Wall clock time and date at job start Sun Mar 29 2020 22:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 C 1.52994 * 109.47404 * 294.99916 * 4 2 1 6 6 C 1.50698 * 109.47502 * 179.97438 * 5 4 2 7 7 H 1.08005 * 119.99844 * 0.02562 * 6 5 4 8 8 C 1.37873 * 120.00426 * 180.02562 * 6 5 4 9 9 N 1.31514 * 119.99772 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 120.00342 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47235 * 60.00290 * 10 8 6 12 12 H 1.48501 * 109.47463 * 180.02562 * 10 8 6 13 13 H 1.48499 * 109.47109 * 300.00119 * 10 8 6 14 14 N 1.46505 * 109.47411 * 239.99921 * 2 1 3 15 15 N 1.28783 * 125.44603 * 300.02872 * 14 2 1 16 16 N 1.28991 * 108.72506 * 179.97438 * 15 14 2 17 17 C 1.33318 * 107.35503 * 359.97438 * 16 15 14 18 18 C 1.50699 * 126.55420 * 180.02562 * 17 16 15 19 19 C 1.53003 * 109.47151 * 89.96846 * 18 17 16 20 20 N 1.46904 * 109.47053 * 180.02562 * 19 18 17 21 21 N 1.28877 * 125.44910 * 119.71999 * 14 2 1 22 22 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 23 23 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 24 24 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47325 * 55.00085 * 4 2 1 26 26 H 1.09008 * 109.47017 * 174.99994 * 4 2 1 27 27 H 1.09000 * 109.47476 * 300.00087 * 5 4 2 28 28 H 1.09008 * 109.46970 * 60.00049 * 5 4 2 29 29 H 0.97002 * 119.99862 * 180.02562 * 9 8 6 30 30 H 1.08996 * 109.47401 * 209.97784 * 18 17 16 31 31 H 1.09006 * 109.47037 * 329.97188 * 18 17 16 32 32 H 1.08992 * 109.47452 * 300.00332 * 19 18 17 33 33 H 1.08999 * 109.46637 * 60.00554 * 19 18 17 34 34 H 1.00899 * 110.99916 * 180.02562 * 20 19 18 35 35 H 1.00907 * 110.99913 * 303.95897 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6352 0.0689 2.4953 6 6 2.1369 -0.6417 3.7258 7 1 2.6896 -1.5646 3.6288 8 6 1.8904 -0.1140 4.9755 9 7 1.2170 1.0094 5.0936 10 14 2.5129 -0.9946 6.5007 11 1 3.9930 -1.1005 6.4418 12 1 2.1189 -0.2283 7.7102 13 1 1.9213 -2.3552 6.5629 14 7 2.0184 -0.6906 -1.1962 15 7 1.7724 -1.9169 -1.5034 16 7 2.3589 -2.1898 -2.6193 17 6 2.9921 -1.0858 -3.0163 18 6 3.8149 -0.9241 -4.2685 19 6 2.9149 -0.4535 -5.4129 20 7 3.7169 -0.2964 -6.6336 21 7 2.7583 -0.1666 -2.1121 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.6053 -1.7198 1.2952 26 1 3.1263 -0.7995 1.2056 27 1 2.0698 1.0675 2.4494 28 1 0.5488 0.1472 2.5389 29 1 1.0438 1.3810 5.9728 30 1 4.5986 -0.1865 -4.0956 31 1 4.2675 -1.8801 -4.5318 32 1 2.1313 -1.1910 -5.5858 33 1 2.4624 0.5025 -5.1495 34 1 3.1449 0.0143 -7.4045 35 1 4.4898 0.3339 -6.4800 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172480043.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:54 Heat of formation + Delta-G solvation = 101.250109 kcal Electronic energy + Delta-G solvation = -16594.468697 eV Core-core repulsion = 13857.816292 eV Total energy + Delta-G solvation = -2736.652405 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.144 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -44.09773 -37.00443 -35.84875 -33.64907 -33.01683 -32.09150 -29.56344 -28.56330 -25.78329 -24.50454 -23.57746 -21.89879 -21.55707 -19.92548 -17.33661 -16.86647 -16.39033 -16.06559 -15.42176 -14.60610 -14.54360 -14.44446 -13.69018 -13.27375 -13.19508 -12.65868 -12.36536 -12.28999 -12.04504 -11.63676 -11.53248 -11.34540 -11.00531 -10.87704 -10.76950 -10.65509 -10.57630 -10.05150 -9.92105 -9.56191 -9.24112 -9.05866 -8.46423 -6.12621 -4.15616 1.52665 2.21903 2.32048 3.27991 3.32412 3.35424 3.85680 4.35351 4.39220 4.56417 4.79883 4.87727 5.02833 5.12180 5.24071 5.26200 5.28881 5.68039 5.69890 5.78879 5.83682 5.94869 6.00905 6.19745 6.24203 6.35763 6.63753 6.72996 6.76505 7.06834 7.45221 7.55032 7.84325 8.24670 8.64160 8.89375 9.49407 10.98524 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.053639 B = 0.004048 C = 0.003968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.885990 B = 6914.831324 C = 7054.181778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.148 3.852 3 H 0.119 0.881 4 C -0.118 4.118 5 C 0.028 3.972 6 C -0.525 4.525 7 H 0.056 0.944 8 C 0.060 3.940 9 N -0.894 5.894 10 Si 0.895 3.105 11 H -0.276 1.276 12 H -0.286 1.286 13 H -0.276 1.276 14 N -0.119 5.119 15 N -0.056 5.056 16 N -0.295 5.295 17 C 0.152 3.848 18 C -0.016 4.016 19 C 0.068 3.932 20 N -0.849 5.849 21 N -0.312 5.312 22 H 0.103 0.897 23 H 0.055 0.945 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.058 0.942 27 H 0.021 0.979 28 H 0.027 0.973 29 H 0.263 0.737 30 H 0.088 0.912 31 H 0.102 0.898 32 H 0.078 0.922 33 H 0.031 0.969 34 H 0.345 0.655 35 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.615 0.529 -17.204 17.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.050 3.950 3 H 0.137 0.863 4 C -0.157 4.157 5 C -0.010 4.010 6 C -0.563 4.563 7 H 0.074 0.926 8 C -0.142 4.142 9 N -0.533 5.533 10 Si 0.722 3.278 11 H -0.202 1.202 12 H -0.212 1.212 13 H -0.201 1.201 14 N -0.032 5.032 15 N -0.049 5.049 16 N -0.166 5.166 17 C -0.131 4.131 18 C -0.057 4.057 19 C -0.064 4.064 20 N -0.379 5.379 21 N -0.162 5.162 22 H 0.121 0.879 23 H 0.074 0.926 24 H 0.092 0.908 25 H 0.089 0.911 26 H 0.077 0.923 27 H 0.039 0.961 28 H 0.046 0.954 29 H 0.073 0.927 30 H 0.107 0.893 31 H 0.120 0.880 32 H 0.096 0.904 33 H 0.050 0.950 34 H 0.158 0.842 35 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 1.276 -0.411 -16.520 16.574 hybrid contribution 0.356 0.906 0.716 1.208 sum 1.632 0.495 -15.804 15.895 Atomic orbital electron populations 1.22232 0.91606 1.04266 1.03757 1.22474 0.96433 0.97275 0.78809 0.86280 1.22161 1.00659 1.00561 0.92301 1.19140 0.97407 0.95063 0.89379 1.21103 1.35711 1.08685 0.90819 0.92558 1.24987 0.95049 0.94968 0.99192 1.69933 1.39981 1.19340 1.24033 0.86609 0.79342 0.79737 0.82083 1.20182 1.21188 1.20101 1.50774 1.28620 1.06847 1.16992 1.78920 1.17607 0.99366 1.09004 1.75810 1.11236 1.24432 1.05073 1.25375 1.01985 0.86894 0.98866 1.19765 0.95470 1.04449 0.85967 1.21699 0.95615 0.99999 0.89130 1.58670 1.14380 1.58021 1.06845 1.74632 1.13471 1.27498 1.00628 0.87897 0.92629 0.90789 0.91075 0.92309 0.96096 0.95441 0.92747 0.89329 0.87995 0.90375 0.95026 0.84245 0.84606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.33 9.14 37.16 0.34 -1.99 16 2 C 0.15 2.44 3.31 -67.93 -0.23 2.21 16 3 H 0.12 1.84 8.14 -51.93 -0.42 1.42 16 4 C -0.12 -2.30 4.81 -26.74 -0.13 -2.43 16 5 C 0.03 0.65 4.73 -27.89 -0.13 0.52 16 6 C -0.52 -14.21 9.11 -34.44 -0.31 -14.53 16 7 H 0.06 1.50 7.74 -52.48 -0.41 1.10 16 8 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 9 N -0.89 -25.62 13.29 55.43 0.74 -24.88 16 10 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 13 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 14 N -0.12 -2.03 3.73 -4.95 -0.02 -2.05 16 15 N -0.06 -1.02 12.95 60.35 0.78 -0.24 16 16 N -0.29 -5.07 12.50 32.45 0.41 -4.66 16 17 C 0.15 2.28 7.62 -156.62 -1.19 1.09 16 18 C -0.02 -0.17 6.10 -27.88 -0.17 -0.34 16 19 C 0.07 0.63 6.77 -3.82 -0.03 0.61 16 20 N -0.85 -6.29 9.62 -10.37 -0.10 -6.39 16 21 N -0.31 -5.12 12.13 32.46 0.39 -4.72 16 22 H 0.10 1.51 6.56 -51.93 -0.34 1.17 16 23 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 25 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 26 H 0.06 1.19 8.14 -51.92 -0.42 0.77 16 27 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.03 0.66 6.57 -51.92 -0.34 0.32 16 29 H 0.26 7.15 8.31 -40.82 -0.34 6.82 16 30 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.34 2.00 9.08 -39.29 -0.36 1.64 16 35 H 0.34 2.04 8.99 -39.29 -0.35 1.69 16 LS Contribution 300.80 15.07 4.53 4.53 Total: -1.00 -30.32 300.80 -5.40 -35.71 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -5.16 Total: -0.10 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: -1.95 Total: -13.30 kcal Atomic # 7 Polarization: -45.14 SS G_CDS: 2.20 Total: -42.95 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.32 -5.40 -35.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172480043.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.963 kcal (2) G-P(sol) polarization free energy of solvation -30.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds