Wall clock time and date at job start Sun Mar 29 2020 22:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.37095 * 120.00092 * 2 1 4 4 H 1.08004 * 120.00349 * 205.14032 * 3 2 1 5 5 C 1.38952 * 120.00208 * 25.14542 * 3 2 1 6 6 N 1.31411 * 119.99672 * 11.67912 * 5 3 2 7 7 Si 1.86799 * 120.00356 * 191.68547 * 5 3 2 8 8 H 1.48496 * 109.47424 * 59.99515 * 7 5 3 9 9 H 1.48498 * 109.47193 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.46785 * 299.99571 * 7 5 3 11 11 C 1.34775 * 120.00000 * 180.02562 * 2 1 3 12 12 O 1.21291 * 120.00224 * 179.97438 * 11 2 1 13 13 C 1.50702 * 119.99952 * 0.02562 * 11 2 1 14 14 H 1.08994 * 110.70215 * 43.31816 * 13 11 2 15 15 C 1.55106 * 110.78420 * 279.99827 * 13 11 2 16 16 C 1.54541 * 102.63677 * 281.54962 * 15 13 11 17 17 H 1.09001 * 112.43837 * 98.77437 * 16 15 13 18 18 C 1.54367 * 109.35329 * 224.41591 * 16 15 13 19 19 N 1.49076 * 104.22546 * 137.80429 * 18 16 15 20 20 C 1.48708 * 103.35673 * 318.01365 * 19 18 16 21 21 C 1.54506 * 104.54874 * 41.42608 * 20 19 18 22 22 H 1.09001 * 111.94393 * 97.01716 * 21 20 19 23 23 N 1.48008 * 108.56121 * 222.01631 * 21 20 19 24 24 H 1.08994 * 109.46706 * 265.15236 * 1 2 3 25 25 H 1.09005 * 109.47021 * 25.15257 * 1 2 3 26 26 H 1.08997 * 109.47318 * 145.15256 * 1 2 3 27 27 H 0.96997 * 120.00320 * 180.02562 * 6 5 3 28 28 H 1.09003 * 110.77568 * 163.26474 * 15 13 11 29 29 H 1.08996 * 110.94104 * 39.91126 * 15 13 11 30 30 H 1.08998 * 110.48431 * 256.47866 * 18 16 15 31 31 H 1.08989 * 110.49001 * 19.13105 * 18 16 15 32 32 H 1.00910 * 111.14145 * 198.88991 * 19 18 16 33 33 H 1.09002 * 110.44110 * 282.62745 * 20 19 18 34 34 H 1.08998 * 110.44154 * 160.23090 * 20 19 18 35 35 H 1.00897 * 110.99795 * 258.80942 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1538 1.2316 -0.3974 5 6 1.5546 2.3336 0.5113 6 7 0.4381 2.2431 1.1984 7 14 2.3403 4.0034 0.2219 8 1 2.4259 4.2640 -1.2375 9 1 1.5155 5.0570 0.8659 10 1 3.7048 4.0166 0.8079 11 6 2.1389 -1.1672 -0.0005 12 8 3.3518 -1.1672 -0.0010 13 6 1.3854 -2.4723 -0.0017 14 1 0.5506 -2.4346 -0.7015 15 6 0.8916 -2.8240 1.4260 16 6 2.1689 -3.3747 2.0994 17 1 2.6680 -2.6285 2.7177 18 6 1.8202 -4.6552 2.8877 19 7 2.9449 -5.5870 2.5891 20 6 3.1758 -5.3913 1.1331 21 6 3.0570 -3.8652 0.9230 22 1 4.0320 -3.3778 0.9166 23 7 2.2879 -3.6188 -0.3173 24 1 -0.3632 -0.0868 1.0240 25 1 -0.3633 0.9303 -0.4368 26 1 -0.3634 -0.8433 -0.5872 27 1 0.0218 3.0433 1.5551 28 1 0.1142 -3.5872 1.3891 29 1 0.5338 -1.9346 1.9446 30 1 1.7732 -4.4446 3.9561 31 1 0.8761 -5.0731 2.5384 32 1 2.6890 -6.5424 2.7894 33 1 2.4161 -5.9156 0.5534 34 1 4.1714 -5.7374 0.8557 35 1 2.9018 -3.3844 -1.0829 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160584690.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:41:02 Heat of formation + Delta-G solvation = -35.011672 kcal Electronic energy + Delta-G solvation = -17998.516424 eV Core-core repulsion = 15223.662513 eV Total energy + Delta-G solvation = -2774.853911 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.47718 -39.51797 -36.79099 -35.68111 -33.69854 -32.02851 -29.80003 -28.23428 -27.49009 -26.44166 -23.64461 -22.52477 -20.51660 -20.36593 -18.92154 -18.17964 -17.85811 -17.06026 -16.45373 -16.19261 -15.96454 -15.23013 -14.98406 -14.50176 -14.07209 -13.77081 -13.45762 -13.32476 -13.16389 -12.98941 -12.77890 -12.68718 -12.53841 -12.32945 -12.17220 -11.94611 -11.88616 -11.58102 -11.03295 -10.75000 -9.68937 -9.62657 -9.53570 -8.36659 -6.03400 1.35568 1.38029 1.48284 1.94947 2.24789 3.01488 3.01699 3.13840 3.37609 3.53837 3.84627 3.90583 3.99401 4.26174 4.32366 4.38249 4.51775 4.58996 4.72687 4.81461 4.89344 4.92212 4.99468 5.03425 5.08625 5.16120 5.35749 5.40301 5.47295 5.79928 6.06897 6.18513 6.44874 6.48596 7.12943 7.43647 7.98856 8.65088 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.043989 B = 0.006557 C = 0.006406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.367377 B = 4269.450433 C = 4370.153471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.120 3.880 2 N -0.455 5.455 3 C -0.347 4.347 4 H 0.066 0.934 5 C 0.000 4.000 6 N -0.893 5.893 7 Si 0.987 3.013 8 H -0.266 1.266 9 H -0.268 1.268 10 H -0.280 1.280 11 C 0.419 3.581 12 O -0.634 6.634 13 C 0.057 3.943 14 H 0.121 0.879 15 C -0.093 4.093 16 C -0.102 4.102 17 H 0.052 0.948 18 C 0.053 3.947 19 N -0.673 5.673 20 C 0.057 3.943 21 C 0.066 3.934 22 H 0.038 0.962 23 N -0.621 5.621 24 H 0.046 0.954 25 H 0.057 0.943 26 H 0.067 0.933 27 H 0.274 0.726 28 H 0.111 0.889 29 H 0.061 0.939 30 H 0.084 0.916 31 H 0.067 0.933 32 H 0.350 0.650 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.334 0.666 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.958 -11.785 0.615 12.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.174 5.174 3 C -0.476 4.476 4 H 0.084 0.916 5 C -0.202 4.202 6 N -0.531 5.531 7 Si 0.811 3.189 8 H -0.191 1.191 9 H -0.192 1.192 10 H -0.206 1.206 11 C 0.208 3.792 12 O -0.522 6.522 13 C -0.056 4.056 14 H 0.139 0.861 15 C -0.132 4.132 16 C -0.122 4.122 17 H 0.070 0.930 18 C -0.076 4.076 19 N -0.303 5.303 20 C -0.073 4.073 21 C -0.045 4.045 22 H 0.056 0.944 23 N -0.248 5.248 24 H 0.065 0.935 25 H 0.075 0.925 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.130 0.870 29 H 0.080 0.920 30 H 0.103 0.897 31 H 0.085 0.915 32 H 0.167 0.833 33 H 0.084 0.916 34 H 0.097 0.903 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -3.472 -11.811 1.055 12.356 hybrid contribution 0.473 1.732 -0.458 1.853 sum -2.999 -10.080 0.596 10.533 Atomic orbital electron populations 1.21495 0.79332 1.00807 1.00674 1.43840 1.06759 1.04589 1.62177 1.19532 1.00755 0.86546 1.40744 0.91559 1.26066 0.97023 1.02871 0.94221 1.70029 1.19449 1.30999 1.32672 0.85096 0.77917 0.77013 0.78906 1.19125 1.19213 1.20569 1.21711 0.88265 0.86983 0.82282 1.90471 1.16071 1.87935 1.57689 1.22901 0.96224 0.86458 1.00062 0.86101 1.22558 0.97187 1.01403 0.92050 1.22691 0.95700 0.97511 0.96281 0.92953 1.23048 0.93283 0.91125 1.00182 1.64044 1.39271 1.10874 1.16142 1.22865 1.01766 0.93523 0.89123 1.22943 0.95445 0.96327 0.89793 0.94351 1.64211 1.20694 1.33827 1.06079 0.93529 0.92452 0.91472 0.91590 0.87048 0.92011 0.89738 0.91498 0.83306 0.91562 0.90320 0.85095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.19 8.03 127.77 1.03 6.22 16 2 N -0.46 -23.51 3.01 -658.89 -1.98 -25.49 16 3 C -0.35 -19.98 9.23 84.04 0.78 -19.20 16 4 H 0.07 4.10 7.46 -2.91 -0.02 4.08 16 5 C 0.00 0.02 5.06 84.93 0.43 0.45 16 6 N -0.89 -47.23 10.83 21.66 0.23 -47.00 16 7 Si 0.99 42.81 29.57 68.60 2.03 44.84 16 8 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 9 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 10 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 11 C 0.42 20.46 6.55 87.66 0.57 21.03 16 12 O -0.63 -35.90 14.78 -3.06 -0.05 -35.94 16 13 C 0.06 2.05 3.12 44.43 0.14 2.19 16 14 H 0.12 3.83 6.59 -2.39 -0.02 3.81 16 15 C -0.09 -2.96 5.92 31.84 0.19 -2.77 16 16 C -0.10 -3.39 3.78 -9.00 -0.03 -3.42 16 17 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 18 C 0.05 1.30 7.00 86.34 0.60 1.90 16 19 N -0.67 -16.13 7.67 -499.02 -3.83 -19.96 16 20 C 0.06 1.48 7.12 86.47 0.62 2.10 16 21 C 0.07 2.25 3.47 46.02 0.16 2.41 16 22 H 0.04 1.60 7.58 -2.39 -0.02 1.58 16 23 N -0.62 -20.65 6.76 -455.13 -3.08 -23.72 16 24 H 0.05 2.05 7.36 -2.39 -0.02 2.03 16 25 H 0.06 2.66 6.78 -2.38 -0.02 2.64 16 26 H 0.07 2.31 6.25 -2.39 -0.01 2.29 16 27 H 0.27 13.60 8.31 -92.71 -0.77 12.83 16 28 H 0.11 2.75 7.25 -2.39 -0.02 2.73 16 29 H 0.06 2.18 7.29 -2.39 -0.02 2.16 16 30 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.07 1.37 7.25 -2.39 -0.02 1.36 16 32 H 0.35 6.25 8.93 -89.69 -0.80 5.45 16 33 H 0.07 1.56 7.97 -2.39 -0.02 1.54 16 34 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.33 11.83 8.41 -89.70 -0.75 11.07 16 Total: -1.00 -66.56 275.06 -2.63 -69.19 By element: Atomic # 1 Polarization: 27.62 SS G_CDS: -0.44 Total: 27.18 kcal Atomic # 6 Polarization: 6.43 SS G_CDS: 4.48 Total: 10.90 kcal Atomic # 7 Polarization: -107.52 SS G_CDS: -8.65 Total: -116.17 kcal Atomic # 8 Polarization: -35.90 SS G_CDS: -0.05 Total: -35.94 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -66.56 -2.63 -69.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160584690.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.183 kcal (2) G-P(sol) polarization free energy of solvation -66.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds