Wall clock time and date at job start Sun Mar 29 2020 22:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.34779 * 119.99943 * 275.00054 * 12 2 1 14 14 O 1.21610 * 120.00383 * 0.02562 * 13 12 2 15 15 C 1.47107 * 119.99738 * 180.02562 * 13 12 2 16 16 C 1.32996 * 119.99640 * 180.02562 * 15 13 12 17 17 C 1.50699 * 119.99638 * 180.02562 * 16 15 13 18 18 H 1.09000 * 110.45966 * 357.38829 * 17 16 15 19 19 C 1.54506 * 110.51435 * 119.99975 * 17 16 15 20 20 C 1.54477 * 104.06489 * 118.64073 * 19 17 16 21 21 O 1.44426 * 104.80307 * 23.97879 * 20 19 17 22 22 C 1.44416 * 105.27432 * 319.48894 * 21 20 19 23 23 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 25 25 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 26 26 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 27 27 H 0.96997 * 120.00208 * 95.00345 * 12 2 1 28 28 H 1.07997 * 119.99985 * 359.97438 * 15 13 12 29 29 H 1.07997 * 120.00375 * 359.97438 * 16 15 13 30 30 H 1.08997 * 110.50928 * 237.28875 * 19 17 16 31 31 H 1.09005 * 110.51111 * 359.97438 * 19 17 16 32 32 H 1.09004 * 110.37115 * 142.80949 * 20 19 17 33 33 H 1.09002 * 110.37375 * 265.03656 * 20 19 17 34 34 H 1.08999 * 110.37580 * 281.67693 * 22 21 20 35 35 H 1.09000 * 110.37207 * 159.34264 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0181 2.3571 14 8 1.8573 1.1618 2.4119 15 6 2.6379 -0.7114 3.5581 16 6 2.7644 -0.0479 4.7039 17 6 3.2678 -0.7580 5.9340 18 1 3.4360 -1.8140 5.7224 19 6 4.5652 -0.0956 6.4488 20 6 4.1990 0.3951 7.8671 21 8 3.0997 -0.4473 8.2766 22 6 2.2712 -0.5893 7.1023 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 0.7088 1.1611 -3.4845 27 1 2.2490 -1.6316 1.1527 28 1 2.8947 -1.7592 3.5097 29 1 2.5071 0.9998 4.7524 30 1 5.3743 -0.8245 6.4938 31 1 4.8428 0.7454 5.8132 32 1 5.0454 0.2695 8.5423 33 1 3.8888 1.4397 7.8389 34 1 1.6633 0.3037 6.9565 35 1 1.6365 -1.4711 7.1901 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001145054021.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:00 Heat of formation + Delta-G solvation = -79.465774 kcal Electronic energy + Delta-G solvation = -16509.925407 eV Core-core repulsion = 13700.851071 eV Total energy + Delta-G solvation = -2809.074336 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.68956 -38.76559 -35.04063 -34.26732 -32.36939 -30.95748 -29.34880 -28.42785 -25.26566 -23.69975 -22.79259 -21.02253 -19.82253 -19.27460 -17.42542 -16.47021 -16.22485 -15.51822 -15.34676 -15.14407 -14.39522 -14.03998 -13.74998 -13.23772 -13.03053 -12.41338 -12.08634 -11.96121 -11.81677 -11.61161 -11.48359 -11.09996 -10.96833 -10.86420 -10.75195 -10.33924 -10.23735 -10.03951 -9.22566 -9.11238 -9.04656 -8.55371 -7.89609 -6.12688 -4.22214 1.63741 3.25193 3.30365 3.31606 3.73477 3.95375 4.09163 4.35931 4.45409 4.61620 4.75579 4.93143 5.04612 5.14690 5.19555 5.30272 5.46975 5.52262 5.60532 5.65454 5.73979 5.86647 6.49152 6.51234 6.57583 6.83385 6.96845 7.14955 7.45803 7.56817 7.69871 7.91569 8.14651 8.67265 8.77712 9.13157 9.45423 10.93325 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.057893 B = 0.003959 C = 0.003857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 483.534997 B = 7070.328330 C = 7256.851991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.263 3.737 3 H 0.049 0.951 4 C -0.535 4.535 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.903 3.097 9 H -0.286 1.286 10 H -0.276 1.276 11 H -0.276 1.276 12 N -0.702 5.702 13 C 0.527 3.473 14 O -0.560 6.560 15 C -0.190 4.190 16 C -0.086 4.086 17 C -0.097 4.097 18 H 0.091 0.909 19 C -0.148 4.148 20 C 0.044 3.956 21 O -0.378 6.378 22 C 0.052 3.948 23 H 0.026 0.974 24 H 0.014 0.986 25 H 0.090 0.910 26 H 0.265 0.735 27 H 0.389 0.611 28 H 0.121 0.879 29 H 0.128 0.872 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.069 -4.316 15.849 17.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.161 3.839 3 H 0.067 0.933 4 C -0.574 4.574 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.730 3.270 9 H -0.211 1.211 10 H -0.202 1.202 11 H -0.201 1.201 12 N -0.349 5.349 13 C 0.314 3.686 14 O -0.442 6.442 15 C -0.211 4.211 16 C -0.106 4.106 17 C -0.116 4.116 18 H 0.109 0.891 19 C -0.186 4.186 20 C -0.033 4.033 21 O -0.296 6.296 22 C -0.025 4.025 23 H 0.045 0.955 24 H 0.033 0.967 25 H 0.109 0.891 26 H 0.075 0.925 27 H 0.222 0.778 28 H 0.139 0.861 29 H 0.146 0.854 30 H 0.097 0.903 31 H 0.102 0.898 32 H 0.109 0.891 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 4.722 -3.447 15.888 16.929 hybrid contribution 0.461 -0.898 -1.233 1.593 sum 5.182 -4.344 14.655 16.140 Atomic orbital electron populations 1.22074 0.98410 0.99121 1.00915 1.18758 0.91086 0.94027 0.80041 0.93341 1.21189 1.32546 1.13266 0.90363 0.92113 1.24896 0.94793 0.94958 0.99067 1.69896 1.35778 1.22437 1.23999 0.86493 0.79163 0.79582 0.81767 1.21105 1.20168 1.20150 1.46471 1.64325 1.13516 1.10551 1.18521 0.79057 0.87002 0.84033 1.90734 1.52045 1.15978 1.85422 1.22942 1.03589 1.00431 0.94123 1.23443 0.94412 1.00277 0.92467 1.21749 0.95259 1.00542 0.94008 0.89095 1.22999 0.97392 1.01571 0.96590 1.23451 0.90065 0.94653 0.95147 1.89114 1.37371 1.70060 1.33088 1.23487 0.93268 1.02384 0.83315 0.95464 0.96650 0.89117 0.92501 0.77822 0.86119 0.85419 0.90277 0.89788 0.89090 0.92044 0.91559 0.88705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.71 9.26 37.16 0.34 -3.36 16 2 C 0.26 6.80 2.56 -69.09 -0.18 6.62 16 3 H 0.05 1.45 7.58 -51.92 -0.39 1.05 16 4 C -0.54 -14.31 8.73 -34.44 -0.30 -14.61 16 5 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -25.04 11.32 55.43 0.63 -24.42 16 8 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 16 9 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 11 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 12 N -0.70 -14.90 5.07 -56.12 -0.28 -15.18 16 13 C 0.53 10.74 7.73 -12.66 -0.10 10.64 16 14 O -0.56 -13.66 15.88 5.27 0.08 -13.58 16 15 C -0.19 -2.79 9.64 -37.80 -0.36 -3.15 16 16 C -0.09 -1.11 8.09 -36.13 -0.29 -1.40 16 17 C -0.10 -0.97 3.45 -90.20 -0.31 -1.28 16 18 H 0.09 0.83 7.87 -51.93 -0.41 0.42 16 19 C -0.15 -1.31 6.73 -25.17 -0.17 -1.48 16 20 C 0.04 0.38 7.63 37.93 0.29 0.67 16 21 O -0.38 -4.22 11.65 -35.23 -0.41 -4.63 16 22 C 0.05 0.52 7.17 37.94 0.27 0.79 16 23 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 26 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 27 H 0.39 7.08 8.52 -40.82 -0.35 6.73 16 28 H 0.12 1.42 7.90 -52.49 -0.41 1.00 16 29 H 0.13 1.83 7.49 -52.49 -0.39 1.44 16 30 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.08 0.76 7.73 -51.93 -0.40 0.36 16 32 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.66 7.86 -51.93 -0.41 0.25 16 35 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 296.98 15.07 4.48 4.48 Total: -1.00 -31.33 296.98 -6.59 -37.92 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -5.16 Total: 4.64 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: -0.90 Total: -4.86 kcal Atomic # 7 Polarization: -39.94 SS G_CDS: 0.34 Total: -39.60 kcal Atomic # 8 Polarization: -17.89 SS G_CDS: -0.33 Total: -18.21 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -31.33 -6.59 -37.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001145054021.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.546 kcal (2) G-P(sol) polarization free energy of solvation -31.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds