Wall clock time and date at job start Sun Mar 29 2020 22:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31137 * 126.55170 * 2 1 4 4 C 1.34490 * 105.61397 * 180.12095 * 3 2 1 5 5 C 1.50701 * 126.28848 * 179.90212 * 4 3 2 6 6 N 1.46901 * 109.46921 * 269.70867 * 5 4 3 7 7 C 1.46906 * 110.99793 * 179.97438 * 6 5 4 8 8 H 1.09003 * 109.46871 * 35.00433 * 7 6 5 9 9 C 1.52994 * 109.47113 * 275.00325 * 7 6 5 10 10 C 1.53002 * 109.47092 * 155.00227 * 7 6 5 11 11 C 1.53004 * 109.47119 * 295.00039 * 10 7 6 12 12 C 1.50696 * 109.47273 * 179.97438 * 11 10 7 13 13 H 1.08008 * 119.99688 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00287 * 179.97438 * 12 11 10 15 15 N 1.31518 * 119.99620 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 120.00272 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47062 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.47183 * 119.99978 * 16 14 12 19 19 H 1.48504 * 109.47125 * 240.00444 * 16 14 12 20 20 N 1.29950 * 107.42692 * 359.63854 * 4 3 2 21 21 O 1.21302 * 110.24792 * 0.22714 * 20 4 3 22 22 H 1.08991 * 109.47350 * 180.25371 * 1 2 3 23 23 H 1.08997 * 109.47209 * 300.26176 * 1 2 3 24 24 H 1.09005 * 109.47025 * 60.25549 * 1 2 3 25 25 H 1.09002 * 109.47060 * 29.71048 * 5 4 3 26 26 H 1.09001 * 109.47380 * 149.71135 * 5 4 3 27 27 H 1.00899 * 111.00283 * 303.95218 * 6 5 4 28 28 H 1.09003 * 109.47340 * 299.99821 * 9 7 6 29 29 H 1.08995 * 109.47731 * 59.99955 * 9 7 6 30 30 H 1.08996 * 109.47268 * 180.02562 * 9 7 6 31 31 H 1.08998 * 109.46846 * 54.99830 * 10 7 6 32 32 H 1.08995 * 109.47022 * 175.00292 * 10 7 6 33 33 H 1.08999 * 109.47179 * 300.00188 * 11 10 7 34 34 H 1.09004 * 109.46918 * 59.99924 * 11 10 7 35 35 H 0.97000 * 119.99481 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2880 1.0534 0.0000 4 6 3.5441 0.5728 -0.0027 5 6 4.8112 1.3886 -0.0059 6 7 5.2235 1.6473 -1.3920 7 6 6.4579 2.4426 -1.4343 8 1 7.1010 2.1599 -0.6008 9 6 6.1108 3.9289 -1.3294 10 6 7.1880 2.1812 -2.7532 11 6 7.6449 0.7218 -2.8027 12 6 8.3634 0.4641 -4.1020 13 1 8.4828 1.2617 -4.8205 14 6 8.8694 -0.7894 -4.3732 15 7 8.7245 -1.7604 -3.4981 16 14 9.7608 -1.1086 -5.9835 17 1 9.7899 0.1387 -6.7888 18 1 11.1510 -1.5475 -5.7011 19 1 9.0504 -2.1706 -6.7404 20 7 3.4645 -0.7242 0.0036 21 8 2.3029 -1.0735 0.0053 22 1 -0.3633 -1.0276 0.0046 23 1 -0.3633 0.5179 0.8876 24 1 -0.3633 0.5099 -0.8923 25 1 4.6347 2.3360 0.5035 26 1 5.5983 0.8394 0.5107 27 1 5.3310 0.7847 -1.9042 28 1 5.4678 4.2116 -2.1629 29 1 5.5907 4.1152 -0.3898 30 1 7.0267 4.5190 -1.3612 31 1 6.5144 2.3795 -3.5868 32 1 8.0563 2.8362 -2.8238 33 1 8.3184 0.5234 -1.9690 34 1 6.7765 0.0667 -2.7321 35 1 9.0802 -2.6424 -3.6891 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172476073.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:18 Heat of formation + Delta-G solvation = 25.861510 kcal Electronic energy + Delta-G solvation = -16706.283709 eV Core-core repulsion = 13934.069458 eV Total energy + Delta-G solvation = -2772.214251 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -46.66501 -38.94385 -36.98541 -35.43502 -34.63975 -32.85182 -30.89752 -29.68909 -27.68496 -26.79094 -24.53977 -23.30233 -22.27963 -21.18303 -19.25252 -18.74517 -18.40410 -16.81749 -16.59837 -16.54551 -16.09648 -15.14562 -14.50826 -14.39969 -14.33690 -14.16730 -13.94775 -13.66288 -13.23670 -13.11353 -12.91124 -12.88394 -12.70052 -12.44653 -12.34573 -12.11703 -11.92271 -11.66161 -11.36006 -11.03816 -10.90939 -10.59457 -9.56070 -8.23481 -6.34924 0.17199 1.12163 1.37278 1.37583 1.51261 1.97532 2.38212 2.59004 2.98488 3.09597 3.29391 3.89687 4.02036 4.18296 4.31665 4.40400 4.44197 4.60914 4.67346 4.70437 4.74152 4.94484 4.99073 5.01630 5.03858 5.15679 5.16811 5.42641 5.49534 5.61617 5.79963 6.00511 6.13193 6.21439 6.82186 7.18029 7.34836 8.88289 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.024570 B = 0.005186 C = 0.004514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.318861 B = 5397.603312 C = 6201.697138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.181 3.819 3 N -0.495 5.495 4 C 0.168 3.832 5 C 0.151 3.849 6 N -0.682 5.682 7 C 0.087 3.913 8 H 0.039 0.961 9 C -0.127 4.127 10 C -0.101 4.101 11 C 0.025 3.975 12 C -0.542 4.542 13 H 0.061 0.939 14 C -0.001 4.001 15 N -0.934 5.934 16 Si 0.966 3.034 17 H -0.260 1.260 18 H -0.277 1.277 19 H -0.279 1.279 20 N -0.412 5.412 21 O 0.074 5.926 22 H 0.121 0.879 23 H 0.124 0.876 24 H 0.116 0.884 25 H 0.120 0.880 26 H 0.051 0.949 27 H 0.337 0.663 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.054 0.946 32 H 0.066 0.934 33 H -0.014 1.014 34 H -0.010 1.010 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.974 6.359 8.294 19.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.039 4.039 3 N -0.230 5.230 4 C -0.105 4.105 5 C 0.021 3.979 6 N -0.316 5.316 7 C -0.022 4.022 8 H 0.057 0.943 9 C -0.185 4.185 10 C -0.139 4.139 11 C -0.012 4.012 12 C -0.580 4.580 13 H 0.079 0.921 14 C -0.199 4.199 15 N -0.574 5.574 16 Si 0.790 3.210 17 H -0.184 1.184 18 H -0.203 1.203 19 H -0.205 1.205 20 N -0.121 5.121 21 O 0.015 5.985 22 H 0.139 0.861 23 H 0.142 0.858 24 H 0.135 0.865 25 H 0.138 0.862 26 H 0.069 0.931 27 H 0.156 0.844 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.005 0.995 34 H 0.009 0.991 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -15.542 6.671 8.266 18.825 hybrid contribution 1.259 -1.452 -0.456 1.975 sum -14.283 5.219 7.811 17.096 Atomic orbital electron populations 1.20771 0.75929 1.07698 1.07071 1.30071 1.00749 0.79583 0.93489 1.71851 0.99929 1.29814 1.21360 1.25890 0.96114 0.87922 1.00554 1.20207 0.87601 0.98248 0.91868 1.60698 1.35010 1.24414 1.11476 1.21631 0.88277 0.95122 0.97147 0.94314 1.21719 1.01783 0.92744 1.02254 1.21651 0.98915 0.97182 0.96149 1.19024 0.94239 0.92632 0.95323 1.21720 1.35948 0.96260 1.04087 0.92088 1.26004 0.97095 0.96036 1.00754 1.70118 1.47354 1.02686 1.37268 0.85386 0.78065 0.78473 0.79058 1.18414 1.20284 1.20484 1.74713 0.98742 1.16593 1.22051 1.85256 1.11035 1.36478 1.65750 0.86072 0.85829 0.86526 0.86244 0.93077 0.84417 0.92431 0.91846 0.91175 0.92702 0.91517 0.99549 0.99135 0.92853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.48 10.51 71.24 0.75 0.27 16 2 C 0.18 4.08 8.51 88.38 0.75 4.84 16 3 N -0.50 -14.50 11.55 -303.19 -3.50 -18.00 16 4 C 0.17 5.64 7.73 138.46 1.07 6.71 16 5 C 0.15 4.87 6.11 85.56 0.52 5.39 16 6 N -0.68 -24.84 6.30 -495.56 -3.12 -27.96 16 7 C 0.09 3.04 2.65 44.91 0.12 3.16 16 8 H 0.04 1.38 7.80 -2.39 -0.02 1.36 16 9 C -0.13 -3.47 9.41 71.98 0.68 -2.80 16 10 C -0.10 -4.24 4.74 30.60 0.15 -4.10 16 11 C 0.03 1.35 4.80 29.85 0.14 1.49 16 12 C -0.54 -31.61 9.11 25.60 0.23 -31.38 16 13 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 14 C 0.00 -0.08 5.46 84.65 0.46 0.39 16 15 N -0.93 -58.43 13.29 21.45 0.28 -58.15 16 16 Si 0.97 45.31 29.54 68.60 2.03 47.33 16 17 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 18 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 19 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 20 N -0.41 -14.60 12.16 -60.31 -0.73 -15.33 16 21 O 0.07 2.13 11.31 74.86 0.85 2.97 16 22 H 0.12 0.44 8.14 -2.39 -0.02 0.42 16 23 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 24 H 0.12 0.76 8.14 -2.38 -0.02 0.74 16 25 H 0.12 3.27 7.44 -2.39 -0.02 3.25 16 26 H 0.05 1.69 8.06 -2.39 -0.02 1.67 16 27 H 0.34 14.44 6.46 -89.69 -0.58 13.86 16 28 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.06 1.52 7.45 -2.39 -0.02 1.50 16 30 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 33 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 34 H -0.01 -0.56 6.43 -2.39 -0.02 -0.57 16 35 H 0.26 15.43 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -73.01 299.31 1.18 -71.83 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: 0.50 Total: 13.34 kcal Atomic # 6 Polarization: -20.91 SS G_CDS: 4.87 Total: -16.03 kcal Atomic # 7 Polarization: -112.37 SS G_CDS: -7.07 Total: -119.44 kcal Atomic # 8 Polarization: 2.13 SS G_CDS: 0.85 Total: 2.97 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.33 kcal Total: -73.01 1.18 -71.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172476073.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.690 kcal (2) G-P(sol) polarization free energy of solvation -73.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds