.202 16 C -0.075 4.075 17 C -0.107 4.107 18 H 0.126 0.874 19 C -0.137 4.137 20 C 0.047 3.953 21 O -0.380 6.380 22 C 0.053 3.947 23 H 0.066 0.934 24 H 0.029 0.971 25 H 0.020 0.980 26 H 0.265 0.735 27 H 0.389 0.611 28 H 0.125 0.875 29 H 0.120 0.880 30 H 0.067 0.933 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.053 0.947 34 H 0.056 0.944 35 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.054 -2.641 14.526 14.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.158 3.842 3 H 0.076 0.924 4 C -0.578 4.578 5 H 0.080 0.920 6 C -0.133 4.133 7 N -0.514 5.514 8 Si 0.722 3.278 9 H -0.205 1.205 10 H -0.212 1.212 11 H -0.198 1.198 12 N -0.349 5.349 13 C 0.313 3.687 14 O -0.431 6.431 15 C -0.223 4.223 16 C -0.095 4.095 17 C -0.125 4.125 18 H 0.144 0.856 19 C -0.175 4.175 20 C -0.030 4.030 21 O -0.299 6.299 22 C -0.024 4.024 23 H 0.085 0.915 24 H 0.049 0.951 25 H 0.040 0.960 26 H 0.074 0.926 27 H 0.221 0.779 28 H 0.143 0.857 29 H 0.138 0.862 30 H 0.086 0.914 31 H 0.106 0.894 32 H 0.100 0.900 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.931 -1.473 14.377 14.581 hybrid contribution -0.058 -1.389 -0.917 1.666 sum 1.873 -2.862 13.460 13.887 Atomic orbital electron populations 1.22017 0.99019 0.98754 1.00050 1.18769 0.90377 0.94795 0.80216 0.92415 1.21155 1.38283 1.07866 0.90480 0.92041 1.24882 0.94891 0.94513 0.99033 1.70030 1.45613 1.11447 1.24323 0.86546 0.78372 0.80369 0.82513 1.20505 1.21169 1.19793 1.46478 1.64448 1.13594 1.10405 1.18560 0.79477 0.86930 0.83723 1.90673 1.51846 1.15565 1.85021 1.22944 1.04057 1.00562 0.94734 1.23336 0.94000 0.95166 0.96986 1.22279 0.94263 0.92361 1.03567 0.85646 1.22830 0.98505 0.96573 0.99565 1.23191 0.81459 0.99781 0.98557 1.88845 1.23262 1.26857 1.90934 1.23639 0.98652 0.82734 0.97380 0.91493 0.95147 0.96047 0.92565 0.77915 0.85743 0.86210 0.91390 0.89380 0.89981 0.92876 0.92602 0.89030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.38 9.36 37.16 0.35 -3.04 16 2 C 0.26 6.58 2.43 -69.08 -0.17 6.42 16 3 H 0.06 1.70 7.45 -51.93 -0.39 1.32 16 4 C -0.54 -14.31 8.63 -34.44 -0.30 -14.60 16 5 H 0.06 1.56 7.76 -52.49 -0.41 1.15 16 6 C 0.07 1.92 5.11 -17.82 -0.09 1.83 16 7 N -0.88 -25.07 12.50 55.43 0.69 -24.38 16 8 Si 0.89 20.58 29.56 -169.99 -5.03 15.56 16 9 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 10 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 12 N -0.70 -14.51 5.07 -56.12 -0.28 -14.80 16 13 C 0.53 10.27 7.49 -12.67 -0.09 10.17 16 14 O -0.55 -12.43 12.72 5.27 0.07 -12.36 16 15 C -0.20 -2.89 9.99 -37.81 -0.38 -3.26 16 16 C -0.07 -0.95 8.77 -36.12 -0.32 -1.26 16 17 C -0.11 -1.53 2.43 -89.76 -0.22 -1.74 16 18 H 0.13 2.29 5.56 -51.93 -0.29 2.00 16 19 C -0.14 -1.83 6.39 -25.20 -0.16 -2.00 16 20 C 0.05 0.58 7.70 37.73 0.29 0.87 16 21 O -0.38 -5.53 11.52 -35.23 -0.41 -5.94 16 22 C 0.05 0.66 7.16 38.21 0.27 0.93 16 23 H 0.07 1.74 7.17 -51.93 -0.37 1.37 16 24 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 27 H 0.39 6.92 8.51 -40.82 -0.35 6.58 16 28 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 29 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 30 H 0.07 0.79 7.85 -51.93 -0.41 0.38 16 31 H 0.09 1.36 7.83 -51.93 -0.41 0.95 16 32 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.58 8.04 -51.93 -0.42 0.16 16 35 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 293.45 15.07 4.42 4.42 Total: -1.00 -30.55 293.45 -6.47 -37.03 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -5.13 Total: 6.16 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: -0.81 Total: -5.69 kcal Atomic # 7 Polarization: -39.58 SS G_CDS: 0.41 Total: -39.18 kcal Atomic # 8 Polarization: -17.96 SS G_CDS: -0.34 Total: -18.30 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.03 Total: 15.56 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -30.55 -6.47 -37.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001145053709.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.905 kcal (2) G-P(sol) polarization free energy of solvation -30.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds