Wall clock time and date at job start Sun Mar 29 2020 22:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.46943 * 2 1 4 4 C 1.50702 * 109.47349 * 239.99820 * 2 1 3 5 5 H 1.07996 * 120.00092 * 246.46121 * 4 2 1 6 6 C 1.37876 * 119.99785 * 66.45354 * 4 2 1 7 7 N 1.31523 * 120.00158 * 14.68712 * 6 4 2 8 8 Si 1.86800 * 120.00101 * 194.68407 * 6 4 2 9 9 H 1.48493 * 109.47374 * 94.97932 * 8 6 4 10 10 H 1.48504 * 109.47118 * 214.98442 * 8 6 4 11 11 H 1.48503 * 109.47106 * 334.97813 * 8 6 4 12 12 N 1.46498 * 109.47353 * 119.99521 * 2 1 3 13 13 C 1.34773 * 120.00248 * 275.00523 * 12 2 1 14 14 O 1.21614 * 120.00120 * 359.97438 * 13 12 2 15 15 C 1.47101 * 119.99993 * 180.02562 * 13 12 2 16 16 C 1.32993 * 120.00285 * 174.04818 * 15 13 12 17 17 C 1.50708 * 119.99722 * 340.86595 * 16 15 13 18 18 H 1.09000 * 110.80356 * 346.72963 * 17 16 15 19 19 C 1.54811 * 110.90303 * 110.35752 * 17 16 15 20 20 C 1.54104 * 104.18366 * 139.11467 * 19 17 16 21 21 O 1.43740 * 107.29259 * 2.02508 * 20 19 17 22 22 C 1.44372 * 106.97805 * 333.48890 * 21 20 19 23 23 H 1.08999 * 109.47031 * 61.85632 * 1 2 3 24 24 H 1.08998 * 109.46557 * 181.85839 * 1 2 3 25 25 H 1.09000 * 109.46779 * 301.85561 * 1 2 3 26 26 H 0.96997 * 119.99802 * 180.02562 * 7 6 4 27 27 H 0.97006 * 119.99308 * 95.00008 * 12 2 1 28 28 H 1.07998 * 120.00119 * 354.04250 * 15 13 12 29 29 H 1.08000 * 120.00185 * 160.86663 * 16 15 13 30 30 H 1.08998 * 110.49281 * 20.43550 * 19 17 16 31 31 H 1.09000 * 110.48288 * 257.78658 * 19 17 16 32 32 H 1.09004 * 109.87910 * 121.45333 * 20 19 17 33 33 H 1.08999 * 109.87576 * 242.60256 * 20 19 17 34 34 H 1.09003 * 110.62020 * 281.55624 * 22 21 20 35 35 H 1.09002 * 110.62154 * 158.56453 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5646 -1.6453 -1.1348 6 6 1.8125 -0.1670 -2.4783 7 7 1.4316 1.0868 -2.5918 8 14 2.0556 -1.2113 -4.0080 9 1 0.7538 -1.7935 -4.4219 10 1 2.5908 -0.3653 -5.1050 11 1 3.0157 -2.3051 -3.7131 12 7 2.0184 -0.6905 1.1962 13 6 2.1471 -0.0181 2.3571 14 8 1.8582 1.1619 2.4116 15 6 2.6380 -0.7114 3.5581 16 6 2.8777 -0.0243 4.6713 17 6 3.0698 1.4691 4.6083 18 1 3.2156 1.7977 3.5793 19 6 1.8754 2.2076 5.2601 20 6 2.5286 3.3577 6.0510 21 8 3.9446 3.2892 5.8136 22 6 4.2541 1.9134 5.5040 23 1 -0.3633 0.4847 -0.9062 24 1 -0.3632 -1.0271 0.0333 25 1 -0.3633 0.5424 0.8729 26 1 1.2766 1.4690 -3.4697 27 1 2.2491 -1.6317 1.1526 28 1 2.8038 -1.7783 3.5358 29 1 2.9346 -0.5366 5.6203 30 1 1.3354 1.5408 5.9323 31 1 1.2073 2.6023 4.4947 32 1 2.1402 4.3147 5.7024 33 1 2.3250 3.2382 7.1151 34 1 4.2930 1.3145 6.4139 35 1 5.1950 1.8451 4.9579 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001145053709.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:57 Heat of formation + Delta-G solvation = -91.609786 kcal Electronic energy + Delta-G solvation = -17028.377661 eV Core-core repulsion = 14218.776721 eV Total energy + Delta-G solvation = -2809.600940 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.91790 -39.93962 -36.84633 -35.09434 -34.29373 -32.05534 -30.87230 -29.63591 -27.30465 -24.82518 -23.51708 -22.50495 -21.64076 -20.64245 -18.60875 -17.73630 -17.36900 -17.13876 -16.46908 -16.17393 -15.66376 -15.55999 -14.86210 -14.46878 -14.29388 -14.15057 -13.90848 -13.51386 -13.11391 -12.89285 -12.79840 -12.65540 -12.42641 -12.37525 -12.14266 -12.02176 -11.64220 -11.19488 -10.68153 -10.55598 -10.49896 -10.00033 -9.61444 -8.23620 -6.33960 0.45127 1.43311 1.44841 1.55488 2.36801 2.48297 2.77313 3.02846 3.08618 3.75362 3.82021 4.08871 4.12940 4.17561 4.38488 4.45276 4.62656 4.71278 4.78032 4.84222 4.85304 4.89323 5.00474 5.14346 5.27606 5.31314 5.39397 5.58281 5.62029 5.74206 5.91609 5.95358 6.02947 6.74727 7.05077 7.32222 7.63442 8.86558 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.043524 B = 0.004881 C = 0.004780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.167966 B = 5735.330282 C = 5856.320694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.267 3.733 3 H 0.001 0.999 4 C -0.551 4.551 5 H 0.074 0.926 6 C 0.017 3.983 7 N -0.919 5.919 8 Si 0.968 3.032 9 H -0.272 1.272 10 H -0.288 1.288 11 H -0.260 1.260 12 N -0.704 5.704 13 C 0.515 3.485 14 O -0.591 6.591 15 C -0.218 4.218 16 C -0.045 4.045 17 C -0.118 4.118 18 H 0.076 0.924 19 C -0.134 4.134 20 C 0.047 3.953 21 O -0.406 6.406 22 C 0.057 3.943 23 H 0.041 0.959 24 H 0.050 0.950 25 H 0.018 0.982 26 H 0.265 0.735 27 H 0.404 0.596 28 H 0.164 0.836 29 H 0.173 0.827 30 H 0.093 0.907 31 H 0.053 0.947 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.703 -5.168 16.426 17.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.163 3.837 3 H 0.019 0.981 4 C -0.589 4.589 5 H 0.092 0.908 6 C -0.183 4.183 7 N -0.557 5.557 8 Si 0.792 3.208 9 H -0.198 1.198 10 H -0.214 1.214 11 H -0.184 1.184 12 N -0.352 5.352 13 C 0.306 3.694 14 O -0.475 6.475 15 C -0.239 4.239 16 C -0.064 4.064 17 C -0.137 4.137 18 H 0.094 0.906 19 C -0.172 4.172 20 C -0.030 4.030 21 O -0.326 6.326 22 C -0.019 4.019 23 H 0.060 0.940 24 H 0.069 0.931 25 H 0.037 0.963 26 H 0.074 0.926 27 H 0.239 0.761 28 H 0.182 0.818 29 H 0.190 0.810 30 H 0.112 0.888 31 H 0.072 0.928 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.111 0.889 35 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.592 -4.036 16.302 16.993 hybrid contribution -0.235 -0.489 -1.428 1.528 sum 2.357 -4.525 14.873 15.724 Atomic orbital electron populations 1.21827 0.98464 0.99501 0.98588 1.18332 0.90777 0.92369 0.82221 0.98065 1.21513 1.38183 1.08150 0.91025 0.90829 1.25817 0.94564 0.95454 1.02471 1.70181 1.47016 1.13385 1.25071 0.85404 0.78682 0.78648 0.78053 1.19755 1.21396 1.18359 1.46241 1.65050 1.14258 1.09647 1.19530 0.78576 0.86601 0.84728 1.90678 1.53365 1.17625 1.85797 1.22887 1.06460 1.02197 0.92316 1.23750 0.90434 0.93840 0.98410 1.22209 0.95847 0.94162 1.01435 0.90580 1.22789 0.97877 0.97382 0.99172 1.23293 0.80408 0.99204 1.00048 1.88813 1.24320 1.28265 1.91161 1.23739 0.97566 0.82227 0.98372 0.93975 0.93129 0.96335 0.92572 0.76074 0.81847 0.80989 0.88813 0.92780 0.90379 0.89803 0.88949 0.88996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.24 9.36 71.98 0.67 -5.57 16 2 C 0.27 13.99 2.43 44.25 0.11 14.10 16 3 H 0.00 0.09 7.45 -2.39 -0.02 0.07 16 4 C -0.55 -29.49 8.63 25.60 0.22 -29.27 16 5 H 0.07 3.67 7.76 -2.91 -0.02 3.65 16 6 C 0.02 0.96 5.11 84.65 0.43 1.39 16 7 N -0.92 -54.32 12.50 21.45 0.27 -54.05 16 8 Si 0.97 42.26 29.56 68.60 2.03 44.29 16 9 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 10 H -0.29 -12.58 7.11 99.48 0.71 -11.88 16 11 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 12 N -0.70 -29.34 5.07 -449.70 -2.28 -31.62 16 13 C 0.52 20.37 7.49 86.57 0.65 21.02 16 14 O -0.59 -28.21 12.72 -4.08 -0.05 -28.26 16 15 C -0.22 -5.70 9.99 23.43 0.23 -5.46 16 16 C -0.04 -0.98 8.77 24.52 0.22 -0.76 16 17 C -0.12 -3.26 2.43 -10.24 -0.02 -3.29 16 18 H 0.08 2.92 5.56 -2.39 -0.01 2.91 16 19 C -0.13 -3.49 6.39 31.59 0.20 -3.29 16 20 C 0.05 1.09 7.70 72.36 0.56 1.65 16 21 O -0.41 -11.33 11.52 -148.98 -1.72 -13.04 16 22 C 0.06 1.30 7.16 72.66 0.52 1.82 16 23 H 0.04 2.27 7.17 -2.39 -0.02 2.26 16 24 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 25 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 27 H 0.40 14.01 8.51 -92.70 -0.79 13.22 16 28 H 0.16 2.98 8.06 -2.91 -0.02 2.96 16 29 H 0.17 2.08 8.06 -2.91 -0.02 2.05 16 30 H 0.09 1.91 7.85 -2.39 -0.02 1.89 16 31 H 0.05 1.75 7.83 -2.39 -0.02 1.74 16 32 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.09 1.46 8.04 -2.39 -0.02 1.45 16 35 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -70.75 293.45 2.33 -68.43 By element: Atomic # 1 Polarization: 21.64 SS G_CDS: 0.29 Total: 21.93 kcal Atomic # 6 Polarization: -11.44 SS G_CDS: 3.79 Total: -7.66 kcal Atomic # 7 Polarization: -83.67 SS G_CDS: -2.01 Total: -85.68 kcal Atomic # 8 Polarization: -39.54 SS G_CDS: -1.77 Total: -41.31 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Total: -70.75 2.33 -68.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001145053709.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.181 kcal (2) G-P(sol) polarization free energy of solvation -70.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds