Wall clock time and date at job start Sun Mar 29 2020 22:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.34779 * 119.99943 * 275.00054 * 12 2 1 14 14 O 1.21610 * 120.00383 * 0.02562 * 13 12 2 15 15 C 1.47107 * 119.99738 * 180.02562 * 13 12 2 16 16 C 1.32996 * 119.99640 * 180.02562 * 15 13 12 17 17 C 1.50699 * 119.99638 * 180.02562 * 16 15 13 18 18 H 1.09000 * 110.45966 * 357.38829 * 17 16 15 19 19 C 1.54506 * 110.51435 * 119.99975 * 17 16 15 20 20 C 1.54477 * 104.06489 * 118.64073 * 19 17 16 21 21 O 1.44426 * 104.80307 * 23.97879 * 20 19 17 22 22 C 1.44416 * 105.27432 * 319.48894 * 21 20 19 23 23 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 25 25 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 26 26 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 27 27 H 0.96997 * 120.00208 * 95.00345 * 12 2 1 28 28 H 1.07997 * 119.99985 * 359.97438 * 15 13 12 29 29 H 1.07997 * 120.00375 * 359.97438 * 16 15 13 30 30 H 1.08997 * 110.50928 * 237.28875 * 19 17 16 31 31 H 1.09005 * 110.51111 * 359.97438 * 19 17 16 32 32 H 1.09004 * 110.37115 * 142.80949 * 20 19 17 33 33 H 1.09002 * 110.37375 * 265.03656 * 20 19 17 34 34 H 1.08999 * 110.37580 * 281.67693 * 22 21 20 35 35 H 1.09000 * 110.37207 * 159.34264 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0181 2.3571 14 8 1.8573 1.1618 2.4119 15 6 2.6379 -0.7114 3.5581 16 6 2.7644 -0.0479 4.7039 17 6 3.2678 -0.7580 5.9340 18 1 3.4360 -1.8140 5.7224 19 6 4.5652 -0.0956 6.4488 20 6 4.1990 0.3951 7.8671 21 8 3.0997 -0.4473 8.2766 22 6 2.2712 -0.5893 7.1023 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 0.7088 1.1611 -3.4845 27 1 2.2490 -1.6316 1.1527 28 1 2.8947 -1.7592 3.5097 29 1 2.5071 0.9998 4.7524 30 1 5.3743 -0.8245 6.4938 31 1 4.8428 0.7454 5.8132 32 1 5.0454 0.2695 8.5423 33 1 3.8888 1.4397 7.8389 34 1 1.6633 0.3037 6.9565 35 1 1.6365 -1.4711 7.1901 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001145054021.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:59 Heat of formation + Delta-G solvation = -101.333442 kcal Electronic energy + Delta-G solvation = -16510.873661 eV Core-core repulsion = 13700.851071 eV Total energy + Delta-G solvation = -2810.022589 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.72520 -40.19653 -36.83538 -35.44132 -34.32132 -32.02414 -30.81413 -29.61230 -27.36073 -24.96709 -23.66779 -22.47942 -21.24771 -20.64807 -19.01111 -17.73473 -17.41166 -17.04707 -16.56412 -16.27002 -15.94407 -15.68965 -14.92164 -14.76368 -14.39696 -13.84135 -13.72108 -13.03791 -13.00740 -12.90043 -12.83948 -12.74840 -12.57991 -12.28527 -12.24120 -12.15913 -11.62801 -11.14024 -10.84029 -10.77598 -10.59196 -10.36998 -9.72531 -8.18474 -6.36644 0.41834 1.44953 1.47320 1.55226 2.35129 2.43763 2.64802 3.04103 3.11910 3.70222 3.71193 3.92252 4.09225 4.19003 4.29667 4.35417 4.47973 4.72827 4.76079 4.85913 4.87930 4.89974 5.04305 5.07128 5.08638 5.34522 5.43695 5.47332 5.59708 5.68713 5.81649 5.91472 6.08102 6.71001 6.97103 7.31094 7.54753 8.87881 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.057893 B = 0.003959 C = 0.003857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 483.534997 B = 7070.328330 C = 7256.851991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.268 3.732 3 H -0.003 1.003 4 C -0.550 4.550 5 H 0.075 0.925 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.975 3.025 9 H -0.286 1.286 10 H -0.270 1.270 11 H -0.263 1.263 12 N -0.699 5.699 13 C 0.521 3.479 14 O -0.611 6.611 15 C -0.203 4.203 16 C -0.056 4.056 17 C -0.092 4.092 18 H 0.111 0.889 19 C -0.146 4.146 20 C 0.039 3.961 21 O -0.395 6.395 22 C 0.050 3.950 23 H 0.041 0.959 24 H 0.010 0.990 25 H 0.067 0.933 26 H 0.266 0.734 27 H 0.407 0.593 28 H 0.160 0.840 29 H 0.108 0.892 30 H 0.096 0.904 31 H 0.079 0.921 32 H 0.109 0.891 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.310 -6.564 16.642 18.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.164 3.836 3 H 0.015 0.985 4 C -0.588 4.588 5 H 0.093 0.907 6 C -0.187 4.187 7 N -0.557 5.557 8 Si 0.799 3.201 9 H -0.212 1.212 10 H -0.195 1.195 11 H -0.188 1.188 12 N -0.347 5.347 13 C 0.311 3.689 14 O -0.496 6.496 15 C -0.223 4.223 16 C -0.077 4.077 17 C -0.111 4.111 18 H 0.129 0.871 19 C -0.184 4.184 20 C -0.037 4.037 21 O -0.314 6.314 22 C -0.027 4.027 23 H 0.060 0.940 24 H 0.030 0.970 25 H 0.086 0.914 26 H 0.075 0.925 27 H 0.242 0.758 28 H 0.177 0.823 29 H 0.126 0.874 30 H 0.114 0.886 31 H 0.098 0.902 32 H 0.127 0.873 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 5.978 -5.735 16.708 18.649 hybrid contribution 0.080 -0.103 -1.370 1.377 sum 6.058 -5.838 15.337 17.493 Atomic orbital electron populations 1.21896 0.98261 0.99513 0.99535 1.18366 0.91209 0.91930 0.82104 0.98528 1.21529 1.32778 1.13687 0.90781 0.90726 1.25843 0.94811 0.95580 1.02436 1.70054 1.36917 1.23966 1.24731 0.85353 0.78652 0.78701 0.77365 1.21163 1.19508 1.18757 1.46214 1.64520 1.14247 1.09694 1.19429 0.77798 0.86544 0.85135 1.90706 1.54200 1.18419 1.86275 1.22757 1.05817 1.01983 0.91749 1.23600 0.91463 0.99398 0.93206 1.21788 0.95712 1.01330 0.92251 0.87060 1.23019 0.97174 1.01809 0.96352 1.23612 0.90118 0.94466 0.95536 1.89104 1.38100 1.70497 1.33676 1.23545 0.93277 1.02845 0.83004 0.93969 0.97047 0.91421 0.92497 0.75785 0.82267 0.87401 0.88578 0.90217 0.87257 0.91969 0.92161 0.87325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.90 9.26 71.98 0.67 -6.24 16 2 C 0.27 14.19 2.56 44.24 0.11 14.30 16 3 H 0.00 -0.20 7.58 -2.38 -0.02 -0.22 16 4 C -0.55 -29.36 8.73 25.60 0.22 -29.14 16 5 H 0.07 3.69 7.74 -2.91 -0.02 3.66 16 6 C 0.01 0.72 5.30 84.66 0.45 1.17 16 7 N -0.92 -53.16 11.32 21.45 0.24 -52.91 16 8 Si 0.98 41.93 29.54 68.60 2.03 43.96 16 9 H -0.29 -12.23 7.11 99.48 0.71 -11.52 16 10 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 11 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 12 N -0.70 -29.62 5.07 -449.71 -2.28 -31.90 16 13 C 0.52 21.34 7.73 86.57 0.67 22.01 16 14 O -0.61 -30.93 15.88 -4.06 -0.06 -31.00 16 15 C -0.20 -5.58 9.64 23.43 0.23 -5.35 16 16 C -0.06 -1.37 8.09 24.52 0.20 -1.17 16 17 C -0.09 -1.58 3.45 -10.52 -0.04 -1.61 16 18 H 0.11 1.55 7.87 -2.39 -0.02 1.53 16 19 C -0.15 -2.19 6.73 31.61 0.21 -1.98 16 20 C 0.04 0.60 7.63 72.48 0.55 1.15 16 21 O -0.39 -7.95 11.65 -148.98 -1.74 -9.69 16 22 C 0.05 0.88 7.17 72.49 0.52 1.40 16 23 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 24 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 25 H 0.07 3.82 6.07 -2.39 -0.01 3.80 16 26 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 27 H 0.41 14.21 8.52 -92.71 -0.79 13.42 16 28 H 0.16 3.14 7.90 -2.91 -0.02 3.12 16 29 H 0.11 3.08 7.49 -2.91 -0.02 3.06 16 30 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.08 1.28 7.73 -2.38 -0.02 1.26 16 32 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.06 1.13 7.86 -2.39 -0.02 1.11 16 35 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -69.45 296.98 2.27 -67.18 By element: Atomic # 1 Polarization: 19.52 SS G_CDS: 0.29 Total: 19.81 kcal Atomic # 6 Polarization: -9.25 SS G_CDS: 3.79 Total: -5.45 kcal Atomic # 7 Polarization: -82.78 SS G_CDS: -2.04 Total: -84.81 kcal Atomic # 8 Polarization: -38.88 SS G_CDS: -1.80 Total: -40.68 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.96 kcal Total: -69.45 2.27 -67.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001145054021.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.153 kcal (2) G-P(sol) polarization free energy of solvation -69.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds