Wall clock time and date at job start Sun Mar 29 2020 22:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.37095 * 120.00092 * 2 1 4 4 H 1.08004 * 120.00349 * 205.14032 * 3 2 1 5 5 C 1.38952 * 120.00208 * 25.14542 * 3 2 1 6 6 N 1.31411 * 119.99672 * 11.67912 * 5 3 2 7 7 Si 1.86799 * 120.00356 * 191.68547 * 5 3 2 8 8 H 1.48496 * 109.47424 * 59.99515 * 7 5 3 9 9 H 1.48498 * 109.47193 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.46785 * 299.99571 * 7 5 3 11 11 C 1.34775 * 120.00000 * 180.02562 * 2 1 3 12 12 O 1.21291 * 120.00224 * 179.97438 * 11 2 1 13 13 C 1.50702 * 119.99952 * 0.02562 * 11 2 1 14 14 H 1.08994 * 110.70215 * 43.31816 * 13 11 2 15 15 C 1.55106 * 110.78420 * 279.99827 * 13 11 2 16 16 C 1.54541 * 102.63677 * 281.54962 * 15 13 11 17 17 H 1.09001 * 112.43837 * 98.77437 * 16 15 13 18 18 C 1.54367 * 109.35329 * 224.41591 * 16 15 13 19 19 N 1.49076 * 104.22546 * 137.80429 * 18 16 15 20 20 C 1.48708 * 103.35673 * 318.01365 * 19 18 16 21 21 C 1.54506 * 104.54874 * 41.42608 * 20 19 18 22 22 H 1.09001 * 111.94393 * 97.01716 * 21 20 19 23 23 N 1.48008 * 108.56121 * 222.01631 * 21 20 19 24 24 H 1.08994 * 109.46706 * 265.15236 * 1 2 3 25 25 H 1.09005 * 109.47021 * 25.15257 * 1 2 3 26 26 H 1.08997 * 109.47318 * 145.15256 * 1 2 3 27 27 H 0.96997 * 120.00320 * 180.02562 * 6 5 3 28 28 H 1.09003 * 110.77568 * 163.26474 * 15 13 11 29 29 H 1.08996 * 110.94104 * 39.91126 * 15 13 11 30 30 H 1.08998 * 110.48431 * 256.47866 * 18 16 15 31 31 H 1.08989 * 110.49001 * 19.13105 * 18 16 15 32 32 H 1.00910 * 111.14145 * 198.88991 * 19 18 16 33 33 H 1.09002 * 110.44110 * 282.62745 * 20 19 18 34 34 H 1.08998 * 110.44154 * 160.23090 * 20 19 18 35 35 H 1.00897 * 110.99795 * 258.80942 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1538 1.2316 -0.3974 5 6 1.5546 2.3336 0.5113 6 7 0.4381 2.2431 1.1984 7 14 2.3403 4.0034 0.2219 8 1 2.4259 4.2640 -1.2375 9 1 1.5155 5.0570 0.8659 10 1 3.7048 4.0166 0.8079 11 6 2.1389 -1.1672 -0.0005 12 8 3.3518 -1.1672 -0.0010 13 6 1.3854 -2.4723 -0.0017 14 1 0.5506 -2.4346 -0.7015 15 6 0.8916 -2.8240 1.4260 16 6 2.1689 -3.3747 2.0994 17 1 2.6680 -2.6285 2.7177 18 6 1.8202 -4.6552 2.8877 19 7 2.9449 -5.5870 2.5891 20 6 3.1758 -5.3913 1.1331 21 6 3.0570 -3.8652 0.9230 22 1 4.0320 -3.3778 0.9166 23 7 2.2879 -3.6188 -0.3173 24 1 -0.3632 -0.0868 1.0240 25 1 -0.3633 0.9303 -0.4368 26 1 -0.3634 -0.8433 -0.5872 27 1 0.0218 3.0433 1.5551 28 1 0.1142 -3.5872 1.3891 29 1 0.5338 -1.9346 1.9446 30 1 1.7732 -4.4446 3.9561 31 1 0.8761 -5.0731 2.5384 32 1 2.6890 -6.5424 2.7894 33 1 2.4161 -5.9156 0.5534 34 1 4.1714 -5.7374 0.8557 35 1 2.9018 -3.3844 -1.0829 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160584690.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:41:02 Heat of formation + Delta-G solvation = -10.716811 kcal Electronic energy + Delta-G solvation = -17997.462920 eV Core-core repulsion = 15223.662513 eV Total energy + Delta-G solvation = -2773.800406 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.95782 -37.86772 -34.97579 -34.16324 -31.71780 -30.68529 -28.34756 -26.59097 -26.03137 -24.58931 -22.03296 -21.33753 -19.11261 -18.71216 -16.93140 -16.60108 -16.31397 -15.65934 -14.65784 -14.57096 -14.28787 -13.80259 -13.49622 -12.85438 -12.63465 -12.14265 -12.00633 -11.69093 -11.50689 -11.38157 -11.19824 -11.17738 -10.88112 -10.64916 -10.54154 -10.42658 -10.39270 -10.11815 -9.07259 -8.99596 -8.52648 -7.92921 -7.69243 -6.35394 -3.93012 3.16170 3.22277 3.26132 3.78450 4.10727 4.33939 4.61863 4.80053 4.87191 5.07248 5.13506 5.21444 5.50182 5.63706 5.65519 5.72087 5.83630 5.88920 5.98574 6.14353 6.21652 6.31703 6.34841 6.39545 6.53321 6.68515 6.81562 7.13455 7.16816 7.37535 7.52771 7.66509 8.10595 8.44605 9.14555 9.38391 9.93554 10.68804 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.043989 B = 0.006557 C = 0.006406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.367377 B = 4269.450433 C = 4370.153471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.439 5.439 3 C -0.308 4.308 4 H 0.096 0.904 5 C 0.032 3.968 6 N -0.882 5.882 7 Si 0.926 3.074 8 H -0.274 1.274 9 H -0.284 1.284 10 H -0.273 1.273 11 C 0.427 3.573 12 O -0.591 6.591 13 C 0.052 3.948 14 H 0.098 0.902 15 C -0.103 4.103 16 C -0.094 4.094 17 H 0.088 0.912 18 C 0.043 3.957 19 N -0.666 5.666 20 C 0.044 3.956 21 C 0.073 3.927 22 H 0.078 0.922 23 N -0.641 5.641 24 H 0.052 0.948 25 H 0.074 0.926 26 H 0.026 0.974 27 H 0.268 0.732 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.044 0.956 32 H 0.331 0.669 33 H 0.052 0.948 34 H 0.072 0.928 35 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.436 -10.439 0.502 10.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.157 5.157 3 C -0.437 4.437 4 H 0.113 0.887 5 C -0.171 4.171 6 N -0.521 5.521 7 Si 0.753 3.247 8 H -0.199 1.199 9 H -0.209 1.209 10 H -0.198 1.198 11 C 0.214 3.786 12 O -0.477 6.477 13 C -0.061 4.061 14 H 0.116 0.884 15 C -0.141 4.141 16 C -0.114 4.114 17 H 0.107 0.893 18 C -0.087 4.087 19 N -0.294 5.294 20 C -0.086 4.086 21 C -0.038 4.038 22 H 0.096 0.904 23 N -0.268 5.268 24 H 0.071 0.929 25 H 0.093 0.907 26 H 0.045 0.955 27 H 0.079 0.921 28 H 0.092 0.908 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.062 0.938 32 H 0.145 0.855 33 H 0.070 0.930 34 H 0.091 0.909 35 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -1.913 -10.440 0.934 10.655 hybrid contribution -0.045 1.322 -0.444 1.395 sum -1.958 -9.119 0.490 9.339 Atomic orbital electron populations 1.21535 0.81273 1.00030 1.00511 1.43581 1.05443 1.04768 1.61950 1.19591 1.00973 0.84453 1.38644 0.88658 1.25353 0.96575 1.00161 0.95036 1.69967 1.19071 1.29899 1.33125 0.85996 0.79100 0.80923 0.78678 1.19898 1.20893 1.19804 1.20687 0.88376 0.85501 0.84038 1.90504 1.13895 1.87026 1.56270 1.22860 0.96101 0.89166 0.98012 0.88402 1.22545 0.96559 1.01078 0.93954 1.22713 0.95888 0.96502 0.96263 0.89324 1.23124 0.92386 0.92969 1.00175 1.64102 1.38966 1.09528 1.16819 1.23017 1.00839 0.96380 0.88338 1.22938 0.97225 0.94019 0.89603 0.90397 1.64095 1.21056 1.35393 1.06285 0.92911 0.90686 0.95517 0.92148 0.90762 0.90364 0.90586 0.93796 0.85519 0.92995 0.90922 0.84588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.42 8.03 59.85 0.48 2.90 16 2 N -0.44 -11.12 3.01 -122.19 -0.37 -11.48 16 3 C -0.31 -8.58 9.23 -14.93 -0.14 -8.72 16 4 H 0.10 2.79 7.46 -52.48 -0.39 2.39 16 5 C 0.03 0.85 5.06 -17.47 -0.09 0.76 16 6 N -0.88 -23.31 10.83 55.50 0.60 -22.71 16 7 Si 0.93 20.74 29.57 -169.99 -5.03 15.72 16 8 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 9 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 10 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 11 C 0.43 10.21 6.55 -10.99 -0.07 10.14 16 12 O -0.59 -16.01 14.78 5.55 0.08 -15.93 16 13 C 0.05 0.97 3.12 -66.42 -0.21 0.76 16 14 H 0.10 1.70 6.59 -51.93 -0.34 1.36 16 15 C -0.10 -1.72 5.92 -24.81 -0.15 -1.87 16 16 C -0.09 -1.59 3.78 -87.85 -0.33 -1.93 16 17 H 0.09 1.70 8.14 -51.93 -0.42 1.27 16 18 C 0.04 0.59 7.00 -1.90 -0.01 0.57 16 19 N -0.67 -8.89 7.67 -109.08 -0.84 -9.73 16 20 C 0.04 0.62 7.12 -2.03 -0.01 0.61 16 21 C 0.07 1.26 3.47 -65.07 -0.23 1.03 16 22 H 0.08 1.55 7.58 -51.93 -0.39 1.16 16 23 N -0.64 -11.03 6.76 -95.21 -0.64 -11.68 16 24 H 0.05 1.17 7.36 -51.93 -0.38 0.79 16 25 H 0.07 1.75 6.78 -51.93 -0.35 1.40 16 26 H 0.03 0.49 6.25 -51.93 -0.32 0.16 16 27 H 0.27 6.74 8.31 -40.82 -0.34 6.41 16 28 H 0.07 1.08 7.25 -51.93 -0.38 0.70 16 29 H 0.08 1.42 7.29 -51.93 -0.38 1.04 16 30 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.04 0.55 7.25 -51.93 -0.38 0.18 16 32 H 0.33 3.56 8.93 -39.29 -0.35 3.21 16 33 H 0.05 0.71 7.97 -51.93 -0.41 0.30 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.34 6.04 8.41 -39.29 -0.33 5.71 16 LS Contribution 275.06 15.07 4.15 4.15 Total: -1.00 -29.81 275.06 -7.62 -37.43 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -4.82 Total: 9.97 kcal Atomic # 6 Polarization: 5.02 SS G_CDS: -0.76 Total: 4.26 kcal Atomic # 7 Polarization: -54.35 SS G_CDS: -1.25 Total: -55.60 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: 0.08 Total: -15.93 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.03 Total: 15.72 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -29.81 -7.62 -37.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160584690.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.711 kcal (2) G-P(sol) polarization free energy of solvation -29.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds