Wall clock time and date at job start Sun Mar 29 2020 22:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37094 * 119.99657 * 2 1 4 4 H 1.08004 * 119.99626 * 152.78892 * 3 2 1 5 5 C 1.38949 * 120.00312 * 333.06194 * 3 2 1 6 6 N 1.31408 * 120.00009 * 349.79926 * 5 3 2 7 7 Si 1.86801 * 120.00234 * 169.80665 * 5 3 2 8 8 H 1.48495 * 109.47307 * 89.99844 * 7 5 3 9 9 H 1.48497 * 109.46965 * 209.99799 * 7 5 3 10 10 H 1.48500 * 109.46853 * 329.99741 * 7 5 3 11 11 C 1.34773 * 119.99858 * 179.97438 * 2 1 3 12 12 O 1.21297 * 119.99853 * 174.95706 * 11 2 1 13 13 C 1.50694 * 120.00180 * 354.95600 * 11 2 1 14 14 H 1.08996 * 110.36431 * 332.84297 * 13 11 2 15 15 C 1.54654 * 110.40772 * 210.38104 * 13 11 2 16 16 N 1.48653 * 104.64937 * 217.51556 * 15 13 11 17 17 C 1.48806 * 104.40580 * 38.87264 * 16 15 13 18 18 C 1.53272 * 110.40701 * 95.17282 * 13 11 2 19 19 C 1.52856 * 115.78021 * 349.17840 * 18 13 11 20 20 N 1.48170 * 85.83798 * 219.38396 * 19 18 13 21 21 C 1.48172 * 90.95772 * 23.89899 * 20 19 18 22 22 H 1.08999 * 109.47001 * 95.26853 * 1 2 3 23 23 H 1.09001 * 109.47333 * 215.26922 * 1 2 3 24 24 H 1.09000 * 109.47087 * 335.26923 * 1 2 3 25 25 H 0.97002 * 120.00220 * 179.97438 * 6 5 3 26 26 H 1.09005 * 110.39925 * 336.30262 * 15 13 11 27 27 H 1.08993 * 110.40227 * 98.71980 * 15 13 11 28 28 H 1.00902 * 110.99996 * 279.20571 * 16 15 13 29 29 H 1.09006 * 110.46558 * 202.77689 * 17 16 15 30 30 H 1.08997 * 110.46775 * 80.19580 * 17 16 15 31 31 H 1.09002 * 113.81485 * 333.61298 * 19 18 13 32 32 H 1.09002 * 113.81301 * 105.15493 * 19 18 13 33 33 H 1.00895 * 111.00040 * 270.92394 * 20 19 18 34 34 H 1.09005 * 113.81472 * 221.87244 * 21 20 19 35 35 H 1.08997 * 113.81570 * 90.33585 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1504 1.1873 0.0000 4 1 3.1408 1.2391 0.4277 5 6 1.5687 2.3254 -0.5451 6 7 0.4554 2.2275 -1.2363 7 14 2.3694 3.9945 -0.2957 8 1 3.3252 4.2554 -1.4018 9 1 1.3236 5.0487 -0.2862 10 1 3.0959 4.0064 0.9994 11 6 2.1388 -1.1672 0.0005 12 8 3.3483 -1.1693 -0.0918 13 6 1.3898 -2.4697 0.1158 14 1 0.4509 -2.3213 0.6492 15 6 2.2583 -3.5297 0.8326 16 7 1.9514 -4.8039 0.1313 17 6 1.8368 -4.4195 -1.3017 18 6 1.1271 -3.0600 -1.2740 19 6 1.4198 -2.1351 -2.4553 20 7 0.1949 -2.7038 -3.0649 21 6 -0.3325 -3.0654 -1.7283 22 1 -0.3633 -0.0944 -1.0233 23 1 -0.3634 -0.8390 0.5934 24 1 -0.3633 0.9334 0.4299 25 1 0.0491 3.0220 -1.6166 26 1 3.3159 -3.2856 0.7317 27 1 1.9821 -3.5989 1.8847 28 1 1.0885 -5.2036 0.4686 29 1 1.2386 -5.1506 -1.8457 30 1 2.8253 -4.3244 -1.7510 31 1 1.3401 -1.0750 -2.2146 32 1 2.3350 -2.3837 -2.9926 33 1 0.4092 -3.5291 -3.6044 34 1 -0.8013 -4.0487 -1.6913 35 1 -0.9393 -2.2852 -1.2688 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160583919.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:41:06 Heat of formation + Delta-G solvation = -1.713757 kcal Electronic energy + Delta-G solvation = -18428.415143 eV Core-core repulsion = 15655.005139 eV Total energy + Delta-G solvation = -2773.410005 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.23009 -39.67299 -37.35683 -36.45632 -33.70597 -31.10474 -29.00287 -28.16827 -27.20450 -26.38838 -24.52126 -23.30673 -21.02310 -19.33942 -18.75619 -18.17150 -17.63460 -17.35376 -16.68557 -16.09063 -15.92060 -15.14158 -14.78283 -14.54693 -14.28835 -13.99248 -13.66446 -13.50485 -13.28421 -13.18069 -12.79666 -12.62367 -12.55664 -12.50216 -12.24605 -12.13159 -11.65704 -11.49343 -11.01167 -10.32399 -9.86911 -9.62569 -9.37776 -8.33596 -6.01471 1.35051 1.38446 1.50487 2.00223 2.25506 2.88637 2.97578 3.07368 3.24192 3.39460 3.63773 4.02857 4.12030 4.17345 4.18383 4.37507 4.44816 4.60563 4.70058 4.73531 4.77644 4.88626 4.90155 4.98131 5.04308 5.13397 5.15754 5.38257 5.42190 5.52471 6.11148 6.43202 6.48265 6.49817 7.17286 7.47197 8.04617 8.68685 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.034439 B = 0.008433 C = 0.007550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.830340 B = 3319.437574 C = 3707.677350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.125 3.875 2 N -0.458 5.458 3 C -0.343 4.343 4 H 0.067 0.933 5 C -0.001 4.001 6 N -0.893 5.893 7 Si 0.985 3.015 8 H -0.280 1.280 9 H -0.267 1.267 10 H -0.269 1.269 11 C 0.458 3.542 12 O -0.630 6.630 13 C -0.124 4.124 14 H 0.104 0.896 15 C 0.058 3.942 16 N -0.656 5.656 17 C 0.069 3.931 18 C -0.137 4.137 19 C 0.028 3.972 20 N -0.660 5.660 21 C 0.042 3.958 22 H 0.042 0.958 23 H 0.062 0.938 24 H 0.054 0.946 25 H 0.272 0.728 26 H 0.062 0.938 27 H 0.091 0.909 28 H 0.351 0.649 29 H 0.110 0.890 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.346 0.654 34 H 0.110 0.890 35 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.580 -11.420 0.902 12.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.018 4.018 2 N -0.176 5.176 3 C -0.471 4.471 4 H 0.085 0.915 5 C -0.203 4.203 6 N -0.531 5.531 7 Si 0.809 3.191 8 H -0.205 1.205 9 H -0.192 1.192 10 H -0.194 1.194 11 C 0.247 3.753 12 O -0.518 6.518 13 C -0.148 4.148 14 H 0.122 0.878 15 C -0.072 4.072 16 N -0.283 5.283 17 C -0.060 4.060 18 C -0.140 4.140 19 C -0.103 4.103 20 N -0.287 5.287 21 C -0.087 4.087 22 H 0.060 0.940 23 H 0.080 0.920 24 H 0.073 0.927 25 H 0.082 0.918 26 H 0.080 0.920 27 H 0.110 0.890 28 H 0.168 0.832 29 H 0.128 0.872 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.161 0.839 34 H 0.129 0.871 35 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.948 -10.939 0.454 12.014 hybrid contribution 0.322 1.216 0.275 1.287 sum -4.626 -9.723 0.729 10.792 Atomic orbital electron populations 1.21432 0.79897 1.00279 1.00192 1.43777 1.06375 1.04530 1.62962 1.19527 1.01948 0.86726 1.38932 0.91497 1.26069 0.97030 1.02891 0.94282 1.70045 1.19749 1.30993 1.32340 0.85065 0.78049 0.77397 0.78616 1.20550 1.19155 1.19395 1.20576 0.87678 0.85683 0.81323 1.90469 1.16570 1.87643 1.57116 1.22509 1.00295 0.93517 0.98447 0.87758 1.22918 0.99578 0.86612 0.98091 1.63282 1.39087 1.23276 1.02617 1.22736 0.99857 0.92073 0.91371 1.24233 0.98698 0.97790 0.93320 1.23414 0.93522 0.99144 0.94215 1.65068 1.18967 1.29482 1.15230 1.23665 0.93087 1.02682 0.89264 0.93956 0.92021 0.92717 0.91833 0.91954 0.89041 0.83170 0.87233 0.91582 0.91459 0.92135 0.83861 0.87146 0.89329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 5.53 7.83 127.77 1.00 6.53 16 2 N -0.46 -23.61 2.52 -658.90 -1.66 -25.27 16 3 C -0.34 -19.72 9.16 84.04 0.77 -18.95 16 4 H 0.07 4.11 7.54 -2.91 -0.02 4.09 16 5 C 0.00 -0.03 5.08 84.93 0.43 0.40 16 6 N -0.89 -48.16 10.86 21.66 0.24 -47.92 16 7 Si 0.98 43.31 29.56 68.60 2.03 45.34 16 8 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 9 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 10 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 11 C 0.46 22.19 4.83 87.66 0.42 22.61 16 12 O -0.63 -35.97 15.53 -3.08 -0.05 -36.01 16 13 C -0.12 -4.30 2.62 -10.89 -0.03 -4.33 16 14 H 0.10 3.21 5.75 -2.39 -0.01 3.19 16 15 C 0.06 1.83 7.00 86.53 0.61 2.44 16 16 N -0.66 -16.04 7.63 -501.31 -3.82 -19.86 16 17 C 0.07 1.71 6.81 86.06 0.59 2.30 16 18 C -0.14 -4.07 1.16 -52.01 -0.06 -4.13 16 19 C 0.03 1.03 7.38 86.01 0.64 1.67 16 20 N -0.66 -19.42 8.55 -539.27 -4.61 -24.03 16 21 C 0.04 1.06 8.02 86.01 0.69 1.75 16 22 H 0.04 1.97 7.14 -2.39 -0.02 1.95 16 23 H 0.06 2.18 5.92 -2.39 -0.01 2.17 16 24 H 0.05 2.59 6.84 -2.39 -0.02 2.57 16 25 H 0.27 13.83 8.31 -92.71 -0.77 13.06 16 26 H 0.06 2.46 6.91 -2.38 -0.02 2.44 16 27 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 28 H 0.35 6.42 8.93 -89.69 -0.80 5.62 16 29 H 0.11 1.90 7.89 -2.38 -0.02 1.88 16 30 H 0.07 1.91 8.05 -2.39 -0.02 1.89 16 31 H 0.07 3.26 5.88 -2.39 -0.01 3.24 16 32 H 0.06 2.27 8.05 -2.39 -0.02 2.25 16 33 H 0.35 8.00 8.84 -89.70 -0.79 7.21 16 34 H 0.11 1.87 8.02 -2.38 -0.02 1.85 16 35 H 0.09 2.46 7.27 -2.39 -0.02 2.45 16 Total: -1.00 -68.80 275.34 -3.29 -72.10 By element: Atomic # 1 Polarization: 25.85 SS G_CDS: -0.47 Total: 25.38 kcal Atomic # 6 Polarization: 5.23 SS G_CDS: 5.05 Total: 10.29 kcal Atomic # 7 Polarization: -107.23 SS G_CDS: -9.86 Total: -117.08 kcal Atomic # 8 Polarization: -35.97 SS G_CDS: -0.05 Total: -36.01 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -68.80 -3.29 -72.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160583919.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.384 kcal (2) G-P(sol) polarization free energy of solvation -68.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds