Wall clock time and date at job start Sun Mar 29 2020 22:41:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.37092 * 120.00244 * 2 1 4 4 H 1.08002 * 119.99985 * 144.01419 * 3 2 1 5 5 C 1.38951 * 120.00225 * 324.02266 * 3 2 1 6 6 N 1.31405 * 120.00533 * 159.37739 * 5 3 2 7 7 Si 1.86804 * 119.99524 * 339.37728 * 5 3 2 8 8 H 1.48497 * 109.47170 * 95.34084 * 7 5 3 9 9 H 1.48504 * 109.47150 * 215.34273 * 7 5 3 10 10 H 1.48499 * 109.47010 * 335.33815 * 7 5 3 11 11 C 1.34780 * 120.00209 * 180.02562 * 2 1 3 12 12 O 1.21288 * 120.00135 * 184.74151 * 11 2 1 13 13 C 1.50707 * 119.99594 * 4.74110 * 11 2 1 14 14 H 1.08994 * 110.36292 * 27.24620 * 13 11 2 15 15 C 1.54656 * 110.40345 * 149.70576 * 13 11 2 16 16 N 1.48651 * 104.65121 * 95.08438 * 15 13 11 17 17 C 1.48813 * 104.40109 * 38.87602 * 16 15 13 18 18 C 1.53272 * 110.40329 * 264.90669 * 13 11 2 19 19 C 1.52851 * 115.77717 * 111.60795 * 18 13 11 20 20 N 1.48171 * 85.83770 * 219.38438 * 19 18 13 21 21 C 1.48163 * 90.95743 * 23.89996 * 20 19 18 22 22 H 1.09004 * 109.47307 * 265.17347 * 1 2 3 23 23 H 1.09006 * 109.47177 * 145.17958 * 1 2 3 24 24 H 1.09001 * 109.47370 * 25.17663 * 1 2 3 25 25 H 0.97001 * 120.00255 * 179.97438 * 6 5 3 26 26 H 1.09003 * 110.39781 * 213.88139 * 15 13 11 27 27 H 1.09006 * 110.39589 * 336.28736 * 15 13 11 28 28 H 1.00901 * 110.99286 * 158.53534 * 16 15 13 29 29 H 1.09004 * 110.45828 * 202.77026 * 17 16 15 30 30 H 1.08993 * 110.46122 * 80.18835 * 17 16 15 31 31 H 1.08996 * 113.81619 * 333.61485 * 19 18 13 32 32 H 1.09005 * 113.81246 * 105.15424 * 19 18 13 33 33 H 1.00889 * 111.00101 * 136.87878 * 20 19 18 34 34 H 1.09007 * 113.82043 * 221.87514 * 21 20 19 35 35 H 1.09006 * 113.81755 * 90.33500 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1504 1.1872 0.0000 4 1 3.0759 1.2764 0.5496 5 6 1.6546 2.2759 -0.7069 6 7 2.0505 3.4917 -0.4040 7 14 0.4249 2.0109 -2.0879 8 1 -0.9535 2.1837 -1.5633 9 1 0.6715 3.0009 -3.1670 10 1 0.5792 0.6376 -2.6315 11 6 2.1389 -1.1672 -0.0005 12 8 3.3486 -1.1690 0.0863 13 6 1.3892 -2.4701 -0.1090 14 1 0.4486 -2.3233 -0.6398 15 6 2.2553 -3.5326 -0.8250 16 7 2.9079 -4.2895 0.2754 17 6 1.8536 -4.4082 1.3189 18 6 1.1312 -3.0557 1.2838 19 6 -0.3281 -3.0714 1.7384 20 7 0.1963 -2.6980 3.0729 21 6 1.4160 -2.1218 2.4600 22 1 -0.3634 -0.0865 1.0240 23 1 -0.3634 -0.8437 -0.5868 24 1 -0.3634 0.9300 -0.4372 25 1 1.7046 4.2516 -0.8978 26 1 1.6280 -4.1947 -1.4219 27 1 3.0057 -3.0511 -1.4523 28 1 3.2082 -5.1995 -0.0404 29 1 2.3034 -4.5747 2.2977 30 1 1.1635 -5.2154 1.0732 31 1 -0.9418 -2.2991 1.2748 32 1 -0.7883 -4.0590 1.7068 33 1 -0.3705 -1.9784 3.4957 34 1 2.3336 -2.3594 2.9984 35 1 1.3270 -1.0637 2.2135 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160583918.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:41:04 Heat of formation + Delta-G solvation = 4.217907 kcal Electronic energy + Delta-G solvation = -18446.527586 eV Core-core repulsion = 15673.374798 eV Total energy + Delta-G solvation = -2773.152788 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.13392 -39.68478 -37.38327 -36.46170 -34.15281 -31.37341 -29.31807 -28.23616 -27.35162 -26.71001 -24.27909 -23.28827 -20.78900 -19.39971 -18.94629 -18.25079 -17.98262 -17.42659 -16.58729 -15.82129 -15.69057 -15.51650 -15.13281 -14.66114 -14.58495 -14.31764 -13.93408 -13.72612 -13.49755 -13.20528 -12.88208 -12.67625 -12.51817 -12.33407 -12.14710 -11.79691 -11.62758 -11.60353 -11.04067 -10.24562 -9.91629 -9.70653 -9.38554 -8.51082 -6.13650 1.17566 1.31946 1.43959 1.95001 2.16665 2.64558 2.91216 3.00501 3.23833 3.39206 3.69729 3.91824 3.99934 4.05279 4.18907 4.30949 4.40811 4.45908 4.58642 4.60822 4.64764 4.67817 4.84200 4.87034 4.97045 5.03066 5.05166 5.13538 5.52937 5.80909 6.03270 6.25054 6.52814 6.58955 6.95557 7.30780 7.91854 8.66771 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.031447 B = 0.009065 C = 0.008467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.174441 B = 3088.018835 C = 3306.296008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.487 5.487 3 C -0.333 4.333 4 H 0.039 0.961 5 C 0.005 3.995 6 N -0.916 5.916 7 Si 0.958 3.042 8 H -0.239 1.239 9 H -0.293 1.293 10 H -0.254 1.254 11 C 0.477 3.523 12 O -0.600 6.600 13 C -0.104 4.104 14 H 0.119 0.881 15 C 0.060 3.940 16 N -0.680 5.680 17 C 0.074 3.926 18 C -0.075 4.075 19 C 0.027 3.973 20 N -0.630 5.630 21 C 0.014 3.986 22 H 0.066 0.934 23 H 0.097 0.903 24 H 0.056 0.944 25 H 0.279 0.721 26 H 0.082 0.918 27 H 0.056 0.944 28 H 0.348 0.652 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.117 0.883 33 H 0.326 0.674 34 H 0.064 0.936 35 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.759 -15.723 -0.531 19.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.210 5.210 3 C -0.461 4.461 4 H 0.057 0.943 5 C -0.196 4.196 6 N -0.554 5.554 7 Si 0.781 3.219 8 H -0.164 1.164 9 H -0.220 1.220 10 H -0.177 1.177 11 C 0.267 3.733 12 O -0.483 6.483 13 C -0.126 4.126 14 H 0.137 0.863 15 C -0.069 4.069 16 N -0.310 5.310 17 C -0.054 4.054 18 C -0.077 4.077 19 C -0.103 4.103 20 N -0.255 5.255 21 C -0.117 4.117 22 H 0.085 0.915 23 H 0.115 0.885 24 H 0.074 0.926 25 H 0.089 0.911 26 H 0.100 0.900 27 H 0.075 0.925 28 H 0.165 0.835 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.103 0.897 32 H 0.135 0.865 33 H 0.138 0.862 34 H 0.083 0.917 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.524 -15.685 0.208 18.890 hybrid contribution -0.474 1.208 -1.165 1.744 sum -10.998 -14.478 -0.957 18.206 Atomic orbital electron populations 1.22286 0.80790 1.02755 1.02668 1.43789 1.05583 1.04581 1.67023 1.18622 1.08133 0.88036 1.31357 0.94334 1.26223 1.00416 0.93783 0.99204 1.69876 1.46114 0.99212 1.40228 0.85722 0.79039 0.78974 0.78155 1.16399 1.22027 1.17728 1.20841 0.87665 0.85606 0.79201 1.90557 1.16683 1.87557 1.53486 1.22137 0.99874 0.92226 0.98402 0.86334 1.22740 0.96211 0.94497 0.93464 1.63613 1.35440 1.22020 1.09950 1.22491 0.92423 0.93996 0.96525 1.22310 0.97610 0.96316 0.91456 1.23862 0.93404 1.03915 0.89077 1.66897 1.05172 1.35371 1.18055 1.23542 0.95869 0.96983 0.95296 0.91529 0.88452 0.92574 0.91124 0.89965 0.92549 0.83462 0.90624 0.90486 0.89672 0.86480 0.86152 0.91718 0.93082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.01 8.19 127.77 1.05 3.06 16 2 N -0.49 -23.25 2.11 -658.89 -1.39 -24.64 16 3 C -0.33 -19.83 9.44 84.04 0.79 -19.04 16 4 H 0.04 2.73 7.84 -2.91 -0.02 2.71 16 5 C 0.00 0.28 5.32 84.93 0.45 0.73 16 6 N -0.92 -55.27 13.96 21.66 0.30 -54.97 16 7 Si 0.96 41.28 24.84 68.60 1.70 42.98 16 8 H -0.24 -8.85 6.69 99.48 0.67 -8.18 16 9 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 10 H -0.25 -10.35 7.11 99.48 0.71 -9.64 16 11 C 0.48 22.04 4.76 87.66 0.42 22.46 16 12 O -0.60 -34.35 15.97 -3.06 -0.05 -34.40 16 13 C -0.10 -3.31 2.62 -10.88 -0.03 -3.34 16 14 H 0.12 3.00 5.74 -2.39 -0.01 2.99 16 15 C 0.06 1.77 6.70 86.53 0.58 2.35 16 16 N -0.68 -19.33 7.63 -501.30 -3.82 -23.15 16 17 C 0.07 1.83 6.87 86.06 0.59 2.42 16 18 C -0.08 -2.07 1.16 -52.01 -0.06 -2.13 16 19 C 0.03 0.55 8.10 86.01 0.70 1.25 16 20 N -0.63 -15.66 8.53 -539.34 -4.60 -20.26 16 21 C 0.01 0.46 7.30 86.01 0.63 1.08 16 22 H 0.07 2.06 7.47 -2.38 -0.02 2.04 16 23 H 0.10 2.58 5.90 -2.38 -0.01 2.57 16 24 H 0.06 2.10 3.17 -2.39 -0.01 2.09 16 25 H 0.28 15.39 8.31 -92.71 -0.77 14.62 16 26 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.06 2.03 7.52 -2.38 -0.02 2.01 16 28 H 0.35 7.59 8.93 -89.69 -0.80 6.79 16 29 H 0.08 2.02 7.89 -2.39 -0.02 2.00 16 30 H 0.08 1.36 8.05 -2.39 -0.02 1.34 16 31 H 0.09 1.49 7.38 -2.39 -0.02 1.48 16 32 H 0.12 1.75 8.05 -2.38 -0.02 1.73 16 33 H 0.33 7.33 8.92 -89.70 -0.80 6.53 16 34 H 0.06 2.44 8.02 -2.38 -0.02 2.42 16 35 H 0.05 2.03 5.84 -2.38 -0.01 2.01 16 Total: -1.00 -77.23 271.55 -3.25 -80.48 By element: Atomic # 1 Polarization: 25.62 SS G_CDS: -0.51 Total: 25.10 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: 5.12 Total: 8.84 kcal Atomic # 7 Polarization: -113.50 SS G_CDS: -9.51 Total: -123.02 kcal Atomic # 8 Polarization: -34.35 SS G_CDS: -0.05 Total: -34.40 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 1.70 Total: 42.98 kcal Total: -77.23 -3.25 -80.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160583918.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.701 kcal (2) G-P(sol) polarization free energy of solvation -77.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds