Wall clock time and date at job start Sun Mar 29 2020 22:40:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.37100 * 119.99576 * 2 1 4 4 H 1.07998 * 119.99803 * 182.22890 * 3 2 1 5 5 C 1.38954 * 120.00069 * 2.22578 * 3 2 1 6 6 N 1.31414 * 119.99858 * 5.33851 * 5 3 2 7 7 Si 1.86804 * 119.99892 * 185.34195 * 5 3 2 8 8 H 1.48497 * 109.46920 * 0.02562 * 7 5 3 9 9 H 1.48501 * 109.47142 * 119.99948 * 7 5 3 10 10 H 1.48497 * 109.47043 * 240.00020 * 7 5 3 11 11 C 1.34770 * 120.00017 * 180.27236 * 2 1 3 12 12 O 1.21300 * 119.99835 * 175.66231 * 11 2 1 13 13 C 1.50695 * 120.00451 * 355.66114 * 11 2 1 14 14 C 1.54389 * 111.79652 * 296.43079 * 13 11 2 15 15 N 1.50901 * 103.66341 * 261.46935 * 14 13 11 16 16 C 1.48558 * 104.30120 * 320.41767 * 15 14 13 17 17 C 1.54234 * 104.54740 * 40.26227 * 16 15 14 18 18 H 1.09000 * 112.71000 * 97.81582 * 17 16 15 19 19 C 1.54421 * 109.75970 * 222.81411 * 17 16 15 20 20 C 1.54903 * 102.98780 * 134.78945 * 19 17 16 21 21 N 1.47884 * 111.76174 * 58.48889 * 13 11 2 22 22 H 1.09004 * 109.47047 * 182.26563 * 1 2 3 23 23 H 1.08997 * 109.47738 * 302.26849 * 1 2 3 24 24 H 1.08997 * 109.47082 * 62.27283 * 1 2 3 25 25 H 0.97001 * 119.99513 * 179.97438 * 6 5 3 26 26 H 1.09005 * 110.37187 * 20.49279 * 14 13 11 27 27 H 1.09001 * 110.37369 * 142.82518 * 14 13 11 28 28 H 1.00907 * 110.72917 * 200.95553 * 15 14 13 29 29 H 1.08996 * 110.42282 * 281.49590 * 16 15 14 30 30 H 1.08995 * 110.51834 * 159.07600 * 16 15 14 31 31 H 1.09001 * 110.70817 * 16.41669 * 19 17 16 32 32 H 1.09002 * 110.85989 * 253.23521 * 19 17 16 33 33 H 1.08996 * 110.67117 * 203.78091 * 20 19 17 34 34 H 1.09004 * 110.67209 * 80.63909 * 20 19 17 35 35 H 1.00896 * 111.00218 * 336.94880 * 21 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1504 1.1874 0.0000 4 1 3.2298 1.1878 -0.0364 5 6 1.4564 2.3903 0.0467 6 7 0.1508 2.3901 0.1966 7 14 2.3792 4.0075 -0.1036 8 1 3.8304 3.7362 -0.2635 9 1 1.8820 4.7528 -1.2879 10 1 2.1586 4.8189 1.1204 11 6 2.1389 -1.1671 -0.0055 12 8 3.3493 -1.1682 -0.0850 13 6 1.3887 -2.4708 0.0870 14 6 0.6357 -2.6050 1.4281 15 7 1.5529 -3.4595 2.2680 16 6 2.0781 -4.4756 1.3200 17 6 2.3420 -3.6912 0.0185 18 1 3.3859 -3.3972 -0.0913 19 6 1.8534 -4.5127 -1.1943 20 6 1.0918 -3.4631 -2.0417 21 7 0.4183 -2.6247 -1.0182 22 1 -0.3633 -1.0269 0.0406 23 1 -0.3634 0.5486 0.8689 24 1 -0.3633 0.4781 -0.9096 25 1 -0.3336 3.2299 0.2296 26 1 0.4895 -1.6243 1.8809 27 1 -0.3233 -3.1007 1.2768 28 1 1.0433 -3.8970 3.0211 29 1 1.3367 -5.2562 1.1498 30 1 3.0045 -4.9079 1.6980 31 1 1.1826 -5.3102 -0.8747 32 1 2.6965 -4.9203 -1.7522 33 1 0.3580 -3.9477 -2.6857 34 1 1.7878 -2.8660 -2.6309 35 1 0.1592 -1.7272 -1.3995 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160583737.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:57 Heat of formation + Delta-G solvation = 8.504265 kcal Electronic energy + Delta-G solvation = -18454.135029 eV Core-core repulsion = 15681.168111 eV Total energy + Delta-G solvation = -2772.966918 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.26612 -37.31014 -34.79772 -34.63388 -32.00690 -30.50058 -28.32005 -26.30508 -26.25259 -24.50714 -21.64670 -21.35728 -20.38264 -18.41459 -17.02134 -16.25527 -15.96759 -15.53215 -14.58513 -14.35567 -14.05784 -13.79895 -13.58778 -13.12313 -12.37568 -12.22281 -12.02175 -11.82902 -11.53346 -11.44794 -11.15915 -10.98120 -10.71898 -10.64888 -10.54469 -10.34585 -10.28315 -10.07829 -9.07972 -9.00736 -8.27513 -7.93362 -7.84306 -6.22074 -3.81571 3.13342 3.24380 3.31985 3.79193 4.09946 4.36469 4.60665 4.76211 4.84501 5.07793 5.15790 5.27010 5.45834 5.58523 5.70708 5.71989 5.84110 5.96743 6.03017 6.12222 6.18275 6.20422 6.39172 6.45261 6.60424 6.79167 7.02523 7.16297 7.41741 7.55964 7.56848 7.60354 8.06379 8.48448 9.18110 9.43686 9.96048 10.69135 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.036756 B = 0.007857 C = 0.007754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.604702 B = 3563.000468 C = 3610.012901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.444 5.444 3 C -0.298 4.298 4 H 0.104 0.896 5 C 0.026 3.974 6 N -0.887 5.887 7 Si 0.931 3.069 8 H -0.269 1.269 9 H -0.281 1.281 10 H -0.281 1.281 11 C 0.434 3.566 12 O -0.588 6.588 13 C 0.091 3.909 14 C 0.055 3.945 15 N -0.662 5.662 16 C 0.048 3.952 17 C -0.085 4.085 18 H 0.107 0.893 19 C -0.117 4.117 20 C 0.035 3.965 21 N -0.662 5.662 22 H 0.043 0.957 23 H 0.088 0.912 24 H 0.055 0.945 25 H 0.265 0.735 26 H 0.087 0.913 27 H 0.058 0.942 28 H 0.330 0.670 29 H 0.039 0.961 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.043 0.957 35 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.903 -10.504 -0.858 10.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.162 5.162 3 C -0.426 4.426 4 H 0.122 0.878 5 C -0.176 4.176 6 N -0.529 5.529 7 Si 0.757 3.243 8 H -0.193 1.193 9 H -0.207 1.207 10 H -0.207 1.207 11 C 0.220 3.780 12 O -0.472 6.472 13 C -0.004 4.004 14 C -0.074 4.074 15 N -0.290 5.290 16 C -0.082 4.082 17 C -0.105 4.105 18 H 0.125 0.875 19 C -0.155 4.155 20 C -0.094 4.094 21 N -0.296 5.296 22 H 0.061 0.939 23 H 0.106 0.894 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.105 0.895 27 H 0.077 0.923 28 H 0.144 0.856 29 H 0.057 0.943 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.062 0.938 35 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -2.284 -10.371 -0.561 10.635 hybrid contribution -0.036 1.014 -0.617 1.188 sum -2.320 -9.357 -1.178 9.712 Atomic orbital electron populations 1.22158 0.80326 0.97684 1.04750 1.43711 1.06063 1.04756 1.61721 1.19868 0.93203 0.81969 1.47551 0.87841 1.25312 0.95826 0.99689 0.96746 1.70159 1.06295 1.26841 1.49557 0.85781 0.79657 0.81024 0.77799 1.19290 1.20693 1.20669 1.20020 0.88071 0.84607 0.85315 1.90478 1.14121 1.86552 1.56092 1.22337 0.91006 0.94363 0.92652 1.23458 0.93762 0.98753 0.91476 1.64399 1.34960 1.19956 1.09703 1.22913 0.99425 0.93287 0.92539 1.22620 1.01188 0.92884 0.93835 0.87482 1.22594 0.99296 0.97418 0.96193 1.23038 0.96760 0.95100 0.94504 1.63565 1.36609 1.20506 1.08950 0.93850 0.89417 0.92637 0.92457 0.89462 0.92334 0.85600 0.94256 0.90546 0.91092 0.91230 0.90269 0.93838 0.83290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.14 6.42 59.85 0.38 2.53 16 2 N -0.44 -11.52 2.99 -122.19 -0.37 -11.89 16 3 C -0.30 -8.43 9.57 -14.93 -0.14 -8.57 16 4 H 0.10 3.10 7.17 -52.49 -0.38 2.73 16 5 C 0.03 0.68 5.44 -17.47 -0.09 0.59 16 6 N -0.89 -23.24 9.48 55.50 0.53 -22.71 16 7 Si 0.93 21.03 29.56 -169.99 -5.02 16.00 16 8 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 9 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 10 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 11 C 0.43 10.88 6.59 -10.99 -0.07 10.81 16 12 O -0.59 -16.82 15.08 5.54 0.08 -16.74 16 13 C 0.09 1.79 0.62 -130.42 -0.08 1.71 16 14 C 0.05 0.99 5.64 -0.84 0.00 0.98 16 15 N -0.66 -10.96 7.69 -107.88 -0.83 -11.79 16 16 C 0.05 0.72 7.04 -2.26 -0.02 0.70 16 17 C -0.09 -1.50 3.50 -88.17 -0.31 -1.81 16 18 H 0.11 2.18 6.81 -51.93 -0.35 1.83 16 19 C -0.12 -1.65 6.62 -24.98 -0.17 -1.82 16 20 C 0.04 0.54 7.55 -1.95 -0.01 0.52 16 21 N -0.66 -11.52 6.07 -96.43 -0.59 -12.11 16 22 H 0.04 0.85 3.69 -51.93 -0.19 0.66 16 23 H 0.09 2.14 6.56 -51.93 -0.34 1.80 16 24 H 0.06 1.30 7.50 -51.93 -0.39 0.91 16 25 H 0.26 6.58 8.31 -40.82 -0.34 6.24 16 26 H 0.09 1.75 6.75 -51.93 -0.35 1.40 16 27 H 0.06 0.95 7.97 -51.93 -0.41 0.53 16 28 H 0.33 4.43 8.93 -39.29 -0.35 4.08 16 29 H 0.04 0.51 7.26 -51.93 -0.38 0.14 16 30 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 31 H 0.07 0.90 7.26 -51.93 -0.38 0.52 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.35 6.44 5.96 -39.29 -0.23 6.21 16 LS Contribution 267.88 15.07 4.04 4.04 Total: -1.00 -30.69 267.88 -7.25 -37.94 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -4.58 Total: 11.62 kcal Atomic # 6 Polarization: 6.16 SS G_CDS: -0.52 Total: 5.64 kcal Atomic # 7 Polarization: -57.25 SS G_CDS: -1.25 Total: -58.50 kcal Atomic # 8 Polarization: -16.82 SS G_CDS: 0.08 Total: -16.74 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -30.69 -7.25 -37.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160583737.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.445 kcal (2) G-P(sol) polarization free energy of solvation -30.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds