Wall clock time and date at job start Sun Mar 29 2020 22:40:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.37100 * 119.99576 * 2 1 4 4 H 1.07998 * 119.99803 * 182.22890 * 3 2 1 5 5 C 1.38954 * 120.00069 * 2.22578 * 3 2 1 6 6 N 1.31414 * 119.99858 * 5.33851 * 5 3 2 7 7 Si 1.86804 * 119.99892 * 185.34195 * 5 3 2 8 8 H 1.48497 * 109.46920 * 0.02562 * 7 5 3 9 9 H 1.48501 * 109.47142 * 119.99948 * 7 5 3 10 10 H 1.48497 * 109.47043 * 240.00020 * 7 5 3 11 11 C 1.34770 * 120.00017 * 180.27236 * 2 1 3 12 12 O 1.21300 * 119.99835 * 175.66231 * 11 2 1 13 13 C 1.50695 * 120.00451 * 355.66114 * 11 2 1 14 14 C 1.54389 * 111.79652 * 296.43079 * 13 11 2 15 15 N 1.50901 * 103.66341 * 261.46935 * 14 13 11 16 16 C 1.48558 * 104.30120 * 320.41767 * 15 14 13 17 17 C 1.54234 * 104.54740 * 40.26227 * 16 15 14 18 18 H 1.09000 * 112.71000 * 97.81582 * 17 16 15 19 19 C 1.54421 * 109.75970 * 222.81411 * 17 16 15 20 20 C 1.54903 * 102.98780 * 134.78945 * 19 17 16 21 21 N 1.47884 * 111.76174 * 58.48889 * 13 11 2 22 22 H 1.09004 * 109.47047 * 182.26563 * 1 2 3 23 23 H 1.08997 * 109.47738 * 302.26849 * 1 2 3 24 24 H 1.08997 * 109.47082 * 62.27283 * 1 2 3 25 25 H 0.97001 * 119.99513 * 179.97438 * 6 5 3 26 26 H 1.09005 * 110.37187 * 20.49279 * 14 13 11 27 27 H 1.09001 * 110.37369 * 142.82518 * 14 13 11 28 28 H 1.00907 * 110.72917 * 200.95553 * 15 14 13 29 29 H 1.08996 * 110.42282 * 281.49590 * 16 15 14 30 30 H 1.08995 * 110.51834 * 159.07600 * 16 15 14 31 31 H 1.09001 * 110.70817 * 16.41669 * 19 17 16 32 32 H 1.09002 * 110.85989 * 253.23521 * 19 17 16 33 33 H 1.08996 * 110.67117 * 203.78091 * 20 19 17 34 34 H 1.09004 * 110.67209 * 80.63909 * 20 19 17 35 35 H 1.00896 * 111.00218 * 336.94880 * 21 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1504 1.1874 0.0000 4 1 3.2298 1.1878 -0.0364 5 6 1.4564 2.3903 0.0467 6 7 0.1508 2.3901 0.1966 7 14 2.3792 4.0075 -0.1036 8 1 3.8304 3.7362 -0.2635 9 1 1.8820 4.7528 -1.2879 10 1 2.1586 4.8189 1.1204 11 6 2.1389 -1.1671 -0.0055 12 8 3.3493 -1.1682 -0.0850 13 6 1.3887 -2.4708 0.0870 14 6 0.6357 -2.6050 1.4281 15 7 1.5529 -3.4595 2.2680 16 6 2.0781 -4.4756 1.3200 17 6 2.3420 -3.6912 0.0185 18 1 3.3859 -3.3972 -0.0913 19 6 1.8534 -4.5127 -1.1943 20 6 1.0918 -3.4631 -2.0417 21 7 0.4183 -2.6247 -1.0182 22 1 -0.3633 -1.0269 0.0406 23 1 -0.3634 0.5486 0.8689 24 1 -0.3633 0.4781 -0.9096 25 1 -0.3336 3.2299 0.2296 26 1 0.4895 -1.6243 1.8809 27 1 -0.3233 -3.1007 1.2768 28 1 1.0433 -3.8970 3.0211 29 1 1.3367 -5.2562 1.1498 30 1 3.0045 -4.9079 1.6980 31 1 1.1826 -5.3102 -0.8747 32 1 2.6965 -4.9203 -1.7522 33 1 0.3580 -3.9477 -2.6857 34 1 1.7878 -2.8660 -2.6309 35 1 0.1592 -1.7272 -1.3995 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160583737.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:57 Heat of formation + Delta-G solvation = -16.625667 kcal Electronic energy + Delta-G solvation = -18455.224745 eV Core-core repulsion = 15681.168111 eV Total energy + Delta-G solvation = -2774.056634 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.83814 -39.08001 -36.82698 -35.95519 -33.90011 -32.05126 -29.76412 -28.19627 -27.56885 -26.47402 -23.18117 -22.64638 -21.92867 -19.94034 -19.07620 -17.96065 -17.34483 -17.27058 -16.27965 -16.11355 -15.75134 -15.24056 -15.05610 -14.76261 -14.02725 -13.87378 -13.66586 -13.39022 -13.04178 -12.86885 -12.83896 -12.57754 -12.53446 -12.21415 -12.15132 -11.99935 -11.79019 -11.60936 -11.09948 -10.76869 -9.94048 -9.58021 -9.50433 -8.26075 -5.95976 1.30987 1.37082 1.51097 1.90093 2.21779 2.91483 3.01033 3.10328 3.33759 3.44731 3.83829 3.89005 4.02237 4.20343 4.41579 4.46709 4.54083 4.65477 4.67923 4.80227 4.91738 4.93178 4.99917 5.08489 5.11409 5.24625 5.39183 5.48680 5.52284 5.78997 6.00468 6.08264 6.43367 6.48377 7.11170 7.42591 7.95584 8.62198 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.036756 B = 0.007857 C = 0.007754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.604702 B = 3563.000468 C = 3610.012901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.457 5.457 3 C -0.344 4.344 4 H 0.071 0.929 5 C -0.003 4.003 6 N -0.892 5.892 7 Si 0.993 3.007 8 H -0.279 1.279 9 H -0.266 1.266 10 H -0.268 1.268 11 C 0.421 3.579 12 O -0.636 6.636 13 C 0.091 3.909 14 C 0.062 3.938 15 N -0.682 5.682 16 C 0.055 3.945 17 C -0.094 4.094 18 H 0.068 0.932 19 C -0.104 4.104 20 C 0.030 3.970 21 N -0.651 5.651 22 H 0.076 0.924 23 H 0.069 0.931 24 H 0.044 0.956 25 H 0.273 0.727 26 H 0.059 0.941 27 H 0.085 0.915 28 H 0.349 0.651 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.100 0.900 32 H 0.085 0.915 33 H 0.114 0.886 34 H 0.021 0.979 35 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.404 -11.941 -0.987 12.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.174 5.174 3 C -0.472 4.472 4 H 0.089 0.911 5 C -0.204 4.204 6 N -0.532 5.532 7 Si 0.816 3.184 8 H -0.204 1.204 9 H -0.191 1.191 10 H -0.193 1.193 11 C 0.209 3.791 12 O -0.523 6.523 13 C -0.004 4.004 14 C -0.068 4.068 15 N -0.312 5.312 16 C -0.074 4.074 17 C -0.114 4.114 18 H 0.087 0.913 19 C -0.142 4.142 20 C -0.099 4.099 21 N -0.283 5.283 22 H 0.094 0.906 23 H 0.088 0.912 24 H 0.063 0.937 25 H 0.083 0.917 26 H 0.077 0.923 27 H 0.103 0.897 28 H 0.166 0.834 29 H 0.092 0.908 30 H 0.104 0.896 31 H 0.119 0.881 32 H 0.103 0.897 33 H 0.132 0.868 34 H 0.039 0.961 35 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -3.836 -11.828 -0.680 12.454 hybrid contribution 0.448 1.471 -0.578 1.643 sum -3.388 -10.357 -1.258 10.970 Atomic orbital electron populations 1.21989 0.78598 0.99290 1.03138 1.43938 1.07179 1.04642 1.61671 1.19754 0.92337 0.84018 1.51043 0.91070 1.26050 0.96821 1.02085 0.95418 1.70247 1.06839 1.28083 1.48020 0.84883 0.77798 0.77072 0.78601 1.20416 1.19088 1.19336 1.21151 0.87989 0.86275 0.83666 1.90430 1.16476 1.87633 1.57809 1.22324 0.91744 0.91852 0.94514 1.23301 0.94903 0.98208 0.90352 1.64308 1.35237 1.21066 1.10604 1.22945 1.00793 0.93070 0.90595 1.22641 0.98619 0.92957 0.97206 0.91328 1.22609 1.00174 0.97112 0.94339 1.23238 0.97346 0.94931 0.94398 1.63668 1.35537 1.19974 1.09123 0.90645 0.91249 0.93745 0.91673 0.92269 0.89668 0.83426 0.90850 0.89630 0.88128 0.89664 0.86805 0.96067 0.84310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 5.20 6.42 127.77 0.82 6.02 16 2 N -0.46 -24.61 2.99 -658.89 -1.97 -26.58 16 3 C -0.34 -20.32 9.57 84.04 0.80 -19.52 16 4 H 0.07 4.57 7.17 -2.91 -0.02 4.55 16 5 C 0.00 -0.14 5.44 84.93 0.46 0.32 16 6 N -0.89 -46.83 9.48 21.66 0.21 -46.63 16 7 Si 0.99 43.49 29.56 68.60 2.03 45.51 16 8 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 9 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 10 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 11 C 0.42 21.95 6.59 87.66 0.58 22.53 16 12 O -0.64 -38.50 15.08 -3.09 -0.05 -38.55 16 13 C 0.09 3.51 0.62 3.75 0.00 3.51 16 14 C 0.06 2.15 5.64 85.99 0.49 2.63 16 15 N -0.68 -21.32 7.69 -495.22 -3.81 -25.13 16 16 C 0.06 1.50 7.04 86.40 0.61 2.10 16 17 C -0.09 -3.19 3.50 -9.20 -0.03 -3.23 16 18 H 0.07 2.87 6.81 -2.39 -0.02 2.85 16 19 C -0.10 -2.63 6.62 31.73 0.21 -2.42 16 20 C 0.03 0.83 7.55 86.65 0.65 1.49 16 21 N -0.65 -21.54 6.07 -459.01 -2.79 -24.33 16 22 H 0.08 2.94 3.69 -2.38 -0.01 2.93 16 23 H 0.07 3.45 6.56 -2.39 -0.02 3.43 16 24 H 0.04 2.11 7.50 -2.39 -0.02 2.09 16 25 H 0.27 13.33 8.31 -92.71 -0.77 12.56 16 26 H 0.06 2.38 6.75 -2.38 -0.02 2.36 16 27 H 0.09 2.48 7.97 -2.39 -0.02 2.47 16 28 H 0.35 8.44 8.93 -89.69 -0.80 7.64 16 29 H 0.07 1.53 7.26 -2.39 -0.02 1.52 16 30 H 0.09 2.17 8.14 -2.39 -0.02 2.16 16 31 H 0.10 1.99 7.26 -2.39 -0.02 1.97 16 32 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 34 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.34 12.30 5.96 -89.70 -0.53 11.77 16 Total: -1.00 -69.68 267.88 -2.00 -71.68 By element: Atomic # 1 Polarization: 30.79 SS G_CDS: -0.21 Total: 30.58 kcal Atomic # 6 Polarization: 8.85 SS G_CDS: 4.59 Total: 13.44 kcal Atomic # 7 Polarization: -114.30 SS G_CDS: -8.36 Total: -122.66 kcal Atomic # 8 Polarization: -38.50 SS G_CDS: -0.05 Total: -38.55 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.51 kcal Total: -69.68 -2.00 -71.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160583737.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.051 kcal (2) G-P(sol) polarization free energy of solvation -69.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds