Wall clock time and date at job start Sun Mar 29 2020 22:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37094 * 119.99657 * 2 1 4 4 H 1.08004 * 119.99626 * 152.78892 * 3 2 1 5 5 C 1.38949 * 120.00312 * 333.06194 * 3 2 1 6 6 N 1.31408 * 120.00009 * 349.79926 * 5 3 2 7 7 Si 1.86801 * 120.00234 * 169.80665 * 5 3 2 8 8 H 1.48495 * 109.47307 * 89.99844 * 7 5 3 9 9 H 1.48497 * 109.46965 * 209.99799 * 7 5 3 10 10 H 1.48500 * 109.46853 * 329.99741 * 7 5 3 11 11 C 1.34773 * 119.99858 * 179.97438 * 2 1 3 12 12 O 1.21297 * 119.99853 * 174.95706 * 11 2 1 13 13 C 1.50694 * 120.00180 * 354.95600 * 11 2 1 14 14 H 1.08996 * 110.36431 * 332.84297 * 13 11 2 15 15 C 1.54654 * 110.40772 * 210.38104 * 13 11 2 16 16 N 1.48653 * 104.64937 * 217.51556 * 15 13 11 17 17 C 1.48806 * 104.40580 * 38.87264 * 16 15 13 18 18 C 1.53272 * 110.40701 * 95.17282 * 13 11 2 19 19 C 1.52856 * 115.78021 * 349.17840 * 18 13 11 20 20 N 1.48170 * 85.83798 * 219.38396 * 19 18 13 21 21 C 1.48172 * 90.95772 * 23.89899 * 20 19 18 22 22 H 1.08999 * 109.47001 * 95.26853 * 1 2 3 23 23 H 1.09001 * 109.47333 * 215.26922 * 1 2 3 24 24 H 1.09000 * 109.47087 * 335.26923 * 1 2 3 25 25 H 0.97002 * 120.00220 * 179.97438 * 6 5 3 26 26 H 1.09005 * 110.39925 * 336.30262 * 15 13 11 27 27 H 1.08993 * 110.40227 * 98.71980 * 15 13 11 28 28 H 1.00902 * 110.99996 * 279.20571 * 16 15 13 29 29 H 1.09006 * 110.46558 * 202.77689 * 17 16 15 30 30 H 1.08997 * 110.46775 * 80.19580 * 17 16 15 31 31 H 1.09002 * 113.81485 * 333.61298 * 19 18 13 32 32 H 1.09002 * 113.81301 * 105.15493 * 19 18 13 33 33 H 1.00895 * 111.00040 * 270.92394 * 20 19 18 34 34 H 1.09005 * 113.81472 * 221.87244 * 21 20 19 35 35 H 1.08997 * 113.81570 * 90.33585 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1504 1.1873 0.0000 4 1 3.1408 1.2391 0.4277 5 6 1.5687 2.3254 -0.5451 6 7 0.4554 2.2275 -1.2363 7 14 2.3694 3.9945 -0.2957 8 1 3.3252 4.2554 -1.4018 9 1 1.3236 5.0487 -0.2862 10 1 3.0959 4.0064 0.9994 11 6 2.1388 -1.1672 0.0005 12 8 3.3483 -1.1693 -0.0918 13 6 1.3898 -2.4697 0.1158 14 1 0.4509 -2.3213 0.6492 15 6 2.2583 -3.5297 0.8326 16 7 1.9514 -4.8039 0.1313 17 6 1.8368 -4.4195 -1.3017 18 6 1.1271 -3.0600 -1.2740 19 6 1.4198 -2.1351 -2.4553 20 7 0.1949 -2.7038 -3.0649 21 6 -0.3325 -3.0654 -1.7283 22 1 -0.3633 -0.0944 -1.0233 23 1 -0.3634 -0.8390 0.5934 24 1 -0.3633 0.9334 0.4299 25 1 0.0491 3.0220 -1.6166 26 1 3.3159 -3.2856 0.7317 27 1 1.9821 -3.5989 1.8847 28 1 1.0885 -5.2036 0.4686 29 1 1.2386 -5.1506 -1.8457 30 1 2.8253 -4.3244 -1.7510 31 1 1.3401 -1.0750 -2.2146 32 1 2.3350 -2.3837 -2.9926 33 1 0.4092 -3.5291 -3.6044 34 1 -0.8013 -4.0487 -1.6913 35 1 -0.9393 -2.2852 -1.2688 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160583919.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:41:06 Heat of formation + Delta-G solvation = 23.973103 kcal Electronic energy + Delta-G solvation = -18427.301278 eV Core-core repulsion = 15655.005139 eV Total energy + Delta-G solvation = -2772.296139 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.82992 -37.90143 -35.99485 -34.55500 -31.70785 -29.62477 -27.76787 -26.29822 -25.86505 -24.51776 -23.24652 -21.78917 -19.48073 -17.74989 -16.84777 -16.68816 -16.10665 -16.04299 -14.82426 -14.38742 -14.22811 -13.67226 -13.46276 -13.02005 -12.85116 -12.40513 -12.17836 -11.69785 -11.54499 -11.49761 -11.35108 -11.14850 -11.02629 -10.85658 -10.44373 -10.36082 -10.34662 -10.00653 -9.01158 -8.73737 -8.35185 -8.11029 -7.63692 -6.31688 -3.91235 3.16487 3.25057 3.29590 3.80770 4.10433 4.20966 4.34227 4.55671 4.82802 4.96666 5.09719 5.35096 5.45357 5.48655 5.54749 5.69332 5.84804 5.92832 5.97779 6.04653 6.09543 6.19341 6.28839 6.36224 6.50119 6.65196 6.76055 6.84144 7.20556 7.42980 7.55180 7.57821 8.14809 8.48399 9.18444 9.40750 9.98061 10.72656 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.034439 B = 0.008433 C = 0.007550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.830340 B = 3319.437574 C = 3707.677350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.443 5.443 3 C -0.308 4.308 4 H 0.094 0.906 5 C 0.033 3.967 6 N -0.878 5.878 7 Si 0.924 3.076 8 H -0.277 1.277 9 H -0.283 1.283 10 H -0.270 1.270 11 C 0.461 3.539 12 O -0.585 6.585 13 C -0.129 4.129 14 H 0.086 0.914 15 C 0.052 3.948 16 N -0.665 5.665 17 C 0.063 3.937 18 C -0.147 4.147 19 C 0.037 3.963 20 N -0.655 5.655 21 C 0.031 3.969 22 H 0.056 0.944 23 H 0.022 0.978 24 H 0.073 0.927 25 H 0.268 0.732 26 H 0.099 0.901 27 H 0.069 0.931 28 H 0.330 0.670 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.118 0.882 32 H 0.068 0.932 33 H 0.327 0.673 34 H 0.067 0.933 35 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.867 -9.654 0.713 10.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.162 5.162 3 C -0.436 4.436 4 H 0.112 0.888 5 C -0.171 4.171 6 N -0.517 5.517 7 Si 0.751 3.249 8 H -0.203 1.203 9 H -0.209 1.209 10 H -0.195 1.195 11 C 0.249 3.751 12 O -0.469 6.469 13 C -0.153 4.153 14 H 0.104 0.896 15 C -0.077 4.077 16 N -0.290 5.290 17 C -0.066 4.066 18 C -0.150 4.150 19 C -0.093 4.093 20 N -0.281 5.281 21 C -0.099 4.099 22 H 0.074 0.926 23 H 0.041 0.959 24 H 0.091 0.909 25 H 0.078 0.922 26 H 0.117 0.883 27 H 0.088 0.912 28 H 0.145 0.855 29 H 0.088 0.912 30 H 0.103 0.897 31 H 0.136 0.864 32 H 0.086 0.914 33 H 0.140 0.860 34 H 0.085 0.915 35 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -3.192 -9.145 0.266 9.689 hybrid contribution -0.234 0.697 0.383 0.829 sum -3.425 -8.447 0.649 9.139 Atomic orbital electron populations 1.21567 0.81594 0.99687 1.00537 1.43562 1.05267 1.04647 1.62686 1.19574 1.02112 0.84681 1.37223 0.88784 1.25362 0.96557 1.00126 0.95027 1.69965 1.19217 1.30033 1.32509 0.85962 0.78671 0.81255 0.78993 1.20308 1.20873 1.19514 1.19633 0.87902 0.84213 0.83366 1.90508 1.14245 1.86657 1.55509 1.22479 1.00161 0.96387 0.96301 0.89627 1.23081 1.01999 0.86003 0.96646 1.63396 1.37590 1.25083 1.02923 1.22740 1.00345 0.92508 0.91055 1.24192 0.97101 0.97684 0.96023 1.23720 0.92526 1.01276 0.91782 1.65193 1.20623 1.28187 1.14117 1.23650 0.94504 1.00792 0.90980 0.92599 0.95928 0.90853 0.92213 0.88301 0.91246 0.85538 0.91180 0.89725 0.86372 0.91372 0.85973 0.91500 0.88202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.42 7.83 59.85 0.47 2.89 16 2 N -0.44 -11.07 2.52 -122.19 -0.31 -11.38 16 3 C -0.31 -8.48 9.16 -14.94 -0.14 -8.62 16 4 H 0.09 2.72 7.54 -52.48 -0.40 2.32 16 5 C 0.03 0.87 5.08 -17.47 -0.09 0.78 16 6 N -0.88 -23.31 10.86 55.50 0.60 -22.71 16 7 Si 0.92 20.78 29.56 -169.99 -5.03 15.75 16 8 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 9 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 10 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 11 C 0.46 10.88 4.83 -10.99 -0.05 10.82 16 12 O -0.58 -15.87 15.53 5.54 0.09 -15.78 16 13 C -0.13 -2.32 2.62 -90.76 -0.24 -2.56 16 14 H 0.09 1.44 5.75 -51.93 -0.30 1.14 16 15 C 0.05 0.86 7.00 -1.98 -0.01 0.85 16 16 N -0.67 -9.27 7.63 -109.80 -0.84 -10.11 16 17 C 0.06 0.88 6.81 -2.57 -0.02 0.87 16 18 C -0.15 -2.32 1.16 -154.44 -0.18 -2.50 16 19 C 0.04 0.68 7.38 -3.20 -0.02 0.66 16 20 N -0.66 -10.31 8.55 -121.80 -1.04 -11.35 16 21 C 0.03 0.44 8.02 -3.19 -0.03 0.41 16 22 H 0.06 1.28 7.14 -51.93 -0.37 0.91 16 23 H 0.02 0.42 5.92 -51.93 -0.31 0.11 16 24 H 0.07 1.72 6.84 -51.93 -0.36 1.37 16 25 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 26 H 0.10 1.93 6.91 -51.93 -0.36 1.57 16 27 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 28 H 0.33 3.85 8.93 -39.29 -0.35 3.50 16 29 H 0.07 0.80 7.89 -51.93 -0.41 0.39 16 30 H 0.08 1.29 8.05 -51.93 -0.42 0.87 16 31 H 0.12 2.75 5.88 -51.93 -0.31 2.44 16 32 H 0.07 1.24 8.05 -51.93 -0.42 0.82 16 33 H 0.33 4.29 8.84 -39.29 -0.35 3.94 16 34 H 0.07 0.77 8.02 -51.93 -0.42 0.36 16 35 H 0.10 1.54 7.27 -51.93 -0.38 1.16 16 LS Contribution 275.34 15.07 4.15 4.15 Total: -1.00 -29.84 275.34 -7.37 -37.21 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -4.69 Total: 10.62 kcal Atomic # 6 Polarization: 3.90 SS G_CDS: -0.31 Total: 3.59 kcal Atomic # 7 Polarization: -53.96 SS G_CDS: -1.58 Total: -55.54 kcal Atomic # 8 Polarization: -15.87 SS G_CDS: 0.09 Total: -15.78 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.03 Total: 15.75 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -29.84 -7.37 -37.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160583919.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.186 kcal (2) G-P(sol) polarization free energy of solvation -29.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds