Wall clock time and date at job start Sun Mar 29 2020 22:41:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.37092 * 120.00244 * 2 1 4 4 H 1.08002 * 119.99985 * 144.01419 * 3 2 1 5 5 C 1.38951 * 120.00225 * 324.02266 * 3 2 1 6 6 N 1.31405 * 120.00533 * 159.37739 * 5 3 2 7 7 Si 1.86804 * 119.99524 * 339.37728 * 5 3 2 8 8 H 1.48497 * 109.47170 * 95.34084 * 7 5 3 9 9 H 1.48504 * 109.47150 * 215.34273 * 7 5 3 10 10 H 1.48499 * 109.47010 * 335.33815 * 7 5 3 11 11 C 1.34780 * 120.00209 * 180.02562 * 2 1 3 12 12 O 1.21288 * 120.00135 * 184.74151 * 11 2 1 13 13 C 1.50707 * 119.99594 * 4.74110 * 11 2 1 14 14 H 1.08994 * 110.36292 * 27.24620 * 13 11 2 15 15 C 1.54656 * 110.40345 * 149.70576 * 13 11 2 16 16 N 1.48651 * 104.65121 * 95.08438 * 15 13 11 17 17 C 1.48813 * 104.40109 * 38.87602 * 16 15 13 18 18 C 1.53272 * 110.40329 * 264.90669 * 13 11 2 19 19 C 1.52851 * 115.77717 * 111.60795 * 18 13 11 20 20 N 1.48171 * 85.83770 * 219.38438 * 19 18 13 21 21 C 1.48163 * 90.95743 * 23.89996 * 20 19 18 22 22 H 1.09004 * 109.47307 * 265.17347 * 1 2 3 23 23 H 1.09006 * 109.47177 * 145.17958 * 1 2 3 24 24 H 1.09001 * 109.47370 * 25.17663 * 1 2 3 25 25 H 0.97001 * 120.00255 * 179.97438 * 6 5 3 26 26 H 1.09003 * 110.39781 * 213.88139 * 15 13 11 27 27 H 1.09006 * 110.39589 * 336.28736 * 15 13 11 28 28 H 1.00901 * 110.99286 * 158.53534 * 16 15 13 29 29 H 1.09004 * 110.45828 * 202.77026 * 17 16 15 30 30 H 1.08993 * 110.46122 * 80.18835 * 17 16 15 31 31 H 1.08996 * 113.81619 * 333.61485 * 19 18 13 32 32 H 1.09005 * 113.81246 * 105.15424 * 19 18 13 33 33 H 1.00889 * 111.00101 * 136.87878 * 20 19 18 34 34 H 1.09007 * 113.82043 * 221.87514 * 21 20 19 35 35 H 1.09006 * 113.81755 * 90.33500 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1504 1.1872 0.0000 4 1 3.0759 1.2764 0.5496 5 6 1.6546 2.2759 -0.7069 6 7 2.0505 3.4917 -0.4040 7 14 0.4249 2.0109 -2.0879 8 1 -0.9535 2.1837 -1.5633 9 1 0.6715 3.0009 -3.1670 10 1 0.5792 0.6376 -2.6315 11 6 2.1389 -1.1672 -0.0005 12 8 3.3486 -1.1690 0.0863 13 6 1.3892 -2.4701 -0.1090 14 1 0.4486 -2.3233 -0.6398 15 6 2.2553 -3.5326 -0.8250 16 7 2.9079 -4.2895 0.2754 17 6 1.8536 -4.4082 1.3189 18 6 1.1312 -3.0557 1.2838 19 6 -0.3281 -3.0714 1.7384 20 7 0.1963 -2.6980 3.0729 21 6 1.4160 -2.1218 2.4600 22 1 -0.3634 -0.0865 1.0240 23 1 -0.3634 -0.8437 -0.5868 24 1 -0.3634 0.9300 -0.4372 25 1 1.7046 4.2516 -0.8978 26 1 1.6280 -4.1947 -1.4219 27 1 3.0057 -3.0511 -1.4523 28 1 3.2082 -5.1995 -0.0404 29 1 2.3034 -4.5747 2.2977 30 1 1.1635 -5.2154 1.0732 31 1 -0.9418 -2.2991 1.2748 32 1 -0.7883 -4.0590 1.7068 33 1 -0.3705 -1.9784 3.4957 34 1 2.3336 -2.3594 2.9984 35 1 1.3270 -1.0637 2.2135 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160583918.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:41:04 Heat of formation + Delta-G solvation = 33.621205 kcal Electronic energy + Delta-G solvation = -18445.252563 eV Core-core repulsion = 15673.374798 eV Total energy + Delta-G solvation = -2771.877766 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.81267 -38.03491 -36.09070 -34.64470 -32.08941 -29.97353 -28.17701 -26.56120 -26.05882 -24.95295 -23.12788 -21.82553 -19.28142 -17.96543 -17.09666 -16.69344 -16.60130 -15.62193 -15.26966 -14.66085 -14.27103 -13.99151 -13.62156 -13.31636 -12.78431 -12.71473 -12.36216 -12.26490 -12.09628 -11.72305 -11.53944 -11.26551 -11.08378 -10.76593 -10.49424 -10.36543 -10.29770 -9.91956 -9.07386 -8.80065 -8.40698 -8.31688 -7.74668 -6.39313 -3.96136 2.98746 3.18842 3.21649 3.67703 4.08324 4.12020 4.22330 4.48456 4.63074 4.82941 4.94159 5.19634 5.26476 5.34780 5.48988 5.51522 5.61593 5.67986 5.70337 5.82383 5.93113 6.04446 6.08866 6.13811 6.15913 6.23841 6.26268 6.36854 6.91225 7.30939 7.48922 7.55564 8.28078 8.52254 8.97676 9.31947 9.79315 10.73108 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.031447 B = 0.009065 C = 0.008467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.174441 B = 3088.018835 C = 3306.296008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.476 5.476 3 C -0.315 4.315 4 H 0.107 0.893 5 C 0.056 3.944 6 N -0.866 5.866 7 Si 0.881 3.119 8 H -0.277 1.277 9 H -0.288 1.288 10 H -0.266 1.266 11 C 0.480 3.520 12 O -0.542 6.542 13 C -0.110 4.110 14 H 0.088 0.912 15 C 0.059 3.941 16 N -0.652 5.652 17 C 0.069 3.931 18 C -0.074 4.074 19 C 0.013 3.987 20 N -0.636 5.636 21 C 0.021 3.979 22 H 0.045 0.955 23 H 0.054 0.946 24 H 0.065 0.935 25 H 0.273 0.727 26 H 0.038 0.962 27 H 0.090 0.910 28 H 0.331 0.669 29 H 0.085 0.915 30 H 0.040 0.960 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.317 0.683 34 H 0.090 0.910 35 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.815 -13.022 0.781 15.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.200 5.200 3 C -0.442 4.442 4 H 0.124 0.876 5 C -0.149 4.149 6 N -0.503 5.503 7 Si 0.709 3.291 8 H -0.205 1.205 9 H -0.215 1.215 10 H -0.191 1.191 11 C 0.268 3.732 12 O -0.421 6.421 13 C -0.133 4.133 14 H 0.106 0.894 15 C -0.071 4.071 16 N -0.280 5.280 17 C -0.060 4.060 18 C -0.076 4.076 19 C -0.117 4.117 20 N -0.261 5.261 21 C -0.108 4.108 22 H 0.063 0.937 23 H 0.072 0.928 24 H 0.083 0.917 25 H 0.084 0.916 26 H 0.056 0.944 27 H 0.108 0.892 28 H 0.146 0.854 29 H 0.104 0.896 30 H 0.058 0.942 31 H 0.088 0.912 32 H 0.104 0.896 33 H 0.129 0.871 34 H 0.109 0.891 35 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.539 -12.961 1.498 14.594 hybrid contribution -1.838 0.353 -1.696 2.526 sum -8.377 -12.608 -0.198 15.138 Atomic orbital electron populations 1.22042 0.84098 1.01483 1.00415 1.43713 1.03566 1.05836 1.66858 1.19068 1.09143 0.85274 1.30724 0.87555 1.25350 0.97613 0.94843 0.97061 1.69741 1.43754 0.97982 1.38838 0.86934 0.80397 0.78810 0.82961 1.20481 1.21548 1.19051 1.19805 0.87931 0.83958 0.81516 1.90592 1.13702 1.86431 1.51382 1.22116 0.99363 0.95554 0.96271 0.89428 1.22779 0.96621 0.94296 0.93413 1.63735 1.34196 1.20600 1.09517 1.22493 0.92349 0.93850 0.97327 1.22184 0.95197 0.96422 0.93782 1.23760 0.95341 1.01800 0.90844 1.66926 1.06206 1.35787 1.17142 1.23754 0.95272 0.98204 0.93602 0.93669 0.92755 0.91651 0.91647 0.94426 0.89162 0.85384 0.89629 0.94167 0.91195 0.89571 0.87106 0.89146 0.89903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.22 8.19 59.84 0.49 1.71 16 2 N -0.48 -11.31 2.11 -122.19 -0.26 -11.57 16 3 C -0.32 -8.88 9.44 -14.94 -0.14 -9.02 16 4 H 0.11 3.40 7.84 -52.49 -0.41 2.99 16 5 C 0.06 1.56 5.32 -17.47 -0.09 1.46 16 6 N -0.87 -25.10 13.96 55.50 0.77 -24.32 16 7 Si 0.88 20.40 24.84 -169.99 -4.22 16.17 16 8 H -0.28 -5.96 6.69 56.52 0.38 -5.58 16 9 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 10 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 11 C 0.48 10.97 4.76 -10.98 -0.05 10.92 16 12 O -0.54 -14.65 15.97 5.55 0.09 -14.56 16 13 C -0.11 -1.91 2.62 -90.76 -0.24 -2.14 16 14 H 0.09 1.35 5.74 -51.93 -0.30 1.06 16 15 C 0.06 0.93 6.70 -1.98 -0.01 0.92 16 16 N -0.65 -9.90 7.63 -109.80 -0.84 -10.73 16 17 C 0.07 0.96 6.87 -2.57 -0.02 0.94 16 18 C -0.07 -1.13 1.16 -154.45 -0.18 -1.31 16 19 C 0.01 0.17 8.10 -3.20 -0.03 0.14 16 20 N -0.64 -8.76 8.53 -121.82 -1.04 -9.80 16 21 C 0.02 0.36 7.30 -3.20 -0.02 0.34 16 22 H 0.04 0.77 7.47 -51.93 -0.39 0.38 16 23 H 0.05 0.88 5.90 -51.93 -0.31 0.57 16 24 H 0.07 1.35 3.17 -51.93 -0.16 1.18 16 25 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 26 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.09 1.64 7.52 -51.93 -0.39 1.25 16 28 H 0.33 4.01 8.93 -39.29 -0.35 3.66 16 29 H 0.09 1.22 7.89 -51.93 -0.41 0.81 16 30 H 0.04 0.47 8.05 -51.93 -0.42 0.05 16 31 H 0.07 0.83 7.38 -51.93 -0.38 0.45 16 32 H 0.09 0.95 8.05 -51.93 -0.42 0.53 16 33 H 0.32 3.97 8.92 -39.30 -0.35 3.62 16 34 H 0.09 1.62 8.02 -51.92 -0.42 1.20 16 35 H 0.08 1.60 5.84 -51.93 -0.30 1.30 16 LS Contribution 271.55 15.07 4.09 4.09 Total: -1.00 -31.96 271.55 -6.28 -38.25 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -4.59 Total: 8.52 kcal Atomic # 6 Polarization: 4.25 SS G_CDS: -0.29 Total: 3.96 kcal Atomic # 7 Polarization: -55.06 SS G_CDS: -1.36 Total: -56.42 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: 0.09 Total: -14.56 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -4.22 Total: 16.17 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -31.96 -6.28 -38.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160583918.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.867 kcal (2) G-P(sol) polarization free energy of solvation -31.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds